Wall clock time and date at job start Wed Apr 1 2020 05:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46448 * 2 1 4 4 H 1.08993 * 109.53004 * 305.07909 * 3 2 1 5 5 C 1.53197 * 109.49606 * 65.16833 * 3 2 1 6 6 N 1.46922 * 108.77382 * 174.58067 * 5 3 2 7 7 C 1.34776 * 120.62951 * 126.66253 * 6 5 3 8 8 O 1.21624 * 120.00426 * 354.58420 * 7 6 5 9 9 C 1.47163 * 119.99892 * 174.58536 * 7 6 5 10 10 C 1.38099 * 126.94253 * 99.57319 * 9 7 6 11 11 C 1.39524 * 105.71216 * 179.87442 * 10 9 7 12 12 N 1.31069 * 107.59748 * 0.38320 * 11 10 9 13 13 N 1.28452 * 110.96850 * 359.76575 * 12 11 10 14 14 C 1.46495 * 125.19663 * 179.97438 * 13 12 11 15 15 C 1.51266 * 109.37828 * 180.20842 * 11 10 9 16 16 C 1.54373 * 105.27390 * 17.40097 * 15 11 10 17 17 C 1.50860 * 144.39912 * 0.97115 * 10 9 7 18 18 C 1.46933 * 118.74226 * 306.39012 * 6 5 3 19 19 C 1.53193 * 108.77308 * 53.60467 * 18 6 5 20 20 C 1.53033 * 109.31498 * 305.36851 * 19 18 6 21 21 H 1.08995 * 109.46417 * 301.34350 * 20 19 18 22 22 N 1.46509 * 109.46150 * 181.38414 * 20 19 18 23 23 C 1.36936 * 119.99611 * 85.00062 * 22 20 19 24 24 H 1.07998 * 120.00425 * 359.97438 * 23 22 20 25 25 C 1.38810 * 119.99563 * 180.02562 * 23 22 20 26 26 N 1.31614 * 120.00343 * 359.97438 * 25 23 22 27 27 Si 1.86808 * 119.99888 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.46766 * 59.99617 * 27 25 23 29 29 H 1.48496 * 109.46985 * 179.97438 * 27 25 23 30 30 H 1.48496 * 109.47185 * 300.00237 * 27 25 23 31 31 H 1.09003 * 109.47162 * 59.99773 * 1 2 3 32 32 H 1.09000 * 109.46787 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47065 * 299.99460 * 1 2 3 34 34 H 1.09000 * 109.46588 * 240.00454 * 2 1 3 35 35 H 1.08990 * 109.47276 * 119.99940 * 2 1 3 36 36 H 1.09002 * 109.58853 * 54.79167 * 5 3 2 37 37 H 1.09000 * 109.58351 * 294.36294 * 5 3 2 38 38 H 1.08997 * 109.47403 * 274.97564 * 14 13 12 39 39 H 1.08996 * 109.47438 * 34.98414 * 14 13 12 40 40 H 1.09003 * 109.46798 * 154.98080 * 14 13 12 41 41 H 1.09003 * 110.29206 * 136.35313 * 15 11 10 42 42 H 1.09004 * 110.28138 * 258.36016 * 15 11 10 43 43 H 1.09002 * 110.77894 * 91.96597 * 16 15 11 44 44 H 1.09002 * 110.78576 * 215.40140 * 16 15 11 45 45 H 1.08990 * 110.46397 * 43.19787 * 17 10 9 46 46 H 1.08997 * 110.16065 * 281.12405 * 17 10 9 47 47 H 1.08994 * 109.58668 * 173.39691 * 18 6 5 48 48 H 1.08998 * 109.58334 * 293.67897 * 18 6 5 49 49 H 1.09003 * 109.49693 * 65.32095 * 19 18 6 50 50 H 1.09004 * 109.49596 * 185.41342 * 19 18 6 51 51 H 0.96997 * 119.99950 * 265.00729 * 22 20 19 52 52 H 0.97003 * 120.00142 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6047 1.9828 -0.8406 5 6 1.6385 2.1267 1.3106 6 7 2.2450 3.4643 1.3509 7 6 1.4864 4.5558 1.5734 8 8 0.2767 4.4515 1.6451 9 6 2.1217 5.8741 1.7296 10 6 2.2371 6.8589 0.7684 11 6 2.9071 7.9145 1.3876 12 7 3.1651 7.5515 2.6203 13 7 2.7218 6.3686 2.8534 14 6 2.8415 5.6582 4.1290 15 6 3.0747 9.0497 0.4020 16 6 2.0618 8.7612 -0.7267 17 6 1.9075 7.2262 -0.6572 18 6 3.6952 3.5889 1.1500 19 6 4.0735 2.8883 -0.1588 20 6 3.5652 1.4452 -0.1257 21 1 4.0008 0.9262 0.7280 22 7 3.9541 0.7622 -1.3621 23 6 5.1917 0.1853 -1.4654 24 1 5.8813 0.2341 -0.6356 25 6 5.5604 -0.4613 -2.6370 26 7 4.7203 -0.5204 -3.6485 27 14 7.2490 -1.2477 -2.7783 28 1 7.3988 -2.2897 -1.7308 29 1 7.3949 -1.8694 -4.1189 30 1 8.2952 -0.2096 -2.5969 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 1.9964 1.5376 2.1550 37 1 0.5532 2.2161 1.3586 38 1 3.8082 5.1569 4.1764 39 1 2.7606 6.3701 4.9504 40 1 2.0446 4.9188 4.2092 41 1 2.8465 10.0023 0.8801 42 1 4.0905 9.0598 0.0065 43 1 1.1105 9.2549 -0.5280 44 1 2.4625 9.0663 -1.6934 45 1 0.8845 6.9376 -0.8983 46 1 2.6068 6.7445 -1.3405 47 1 3.9668 4.6428 1.0921 48 1 4.2208 3.1212 1.9824 49 1 3.6191 3.4149 -0.9980 50 1 5.1577 2.8896 -0.2719 51 1 3.3350 0.7188 -2.1075 52 1 4.9781 -0.9720 -4.4674 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037966239.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:53:50 Heat of formation + Delta-G solvation = 56.881611 kcal Electronic energy + Delta-G solvation = -31981.466436 eV Core-core repulsion = 27982.804890 eV Total energy + Delta-G solvation = -3998.661546 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.82276 -40.00993 -37.81176 -37.08274 -34.81492 -33.83552 -32.38758 -31.78540 -31.01279 -29.57602 -28.76654 -27.59062 -26.64051 -25.30667 -23.95605 -23.24706 -22.29799 -21.23817 -20.82763 -20.42107 -19.66366 -18.67973 -17.55215 -17.12002 -16.63513 -16.14865 -15.84590 -15.19088 -15.16115 -14.86908 -14.32397 -14.07560 -13.99923 -13.79674 -13.39072 -13.32162 -13.14010 -13.10986 -12.93481 -12.89954 -12.72652 -12.69854 -12.13409 -11.98661 -11.89921 -11.66284 -11.35210 -11.32527 -11.16243 -10.95968 -10.89366 -10.74595 -10.49304 -10.41597 -10.27072 -10.20402 -10.08609 -9.76808 -9.64774 -9.06721 -8.92835 -8.65356 -8.62037 -7.00581 -5.80880 -3.09907 1.55813 1.99789 2.49135 2.57420 3.02404 3.40063 3.45075 3.46013 3.73903 4.26173 4.54214 4.60310 4.66148 4.80627 4.87814 4.95790 4.98536 5.07536 5.11966 5.15687 5.18546 5.30013 5.39673 5.48881 5.50164 5.56240 5.59254 5.60378 5.63817 5.65328 5.77067 5.80999 5.84010 5.95188 5.96434 6.05140 6.06619 6.10376 6.27002 6.29575 6.33239 6.38853 6.41251 6.49014 6.62265 6.69834 6.77608 6.90766 7.00277 7.30241 7.64512 7.95561 7.99519 8.37091 9.48728 10.05463 10.40543 11.41352 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011295 B = 0.003188 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.467904 B = 8780.424826 C = 9761.452525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.104 4.104 4 H 0.071 0.929 5 C 0.118 3.882 6 N -0.593 5.593 7 C 0.591 3.409 8 O -0.529 6.529 9 C -0.002 4.002 10 C -0.181 4.181 11 C 0.007 3.993 12 N -0.269 5.269 13 N -0.276 5.276 14 C 0.092 3.908 15 C -0.025 4.025 16 C -0.115 4.115 17 C -0.046 4.046 18 C 0.109 3.891 19 C -0.149 4.149 20 C 0.184 3.816 21 H 0.048 0.952 22 N -0.719 5.719 23 C -0.241 4.241 24 H 0.069 0.931 25 C -0.010 4.010 26 N -0.931 5.931 27 Si 0.904 3.096 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.287 1.287 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.048 0.952 34 H 0.085 0.915 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.084 0.916 45 H 0.074 0.926 46 H 0.082 0.918 47 H 0.074 0.926 48 H 0.067 0.933 49 H 0.061 0.939 50 H 0.077 0.923 51 H 0.384 0.616 52 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.743 14.539 12.163 19.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.124 4.124 4 H 0.090 0.910 5 C -0.004 4.004 6 N -0.325 5.325 7 C 0.376 3.624 8 O -0.405 6.405 9 C -0.129 4.129 10 C -0.192 4.192 11 C -0.152 4.152 12 N -0.099 5.099 13 N -0.064 5.064 14 C -0.048 4.048 15 C -0.064 4.064 16 C -0.153 4.153 17 C -0.084 4.084 18 C -0.014 4.014 19 C -0.190 4.190 20 C 0.074 3.926 21 H 0.066 0.934 22 N -0.359 5.359 23 C -0.372 4.372 24 H 0.087 0.913 25 C -0.206 4.206 26 N -0.579 5.579 27 Si 0.735 3.265 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.103 0.897 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.116 0.884 40 H 0.110 0.890 41 H 0.096 0.904 42 H 0.104 0.896 43 H 0.093 0.907 44 H 0.103 0.897 45 H 0.093 0.907 46 H 0.100 0.900 47 H 0.092 0.908 48 H 0.085 0.915 49 H 0.080 0.920 50 H 0.095 0.905 51 H 0.219 0.781 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.706 14.626 13.367 20.619 hybrid contribution 0.611 -0.822 -0.950 1.397 sum -5.095 13.804 12.416 19.253 Atomic orbital electron populations 1.21849 0.96762 1.01084 1.01330 1.21450 0.94397 0.95548 1.03551 1.21786 0.97726 0.96346 0.96570 0.91017 1.21859 0.99524 0.80727 0.98271 1.48171 1.08826 1.06437 1.69050 1.17092 0.86061 0.82045 0.77210 1.90814 1.13338 1.85224 1.51087 1.20415 1.06462 0.96688 0.89332 1.21115 1.05989 0.94118 0.97960 1.22728 1.02514 0.99198 0.90794 1.72638 1.20579 0.98257 1.18437 1.45655 1.40123 1.10380 1.10291 1.22131 1.04271 0.97032 0.81370 1.20407 1.00511 0.93973 0.91523 1.22378 0.99308 0.95159 0.98407 1.20388 1.02336 0.95498 0.90193 1.21871 0.78861 1.01251 0.99462 1.22669 1.02279 0.99215 0.94847 1.20179 0.90713 0.90430 0.91304 0.93432 1.42389 1.16518 1.64389 1.12644 1.19154 0.91834 1.27575 0.98618 0.91334 1.24713 0.98075 1.01445 0.96392 1.69643 1.35270 1.48279 1.04709 0.86317 0.84180 0.79188 0.76769 1.21306 1.21720 1.21329 0.92919 0.93121 0.93266 0.89676 0.92439 0.91255 0.88911 0.89478 0.88388 0.88969 0.90403 0.89646 0.90706 0.89736 0.90704 0.89974 0.90785 0.91514 0.92019 0.90493 0.78148 0.93434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.67 37.16 0.36 -1.69 16 2 C -0.11 -1.73 5.31 -26.73 -0.14 -1.87 16 3 C -0.10 -1.65 1.92 -90.49 -0.17 -1.82 16 4 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 5 C 0.12 1.64 5.34 -3.71 -0.02 1.62 16 6 N -0.59 -8.31 2.97 -174.13 -0.52 -8.82 16 7 C 0.59 9.05 6.88 -12.64 -0.09 8.96 16 8 O -0.53 -9.57 16.52 5.26 0.09 -9.48 16 9 C 0.00 -0.02 4.66 -82.14 -0.38 -0.41 16 10 C -0.18 -2.50 7.02 -104.12 -0.73 -3.23 16 11 C 0.01 0.09 8.13 -82.16 -0.67 -0.58 16 12 N -0.27 -3.68 11.91 33.78 0.40 -3.28 16 13 N -0.28 -3.52 3.75 -63.95 -0.24 -3.76 16 14 C 0.09 0.78 11.22 59.84 0.67 1.46 16 15 C -0.03 -0.23 6.76 -26.89 -0.18 -0.41 16 16 C -0.11 -0.95 7.07 -25.26 -0.18 -1.13 16 17 C -0.05 -0.52 6.76 -27.06 -0.18 -0.70 16 18 C 0.11 1.47 6.32 -3.71 -0.02 1.44 16 19 C -0.15 -2.47 5.66 -26.61 -0.15 -2.62 16 20 C 0.18 3.35 2.19 -67.88 -0.15 3.21 16 21 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 22 N -0.72 -16.76 4.33 -53.38 -0.23 -16.99 16 23 C -0.24 -6.30 9.93 -15.06 -0.15 -6.45 16 24 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 25 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 26 N -0.93 -27.16 13.06 55.49 0.72 -26.44 16 27 Si 0.90 21.71 29.55 -169.99 -5.02 16.68 16 28 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 29 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 30 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.60 6.70 -51.93 -0.35 0.25 16 34 H 0.08 1.60 7.22 -51.93 -0.37 1.22 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.09 1.34 5.72 -51.93 -0.30 1.04 16 38 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.09 0.75 7.66 -51.93 -0.40 0.35 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.07 1.00 6.38 -51.93 -0.33 0.67 16 48 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 50 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 51 H 0.38 9.72 7.51 -40.82 -0.31 9.41 16 52 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 409.44 15.07 6.17 6.17 Total: -1.00 -32.31 409.44 -9.70 -42.01 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -8.79 Total: 8.50 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -2.29 Total: -4.60 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: 0.14 Total: -59.29 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.09 Total: -9.48 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.31 -9.70 -42.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037966239.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.889 kcal (2) G-P(sol) polarization free energy of solvation -32.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds