Wall clock time and date at job start Wed Apr 1 2020 05:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47030 * 2 1 4 4 H 1.09001 * 109.49913 * 305.07192 * 3 2 1 5 5 C 1.53616 * 109.45911 * 65.27768 * 3 2 1 6 6 N 1.46926 * 108.54836 * 174.74234 * 5 3 2 7 7 C 1.34773 * 120.63568 * 126.36868 * 6 5 3 8 8 O 1.21601 * 119.99881 * 3.61681 * 7 6 5 9 9 C 1.47454 * 120.00213 * 183.62611 * 7 6 5 10 10 C 1.39529 * 120.63009 * 306.68199 * 9 7 6 11 11 N 1.31635 * 120.62538 * 180.27361 * 10 9 7 12 12 C 1.32185 * 122.11806 * 0.02562 * 11 10 9 13 13 C 1.37771 * 121.21930 * 359.97438 * 12 11 10 14 14 C 1.39503 * 119.21474 * 0.02562 * 13 12 11 15 15 N 1.38438 * 120.95449 * 180.02562 * 14 13 12 16 16 C 1.46907 * 111.00366 * 299.97805 * 15 14 13 17 17 C 1.46903 * 111.00226 * 63.93301 * 15 14 13 18 18 C 1.46926 * 118.73172 * 306.09144 * 6 5 3 19 19 C 1.53188 * 108.77514 * 53.86353 * 18 6 5 20 20 C 1.53036 * 109.49762 * 185.00411 * 3 2 1 21 21 H 1.09002 * 109.46214 * 298.67506 * 20 3 2 22 22 N 1.46505 * 109.46202 * 58.63046 * 20 3 2 23 23 C 1.36937 * 120.00265 * 205.06706 * 22 20 3 24 24 H 1.07997 * 119.99584 * 0.02562 * 23 22 20 25 25 C 1.38803 * 120.00222 * 180.02562 * 23 22 20 26 26 N 1.31621 * 119.99686 * 0.02562 * 25 23 22 27 27 Si 1.86802 * 120.00245 * 180.02562 * 25 23 22 28 28 H 1.48505 * 109.47005 * 60.00006 * 27 25 23 29 29 H 1.48503 * 109.47052 * 179.97438 * 27 25 23 30 30 H 1.48501 * 109.46720 * 299.99814 * 27 25 23 31 31 H 1.09002 * 109.47842 * 59.99638 * 1 2 3 32 32 H 1.09006 * 109.47199 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46680 * 299.99673 * 1 2 3 34 34 H 1.09005 * 109.46680 * 240.00327 * 2 1 3 35 35 H 1.08997 * 109.47613 * 119.99948 * 2 1 3 36 36 H 1.09003 * 109.74062 * 55.00156 * 5 3 2 37 37 H 1.09007 * 109.66560 * 294.43301 * 5 3 2 38 38 H 1.08001 * 119.69030 * 0.25560 * 10 9 7 39 39 H 1.08001 * 119.38639 * 180.02562 * 12 11 10 40 40 H 1.08001 * 120.39654 * 180.02562 * 13 12 11 41 41 H 1.08995 * 109.46873 * 59.99817 * 16 15 14 42 42 H 1.08996 * 109.47099 * 179.97438 * 16 15 14 43 43 H 1.08998 * 109.46641 * 300.00042 * 16 15 14 44 44 H 1.08994 * 109.46857 * 59.99414 * 17 15 14 45 45 H 1.08998 * 109.47693 * 179.97438 * 17 15 14 46 46 H 1.08997 * 109.46667 * 299.99900 * 17 15 14 47 47 H 1.09010 * 109.58439 * 173.64597 * 18 6 5 48 48 H 1.08997 * 109.59339 * 293.92796 * 18 6 5 49 49 H 1.09003 * 109.50315 * 65.31181 * 19 18 6 50 50 H 1.09010 * 109.49773 * 185.41151 * 19 18 6 51 51 H 0.97002 * 119.99251 * 25.06956 * 22 20 3 52 52 H 0.97003 * 119.99614 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6046 1.9823 -0.8409 5 6 1.6394 2.1269 1.3157 6 7 2.2450 3.4651 1.3496 7 6 1.4857 4.5573 1.5666 8 8 0.2989 4.4356 1.8018 9 6 2.0940 5.8996 1.5185 10 6 3.2170 6.1993 2.2904 11 7 3.7567 7.3992 2.2514 12 6 3.2692 8.3648 1.4916 13 6 2.1630 8.1584 0.6968 14 6 1.5485 6.9060 0.6971 15 7 0.4354 6.6588 -0.0880 16 6 -0.6719 7.5551 0.2712 17 6 0.7623 6.7721 -1.5157 18 6 3.6951 3.5894 1.1486 19 6 4.0735 2.8882 -0.1597 20 6 3.5651 1.4451 -0.1258 21 1 4.0009 0.9265 0.7282 22 7 3.9541 0.7614 -1.3618 23 6 5.1917 0.1845 -1.4649 24 1 5.8809 0.2332 -0.6349 25 6 5.5604 -0.4627 -2.6361 26 7 4.7206 -0.5215 -3.6479 27 14 7.2485 -1.2503 -2.7765 28 1 7.3972 -2.2922 -1.7287 29 1 7.3945 -1.8726 -4.1169 30 1 8.2953 -0.2128 -2.5951 31 1 -0.3635 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.8932 -0.5138 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 2.0009 1.5407 2.1605 37 1 0.5542 2.2156 1.3675 38 1 3.6474 5.4396 2.9261 39 1 3.7475 9.3331 1.4933 40 1 1.7760 8.9567 0.0809 41 1 -0.3636 8.5902 0.1245 42 1 -1.5333 7.3398 -0.3610 43 1 -0.9400 7.4004 1.3163 44 1 1.5368 6.0484 -1.7695 45 1 -0.1295 6.5727 -2.1098 46 1 1.1225 7.7789 -1.7271 47 1 3.9669 4.6435 1.0901 48 1 4.2209 3.1223 1.9813 49 1 3.6190 3.4144 -0.9992 50 1 5.1577 2.8895 -0.2729 51 1 3.3348 0.7175 -2.1072 52 1 4.9781 -0.9742 -4.4662 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037957924.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:14 Heat of formation + Delta-G solvation = 28.279267 kcal Electronic energy + Delta-G solvation = -32077.467766 eV Core-core repulsion = 28077.565929 eV Total energy + Delta-G solvation = -3999.901837 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.18945 -39.56833 -37.72706 -37.52119 -34.71178 -33.78833 -31.96684 -31.63501 -31.36108 -29.48351 -28.58857 -27.89443 -25.79896 -25.31687 -24.08792 -23.82254 -22.60589 -21.86381 -20.81165 -20.04377 -19.20473 -17.56924 -17.38066 -17.08594 -16.89810 -16.05662 -15.38719 -15.03600 -14.92439 -14.82279 -14.62275 -14.30973 -14.01160 -13.97180 -13.68778 -13.64801 -13.29359 -13.16602 -12.95722 -12.67755 -12.63046 -12.54693 -12.28535 -12.02777 -11.97598 -11.77846 -11.58459 -11.27244 -10.91907 -10.85492 -10.68972 -10.36885 -10.23145 -10.20201 -10.13828 -9.82766 -9.72613 -9.59963 -9.57594 -9.30127 -8.88629 -8.81879 -8.41438 -6.96381 -5.77794 -3.06342 0.57966 0.79742 2.74739 3.08116 3.41292 3.42439 3.47357 3.48049 3.49649 4.08239 4.40950 4.54461 4.57451 4.64986 4.79664 4.96886 5.02796 5.05484 5.18500 5.23305 5.24743 5.27597 5.32364 5.35456 5.38810 5.48041 5.58071 5.60967 5.62083 5.64232 5.70299 5.70918 5.80842 5.92884 6.04116 6.15222 6.17669 6.18699 6.34496 6.38042 6.42250 6.48048 6.51424 6.59714 6.70386 6.84714 6.91744 6.98086 7.07464 7.52846 7.60741 7.68106 8.28755 8.40502 9.51957 10.09506 10.44485 11.44575 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012017 B = 0.003209 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.556692 B = 8722.188478 C = 9549.882364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.103 4.103 4 H 0.069 0.931 5 C 0.122 3.878 6 N -0.601 5.601 7 C 0.574 3.426 8 O -0.523 6.523 9 C -0.155 4.155 10 C 0.138 3.862 11 N -0.487 5.487 12 C 0.121 3.879 13 C -0.211 4.211 14 C 0.183 3.817 15 N -0.507 5.507 16 C 0.035 3.965 17 C 0.028 3.972 18 C 0.100 3.900 19 C -0.149 4.149 20 C 0.184 3.816 21 H 0.048 0.952 22 N -0.720 5.720 23 C -0.238 4.238 24 H 0.069 0.931 25 C -0.011 4.011 26 N -0.932 5.932 27 Si 0.904 3.096 28 H -0.286 1.286 29 H -0.292 1.292 30 H -0.287 1.287 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.083 0.917 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.091 0.909 38 H 0.165 0.835 39 H 0.159 0.841 40 H 0.137 0.863 41 H 0.030 0.970 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.080 0.920 46 H 0.033 0.967 47 H 0.076 0.924 48 H 0.070 0.930 49 H 0.057 0.943 50 H 0.075 0.925 51 H 0.384 0.616 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.137 16.845 9.758 21.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.123 4.123 4 H 0.088 0.912 5 C 0.000 4.000 6 N -0.334 5.334 7 C 0.360 3.640 8 O -0.399 6.399 9 C -0.161 4.161 10 C -0.021 4.021 11 N -0.196 5.196 12 C -0.035 4.035 13 C -0.233 4.233 14 C 0.080 3.920 15 N -0.228 5.228 16 C -0.112 4.112 17 C -0.118 4.118 18 C -0.023 4.023 19 C -0.190 4.190 20 C 0.073 3.927 21 H 0.066 0.934 22 N -0.360 5.360 23 C -0.370 4.370 24 H 0.087 0.913 25 C -0.207 4.207 26 N -0.580 5.580 27 Si 0.735 3.265 28 H -0.213 1.213 29 H -0.218 1.218 30 H -0.213 1.213 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.102 0.898 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.109 0.891 38 H 0.182 0.818 39 H 0.176 0.824 40 H 0.155 0.845 41 H 0.049 0.951 42 H 0.096 0.904 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.098 0.902 46 H 0.051 0.949 47 H 0.094 0.906 48 H 0.088 0.912 49 H 0.076 0.924 50 H 0.093 0.907 51 H 0.218 0.782 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.055 16.370 10.452 21.027 hybrid contribution 0.447 0.293 -1.264 1.372 sum -7.609 16.663 9.188 20.493 Atomic orbital electron populations 1.21840 0.96809 1.00975 1.01321 1.21450 0.94375 0.95722 1.03436 1.21846 0.97551 0.96198 0.96691 0.91210 1.21838 0.99437 0.81005 0.97723 1.48064 1.08452 1.06543 1.70316 1.17697 0.86004 0.83248 0.77062 1.90760 1.14818 1.86156 1.48187 1.21041 0.98340 0.95822 1.00877 1.23049 0.90060 0.93969 0.95044 1.67717 1.30949 1.00748 1.20180 1.22715 0.92202 0.98104 0.90447 1.22654 0.99269 0.98323 1.03045 1.18947 0.90302 0.90808 0.91980 1.59088 1.05055 1.54518 1.04123 1.22425 0.92964 0.92862 1.02928 1.22503 1.02777 1.00539 0.85974 1.22060 0.79559 1.01234 0.99462 1.22660 1.02109 0.99257 0.95000 1.20187 0.90853 0.90429 0.91189 0.93402 1.42402 1.16463 1.64396 1.12739 1.19171 0.91844 1.27368 0.98572 0.91298 1.24708 0.98073 1.01538 0.96428 1.69651 1.35290 1.48374 1.04729 0.86317 0.84214 0.79209 0.76727 1.21298 1.21780 1.21348 0.93020 0.93228 0.93194 0.89832 0.92461 0.91589 0.89067 0.81770 0.82378 0.84522 0.95123 0.90355 0.90742 0.90737 0.90166 0.94870 0.90604 0.91171 0.92370 0.90654 0.78221 0.93505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.68 37.16 0.36 -1.76 16 2 C -0.11 -1.80 5.31 -26.73 -0.14 -1.94 16 3 C -0.10 -1.68 1.93 -90.28 -0.17 -1.85 16 4 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 5 C 0.12 1.78 5.35 -3.49 -0.02 1.76 16 6 N -0.60 -8.60 2.97 -173.76 -0.52 -9.11 16 7 C 0.57 8.69 6.90 -12.51 -0.09 8.61 16 8 O -0.52 -9.37 16.16 5.28 0.09 -9.29 16 9 C -0.15 -2.02 4.93 -104.66 -0.52 -2.54 16 10 C 0.14 1.60 8.60 -17.15 -0.15 1.45 16 11 N -0.49 -5.54 10.34 -13.01 -0.13 -5.67 16 12 C 0.12 1.13 11.15 -17.57 -0.20 0.93 16 13 C -0.21 -1.98 8.65 -39.28 -0.34 -2.32 16 14 C 0.18 2.19 4.72 -83.41 -0.39 1.80 16 15 N -0.51 -6.01 4.19 -186.42 -0.78 -6.79 16 16 C 0.03 0.32 9.34 60.07 0.56 0.89 16 17 C 0.03 0.28 9.38 60.07 0.56 0.85 16 18 C 0.10 1.33 5.49 -3.71 -0.02 1.31 16 19 C -0.15 -2.49 5.66 -26.61 -0.15 -2.64 16 20 C 0.18 3.41 2.19 -67.89 -0.15 3.27 16 21 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 22 N -0.72 -17.00 4.33 -53.38 -0.23 -17.23 16 23 C -0.24 -6.31 9.93 -15.06 -0.15 -6.46 16 24 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 25 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 26 N -0.93 -27.41 13.06 55.49 0.72 -26.69 16 27 Si 0.90 21.89 29.55 -169.99 -5.02 16.87 16 28 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 29 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 30 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.64 6.70 -51.93 -0.35 0.30 16 34 H 0.08 1.61 7.22 -51.93 -0.37 1.24 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.09 1.39 5.76 -51.92 -0.30 1.10 16 38 H 0.17 1.63 7.29 -52.49 -0.38 1.25 16 39 H 0.16 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.14 0.97 7.16 -52.49 -0.38 0.59 16 41 H 0.03 0.23 7.19 -51.93 -0.37 -0.14 16 42 H 0.08 0.65 8.12 -51.93 -0.42 0.23 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.08 0.72 8.12 -51.93 -0.42 0.30 16 46 H 0.03 0.27 7.40 -51.93 -0.38 -0.11 16 47 H 0.08 0.94 4.70 -51.92 -0.24 0.69 16 48 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 50 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 51 H 0.38 9.83 7.51 -40.82 -0.31 9.52 16 52 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 407.51 15.07 6.14 6.14 Total: -1.00 -31.74 407.51 -9.38 -41.11 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -8.55 Total: 9.72 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -1.10 Total: 0.94 kcal Atomic # 7 Polarization: -64.56 SS G_CDS: -0.94 Total: -65.50 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.09 Total: -9.29 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.74 -9.38 -41.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037957924.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.394 kcal (2) G-P(sol) polarization free energy of solvation -31.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds