Wall clock time and date at job start Wed Apr 1 2020 05:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47003 * 2 1 4 4 H 1.09007 * 109.49779 * 54.93731 * 3 2 1 5 5 C 1.53195 * 109.52438 * 294.85663 * 3 2 1 6 6 N 1.46925 * 108.77228 * 185.39689 * 5 3 2 7 7 C 1.34776 * 120.62953 * 233.62674 * 6 5 3 8 8 O 1.21628 * 120.00316 * 354.71696 * 7 6 5 9 9 C 1.47164 * 119.99885 * 174.71620 * 7 6 5 10 10 C 1.38093 * 126.94164 * 269.23956 * 9 7 6 11 11 C 1.39531 * 105.71006 * 179.97438 * 10 9 7 12 12 N 1.31065 * 107.59545 * 359.97438 * 11 10 9 13 13 N 1.28447 * 110.96813 * 359.75091 * 12 11 10 14 14 C 1.46504 * 125.19327 * 180.27024 * 13 12 11 15 15 C 1.51272 * 109.37570 * 179.97438 * 11 10 9 16 16 C 1.54368 * 105.27472 * 17.13950 * 15 11 10 17 17 C 1.50852 * 144.41075 * 359.97438 * 10 9 7 18 18 C 1.46925 * 118.74240 * 53.61096 * 6 5 3 19 19 C 1.53198 * 108.77114 * 306.38911 * 18 6 5 20 20 C 1.53038 * 109.31498 * 54.63636 * 19 18 6 21 21 H 1.08996 * 109.45471 * 58.64351 * 20 19 18 22 22 N 1.46496 * 109.46240 * 178.61507 * 20 19 18 23 23 C 1.36939 * 120.00141 * 275.06800 * 22 20 19 24 24 H 1.08000 * 119.99793 * 359.97438 * 23 22 20 25 25 C 1.38810 * 120.00181 * 179.97438 * 23 22 20 26 26 N 1.31618 * 120.00204 * 0.02562 * 25 23 22 27 27 Si 1.86804 * 119.99835 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47000 * 0.02562 * 27 25 23 29 29 H 1.48505 * 109.46854 * 240.00179 * 27 25 23 30 30 H 1.48498 * 109.47076 * 120.00268 * 27 25 23 31 31 H 1.08999 * 109.47199 * 300.00202 * 1 2 3 32 32 H 1.08999 * 109.47015 * 59.99772 * 1 2 3 33 33 H 1.09003 * 109.47053 * 179.97438 * 1 2 3 34 34 H 1.08994 * 109.46768 * 240.00386 * 2 1 3 35 35 H 1.08999 * 109.47015 * 120.00228 * 2 1 3 36 36 H 1.08998 * 109.58275 * 305.18419 * 5 3 2 37 37 H 1.09000 * 109.58925 * 65.61113 * 5 3 2 38 38 H 1.08995 * 109.47447 * 275.10381 * 14 13 12 39 39 H 1.08999 * 109.47281 * 35.10970 * 14 13 12 40 40 H 1.09003 * 109.46322 * 155.11021 * 14 13 12 41 41 H 1.08999 * 110.28435 * 136.09588 * 15 11 10 42 42 H 1.09001 * 110.27905 * 258.09507 * 15 11 10 43 43 H 1.09003 * 110.77970 * 91.96658 * 16 15 11 44 44 H 1.09008 * 110.78424 * 215.21005 * 16 15 11 45 45 H 1.08997 * 110.30536 * 281.86672 * 17 10 9 46 46 H 1.09005 * 110.30807 * 44.01842 * 17 10 9 47 47 H 1.08996 * 109.58815 * 66.16995 * 18 6 5 48 48 H 1.08993 * 109.59006 * 186.46276 * 18 6 5 49 49 H 1.08997 * 109.49608 * 294.68027 * 19 18 6 50 50 H 1.08997 * 109.49920 * 174.58392 * 19 18 6 51 51 H 0.96998 * 120.00191 * 95.06795 * 22 20 19 52 52 H 0.97004 * 119.99376 * 359.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9823 0.8411 5 6 1.6385 2.1275 -1.3101 6 7 2.2450 3.4652 -1.3495 7 6 1.4854 4.5574 -1.5654 8 8 0.3036 4.4347 -1.8252 9 6 2.0861 5.8986 -1.4868 10 6 2.1707 6.7059 -0.3697 11 6 2.8184 7.8676 -0.7912 12 7 3.0866 7.7311 -2.0669 13 7 2.6788 6.5938 -2.5031 14 6 2.8238 6.1166 -3.8807 15 6 2.9553 8.8182 0.3775 16 6 2.7246 7.9528 1.6348 17 6 1.8375 6.8082 1.0980 18 6 3.6951 3.5896 -1.1486 19 6 4.0735 2.8882 0.1597 20 6 3.5653 1.4451 0.1257 21 1 4.0008 0.9268 -0.7285 22 7 3.9542 0.7614 1.3616 23 6 5.1924 0.1857 1.4651 24 1 5.8820 0.2353 0.6354 25 6 5.5611 -0.4617 2.6363 26 7 4.7205 -0.5227 3.6473 27 14 7.2499 -1.2476 2.7771 28 1 7.9989 -1.0415 1.5116 29 1 7.0989 -2.7028 3.0322 30 1 7.9946 -0.6230 3.8999 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 1.9964 1.5389 -2.1548 37 1 0.5532 2.2169 -1.3581 38 1 1.9975 6.4922 -4.4841 39 1 3.7670 6.4758 -4.2923 40 1 2.8146 5.0267 -3.8903 41 1 3.9547 9.2529 0.3960 42 1 2.2030 9.6045 0.3150 43 1 3.6692 7.5644 2.0156 44 1 2.2032 8.5210 2.4052 45 1 0.7835 7.0521 1.2305 46 1 2.0771 5.8742 1.6063 47 1 4.2208 3.1203 -1.9801 48 1 3.9671 4.6436 -1.0925 49 1 3.6191 3.4143 0.9992 50 1 5.1576 2.8894 0.2728 51 1 3.3347 0.7165 2.1067 52 1 3.8435 -0.1148 3.5739 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037966247.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:54:00 Heat of formation + Delta-G solvation = 57.035551 kcal Electronic energy + Delta-G solvation = -32166.044247 eV Core-core repulsion = 28167.389376 eV Total energy + Delta-G solvation = -3998.654871 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.84789 -40.07254 -37.90795 -37.08668 -34.96723 -34.04141 -32.40339 -31.90183 -31.04088 -29.50516 -28.70195 -27.59218 -26.64658 -25.20610 -23.94061 -23.27912 -22.35757 -21.31155 -20.92815 -20.44189 -19.71844 -18.75010 -17.48641 -17.33133 -16.88142 -16.10016 -15.90560 -15.21394 -15.09115 -15.01269 -14.48765 -14.18614 -14.05406 -13.66609 -13.56007 -13.43482 -13.28753 -13.14182 -12.97632 -12.94805 -12.80839 -12.72205 -12.20748 -11.99273 -11.98211 -11.76111 -11.44254 -11.32541 -11.15846 -10.97084 -10.78187 -10.62723 -10.49333 -10.39728 -10.31598 -10.13772 -10.06772 -9.92308 -9.22141 -9.08702 -8.93712 -8.67788 -8.66929 -7.07624 -6.13783 -3.14306 1.56173 1.94576 2.46740 2.52613 2.97651 3.48550 3.54685 3.63733 3.72044 4.21712 4.58355 4.61700 4.65406 4.78941 4.88188 4.89443 4.97158 5.05097 5.05464 5.11077 5.11607 5.21636 5.31903 5.43280 5.47869 5.50896 5.53825 5.57957 5.60929 5.65139 5.73254 5.77301 5.84315 5.87470 5.94629 5.97484 6.01693 6.06132 6.13001 6.20777 6.23567 6.31515 6.36413 6.40814 6.52193 6.67468 6.68727 6.78539 6.91534 7.24174 7.77105 7.92788 7.95143 8.71712 9.17829 10.04264 10.19438 11.34400 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010884 B = 0.003369 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.908533 B = 8309.545801 C = 9395.704100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.106 4.106 4 H 0.070 0.930 5 C 0.120 3.880 6 N -0.592 5.592 7 C 0.592 3.408 8 O -0.530 6.530 9 C -0.002 4.002 10 C -0.182 4.182 11 C 0.008 3.992 12 N -0.269 5.269 13 N -0.277 5.277 14 C 0.093 3.907 15 C -0.025 4.025 16 C -0.115 4.115 17 C -0.045 4.045 18 C 0.108 3.892 19 C -0.148 4.148 20 C 0.190 3.810 21 H 0.049 0.951 22 N -0.731 5.731 23 C -0.331 4.331 24 H 0.064 0.936 25 C -0.043 4.043 26 N -0.943 5.943 27 Si 1.083 2.917 28 H -0.295 1.295 29 H -0.293 1.293 30 H -0.293 1.293 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.079 0.921 46 H 0.075 0.925 47 H 0.069 0.931 48 H 0.075 0.925 49 H 0.060 0.940 50 H 0.077 0.923 51 H 0.367 0.633 52 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.383 14.448 -11.537 19.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.126 4.126 4 H 0.088 0.912 5 C -0.002 4.002 6 N -0.324 5.324 7 C 0.376 3.624 8 O -0.406 6.406 9 C -0.129 4.129 10 C -0.192 4.192 11 C -0.151 4.151 12 N -0.099 5.099 13 N -0.065 5.065 14 C -0.048 4.048 15 C -0.064 4.064 16 C -0.153 4.153 17 C -0.083 4.083 18 C -0.015 4.015 19 C -0.189 4.189 20 C 0.079 3.921 21 H 0.067 0.933 22 N -0.372 5.372 23 C -0.462 4.462 24 H 0.082 0.918 25 C -0.240 4.240 26 N -0.589 5.589 27 Si 0.914 3.086 28 H -0.222 1.222 29 H -0.220 1.220 30 H -0.221 1.221 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.111 0.889 38 H 0.104 0.896 39 H 0.118 0.882 40 H 0.110 0.890 41 H 0.097 0.903 42 H 0.102 0.898 43 H 0.096 0.904 44 H 0.102 0.898 45 H 0.097 0.903 46 H 0.094 0.906 47 H 0.087 0.913 48 H 0.093 0.907 49 H 0.078 0.922 50 H 0.095 0.905 51 H 0.200 0.800 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.315 13.956 -11.951 18.874 hybrid contribution -1.389 0.456 -0.354 1.505 sum -5.704 14.412 -12.305 19.791 Atomic orbital electron populations 1.21853 0.96606 1.01219 1.01395 1.21436 0.94514 0.95483 1.03422 1.21816 0.97779 0.96344 0.96667 0.91184 1.21835 0.99501 0.80794 0.98119 1.48163 1.08721 1.06353 1.69137 1.17105 0.85665 0.82372 0.77256 1.90815 1.15405 1.86150 1.48234 1.20382 1.06885 0.95804 0.89857 1.21113 1.06027 0.95589 0.96505 1.22737 1.02718 0.98478 0.91203 1.72636 1.21087 1.03269 1.12907 1.45662 1.40998 1.10521 1.09297 1.22127 1.04833 1.00823 0.76970 1.20409 1.02864 0.95338 0.87781 1.22382 1.00507 0.95935 0.96477 1.20382 1.00041 0.99597 0.88300 1.21878 0.78840 1.01321 0.99468 1.22640 1.02341 0.99006 0.94919 1.20110 0.90546 0.90421 0.90988 0.93314 1.42406 1.16506 1.65603 1.12709 1.20061 0.92405 1.32075 1.01622 0.91781 1.25703 1.05758 1.00193 0.92386 1.70821 1.08323 1.47578 1.32157 0.83186 0.74345 0.76286 0.74787 1.22186 1.22043 1.22064 0.92953 0.93109 0.92999 0.92275 0.90124 0.91178 0.88891 0.89619 0.88234 0.89026 0.90262 0.89831 0.90392 0.89804 0.90277 0.90596 0.91321 0.90660 0.92171 0.90480 0.79951 0.93292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.68 37.16 0.36 -1.66 16 2 C -0.11 -1.71 5.31 -26.73 -0.14 -1.85 16 3 C -0.11 -1.67 1.92 -90.50 -0.17 -1.84 16 4 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 5 C 0.12 1.67 5.31 -3.71 -0.02 1.65 16 6 N -0.59 -8.33 2.97 -174.14 -0.52 -8.85 16 7 C 0.59 9.07 6.88 -12.64 -0.09 8.98 16 8 O -0.53 -9.54 16.54 5.25 0.09 -9.46 16 9 C 0.00 -0.03 4.64 -82.15 -0.38 -0.41 16 10 C -0.18 -2.53 7.02 -104.12 -0.73 -3.26 16 11 C 0.01 0.10 8.13 -82.16 -0.67 -0.56 16 12 N -0.27 -3.72 11.91 33.78 0.40 -3.32 16 13 N -0.28 -3.57 3.75 -63.95 -0.24 -3.81 16 14 C 0.09 0.80 11.22 59.85 0.67 1.47 16 15 C -0.02 -0.23 6.76 -26.89 -0.18 -0.42 16 16 C -0.12 -1.01 7.07 -25.26 -0.18 -1.19 16 17 C -0.05 -0.52 6.76 -27.05 -0.18 -0.70 16 18 C 0.11 1.47 6.35 -3.71 -0.02 1.45 16 19 C -0.15 -2.47 5.66 -26.61 -0.15 -2.62 16 20 C 0.19 3.48 2.19 -67.89 -0.15 3.33 16 21 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 22 N -0.73 -16.97 4.33 -53.39 -0.23 -17.20 16 23 C -0.33 -8.77 9.93 -15.06 -0.15 -8.92 16 24 H 0.06 1.69 7.83 -52.49 -0.41 1.28 16 25 C -0.04 -1.19 5.50 -17.43 -0.10 -1.28 16 26 N -0.94 -28.25 13.70 55.49 0.76 -27.49 16 27 Si 1.08 25.31 29.92 -169.99 -5.09 20.23 16 28 H -0.30 -6.48 7.11 56.52 0.40 -6.08 16 29 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 30 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.62 6.70 -51.93 -0.35 0.27 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 1.49 7.21 -51.93 -0.37 1.12 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.09 1.34 5.76 -51.93 -0.30 1.04 16 38 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.09 0.73 7.66 -51.93 -0.40 0.33 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.08 0.56 8.14 -51.92 -0.42 0.14 16 45 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.08 1.02 6.32 -51.93 -0.33 0.69 16 49 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 50 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 51 H 0.37 8.98 6.34 -40.82 -0.26 8.72 16 52 H 0.26 7.54 6.77 -40.82 -0.28 7.26 16 LS Contribution 407.72 15.07 6.14 6.14 Total: -1.00 -33.23 407.72 -9.64 -42.86 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -8.67 Total: 8.72 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -2.28 Total: -7.83 kcal Atomic # 7 Polarization: -60.84 SS G_CDS: 0.17 Total: -60.67 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.09 Total: -9.46 kcal Atomic # 14 Polarization: 25.31 SS G_CDS: -5.09 Total: 20.23 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.23 -9.64 -42.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037966247.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.900 kcal (2) G-P(sol) polarization free energy of solvation -33.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds