Wall clock time and date at job start Wed Apr 1 2020 05:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47127 * 2 1 4 4 H 1.08996 * 109.50007 * 305.06766 * 3 2 1 5 5 C 1.53201 * 109.52327 * 65.14447 * 3 2 1 6 6 N 1.46926 * 108.77445 * 174.60247 * 5 3 2 7 7 C 1.34777 * 120.62739 * 126.40994 * 6 5 3 8 8 O 1.21510 * 120.00292 * 351.92776 * 7 6 5 9 9 C 1.48185 * 119.99617 * 171.91660 * 7 6 5 10 10 C 1.39036 * 119.68749 * 160.60052 * 9 7 6 11 11 C 1.39455 * 118.95816 * 179.71342 * 10 9 7 12 12 N 1.39185 * 120.83727 * 180.25607 * 11 10 9 13 13 C 1.46502 * 120.00462 * 175.30046 * 12 11 10 14 14 C 1.46503 * 119.99788 * 355.30290 * 12 11 10 15 15 C 1.39423 * 118.33063 * 0.54701 * 11 10 9 16 16 C 1.38228 * 119.26683 * 359.73264 * 15 11 10 17 17 N 1.31646 * 120.99351 * 359.97438 * 16 15 11 18 18 C 1.46926 * 118.73870 * 306.39398 * 6 5 3 19 19 C 1.53186 * 108.77488 * 53.60745 * 18 6 5 20 20 C 1.53036 * 109.31731 * 305.36330 * 19 18 6 21 21 H 1.09000 * 109.45100 * 181.38420 * 20 19 18 22 22 N 1.46508 * 109.45876 * 301.34930 * 20 19 18 23 23 C 1.36938 * 119.99762 * 275.06299 * 22 20 19 24 24 H 1.07998 * 120.00084 * 0.02562 * 23 22 20 25 25 C 1.38812 * 119.99961 * 179.97438 * 23 22 20 26 26 N 1.31614 * 119.99824 * 180.02562 * 25 23 22 27 27 Si 1.86798 * 119.99724 * 0.02562 * 25 23 22 28 28 H 1.48503 * 109.47386 * 89.99791 * 27 25 23 29 29 H 1.48499 * 109.47427 * 329.99888 * 27 25 23 30 30 H 1.48499 * 109.47048 * 209.99471 * 27 25 23 31 31 H 1.09006 * 109.47340 * 299.99923 * 1 2 3 32 32 H 1.08995 * 109.47430 * 59.99756 * 1 2 3 33 33 H 1.08999 * 109.47378 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47238 * 239.99840 * 2 1 3 35 35 H 1.09001 * 109.47353 * 119.99528 * 2 1 3 36 36 H 1.09002 * 109.58535 * 294.39122 * 5 3 2 37 37 H 1.09000 * 109.58587 * 54.67463 * 5 3 2 38 38 H 1.07997 * 120.52163 * 0.02562 * 10 9 7 39 39 H 1.08997 * 109.46896 * 354.55720 * 13 12 11 40 40 H 1.08994 * 109.47137 * 114.55822 * 13 12 11 41 41 H 1.08998 * 109.47148 * 234.55894 * 13 12 11 42 42 H 1.08995 * 109.47489 * 89.99315 * 14 12 11 43 43 H 1.08997 * 109.47138 * 210.00164 * 14 12 11 44 44 H 1.09002 * 109.46810 * 329.99592 * 14 12 11 45 45 H 1.08000 * 120.36481 * 179.70999 * 15 11 10 46 46 H 1.07996 * 119.49980 * 179.97438 * 16 15 11 47 47 H 1.09000 * 109.58242 * 173.39548 * 18 6 5 48 48 H 1.09005 * 109.58273 * 293.67624 * 18 6 5 49 49 H 1.09009 * 109.49475 * 185.41108 * 19 18 6 50 50 H 1.09003 * 109.50097 * 65.32166 * 19 18 6 51 51 H 0.96995 * 119.99588 * 95.06728 * 22 20 19 52 52 H 0.97010 * 119.99557 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6047 1.9823 -0.8409 5 6 1.6384 2.1275 1.3102 6 7 2.2449 3.4652 1.3496 7 6 1.4854 4.5573 1.5664 8 8 0.2743 4.4612 1.5852 9 6 2.1276 5.8753 1.7819 10 6 1.3881 7.0390 1.6031 11 6 2.0059 8.2710 1.8159 12 7 1.3011 9.4602 1.6534 13 6 1.9365 10.7390 1.9807 14 6 -0.0763 9.4330 1.1550 15 6 3.3491 8.2818 2.1896 16 6 4.0180 7.0817 2.3413 17 7 3.4057 5.9340 2.1389 18 6 3.6950 3.5896 1.1487 19 6 4.0734 2.8882 -0.1596 20 6 3.5651 1.4451 -0.1257 21 1 3.8546 0.9366 -1.0454 22 7 4.1507 0.7482 1.0223 23 6 5.3885 0.1725 0.9152 24 1 5.9333 0.2325 -0.0153 25 6 5.9436 -0.4873 2.0031 26 7 7.1335 -1.0402 1.9003 27 14 5.0016 -0.5904 3.6128 28 1 4.1596 -1.8137 3.6163 29 1 4.1352 0.6070 3.7571 30 1 5.9609 -0.6467 4.7450 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 0.5531 2.2168 1.3581 37 1 1.9942 1.5376 2.1549 38 1 0.3501 6.9896 1.3090 39 1 2.9155 10.5555 2.4232 40 1 2.0533 11.3297 1.0721 41 1 1.3133 11.2833 2.6902 42 1 -0.7654 9.3520 1.9957 43 1 -0.2815 10.3508 0.6041 44 1 -0.2068 8.5758 0.4945 45 1 3.8613 9.2176 2.3583 46 1 5.0586 7.0857 2.6303 47 1 3.9667 4.6435 1.0901 48 1 4.2207 3.1224 1.9815 49 1 5.1576 2.8895 -0.2727 50 1 3.6191 3.4144 -0.9991 51 1 3.6615 0.6947 1.8581 52 1 7.5212 -1.5016 2.6605 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037977950.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:54:26 Heat of formation + Delta-G solvation = 42.930658 kcal Electronic energy + Delta-G solvation = -31708.441996 eV Core-core repulsion = 27709.175491 eV Total energy + Delta-G solvation = -3999.266505 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.91457 -39.59902 -37.85793 -37.16151 -34.43866 -33.78069 -31.79211 -31.63669 -31.42759 -29.70790 -29.01163 -28.47432 -25.97210 -25.44057 -23.86691 -23.33313 -22.97245 -22.18695 -20.74057 -19.89484 -18.52133 -17.83011 -17.49541 -17.21318 -16.29249 -15.87735 -15.62923 -15.31797 -15.18099 -14.79945 -14.62217 -14.33119 -14.24566 -14.06987 -13.56501 -13.49509 -13.33193 -13.22028 -13.03233 -12.96814 -12.71258 -12.55317 -12.39142 -12.32715 -11.83126 -11.61059 -11.51476 -11.17405 -11.11073 -10.88383 -10.81236 -10.60700 -10.32837 -10.30182 -10.13760 -10.05701 -9.70729 -9.49199 -9.32749 -9.11382 -8.78890 -8.20180 -7.97845 -7.19161 -5.72417 -3.06517 0.67216 1.27154 2.57951 2.84269 3.21487 3.40903 3.44388 3.49340 3.81828 4.21258 4.43109 4.48842 4.63418 4.76793 4.83223 4.86069 4.96004 5.06221 5.13356 5.16418 5.19415 5.25829 5.30584 5.34017 5.46994 5.50260 5.58992 5.62002 5.64609 5.71166 5.73118 5.79902 5.85699 5.90657 6.04021 6.14159 6.25646 6.26384 6.33988 6.39161 6.51419 6.56780 6.69854 6.70363 6.76284 6.80522 6.88594 6.94286 7.05650 7.66766 7.83688 8.04755 8.33409 8.46985 9.25879 9.98797 10.19227 11.46251 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013462 B = 0.003154 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.353655 B = 8875.733084 C =10108.218660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.106 4.106 4 H 0.071 0.929 5 C 0.115 3.885 6 N -0.580 5.580 7 C 0.566 3.434 8 O -0.549 6.549 9 C 0.127 3.873 10 C -0.190 4.190 11 C 0.242 3.758 12 N -0.628 5.628 13 C 0.088 3.912 14 C 0.089 3.911 15 C -0.238 4.238 16 C 0.135 3.865 17 N -0.485 5.485 18 C 0.099 3.901 19 C -0.152 4.152 20 C 0.184 3.816 21 H 0.058 0.942 22 N -0.743 5.743 23 C -0.235 4.235 24 H 0.090 0.910 25 C 0.005 3.995 26 N -0.935 5.935 27 Si 0.877 3.123 28 H -0.285 1.285 29 H -0.277 1.277 30 H -0.292 1.292 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.143 0.857 39 H 0.080 0.920 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.053 0.947 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.137 0.863 46 H 0.162 0.838 47 H 0.117 0.883 48 H 0.077 0.923 49 H 0.077 0.923 50 H 0.047 0.953 51 H 0.360 0.640 52 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.630 22.777 -2.160 26.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.125 4.125 4 H 0.090 0.910 5 C -0.007 4.007 6 N -0.310 5.310 7 C 0.353 3.647 8 O -0.427 6.427 9 C -0.010 4.010 10 C -0.216 4.216 11 C 0.131 3.869 12 N -0.340 5.340 13 C -0.055 4.055 14 C -0.054 4.054 15 C -0.263 4.263 16 C -0.022 4.022 17 N -0.200 5.200 18 C -0.022 4.022 19 C -0.193 4.193 20 C 0.074 3.926 21 H 0.076 0.924 22 N -0.386 5.386 23 C -0.365 4.365 24 H 0.108 0.892 25 C -0.190 4.190 26 N -0.584 5.584 27 Si 0.708 3.292 28 H -0.212 1.212 29 H -0.203 1.203 30 H -0.218 1.218 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.086 0.914 38 H 0.161 0.839 39 H 0.098 0.902 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.154 0.846 46 H 0.180 0.820 47 H 0.134 0.866 48 H 0.095 0.905 49 H 0.096 0.904 50 H 0.065 0.935 51 H 0.194 0.806 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -12.707 21.996 -2.151 25.494 hybrid contribution -0.837 0.734 1.197 1.635 sum -13.544 22.730 -0.954 26.477 Atomic orbital electron populations 1.21858 0.96664 1.01102 1.01489 1.21431 0.94439 0.95747 1.03282 1.21793 0.97567 0.96088 0.97101 0.91022 1.21743 0.99005 0.81782 0.98172 1.47997 1.09688 1.05693 1.67575 1.17938 0.86059 0.83256 0.77460 1.90726 1.13348 1.85474 1.53172 1.20904 0.90107 0.93371 0.96591 1.21521 1.02026 0.90240 1.07818 1.17964 0.91037 0.86183 0.91668 1.46257 1.13811 1.03454 1.70447 1.21752 0.98899 0.84292 1.00535 1.21712 0.81450 1.03055 0.99171 1.21825 0.93598 1.00597 1.10268 1.22666 1.00081 0.86662 0.92825 1.67923 1.08714 1.28688 1.14693 1.22460 0.77633 1.03728 0.98408 1.22554 1.02062 0.98476 0.96199 1.20205 0.89317 0.90992 0.92054 0.92415 1.42828 1.19725 1.65774 1.10323 1.19053 0.92145 1.26240 0.99097 0.89224 1.24612 0.96466 1.00467 0.97452 1.69694 1.16310 1.41540 1.30819 0.86665 0.79463 0.77811 0.85281 1.21180 1.20335 1.21848 0.92861 0.93123 0.93088 0.91505 0.91169 0.89344 0.91426 0.83947 0.90188 0.92553 0.92204 0.92840 0.91128 0.90888 0.84565 0.82040 0.86632 0.90497 0.90399 0.93463 0.80619 0.93184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.67 37.15 0.36 -1.66 16 2 C -0.11 -1.73 5.19 -26.73 -0.14 -1.86 16 3 C -0.11 -1.72 2.13 -90.50 -0.19 -1.91 16 4 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 5 C 0.12 1.97 5.04 -3.71 -0.02 1.95 16 6 N -0.58 -10.03 2.97 -173.75 -0.52 -10.55 16 7 C 0.57 9.78 7.60 -12.17 -0.09 9.68 16 8 O -0.55 -10.37 15.92 5.36 0.09 -10.28 16 9 C 0.13 1.91 6.37 -83.05 -0.53 1.38 16 10 C -0.19 -2.41 8.74 -38.83 -0.34 -2.75 16 11 C 0.24 2.53 6.56 -83.63 -0.55 1.98 16 12 N -0.63 -5.02 3.40 -187.37 -0.64 -5.65 16 13 C 0.09 0.45 10.61 59.85 0.63 1.08 16 14 C 0.09 0.57 10.16 59.85 0.61 1.17 16 15 C -0.24 -2.23 9.33 -39.14 -0.37 -2.60 16 16 C 0.14 1.48 11.17 -17.63 -0.20 1.28 16 17 N -0.48 -6.91 6.55 -9.89 -0.06 -6.97 16 18 C 0.10 1.73 5.52 -3.71 -0.02 1.71 16 19 C -0.15 -2.65 5.78 -26.62 -0.15 -2.81 16 20 C 0.18 3.46 2.53 -67.89 -0.17 3.29 16 21 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 22 N -0.74 -16.79 3.53 -53.38 -0.19 -16.98 16 23 C -0.24 -6.39 10.41 -15.06 -0.16 -6.55 16 24 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 25 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 26 N -0.94 -29.11 13.97 55.49 0.78 -28.34 16 27 Si 0.88 22.18 27.74 -169.99 -4.71 17.47 16 28 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 29 H -0.28 -6.69 6.52 56.52 0.37 -6.33 16 30 H -0.29 -7.55 7.11 56.52 0.40 -7.14 16 31 H 0.05 0.70 6.70 -51.93 -0.35 0.35 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.07 1.22 7.70 -51.93 -0.40 0.82 16 36 H 0.09 1.48 5.73 -51.93 -0.30 1.18 16 37 H 0.07 1.24 6.65 -51.93 -0.35 0.90 16 38 H 0.14 1.75 6.12 -52.49 -0.32 1.43 16 39 H 0.08 0.36 5.45 -51.93 -0.28 0.07 16 40 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 42 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.07 0.31 8.07 -51.93 -0.42 -0.11 16 44 H 0.07 0.51 6.46 -51.93 -0.34 0.17 16 45 H 0.14 0.88 5.93 -52.49 -0.31 0.57 16 46 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 47 H 0.12 1.88 4.45 -57.74 -0.26 1.63 16 48 H 0.08 1.54 7.74 -51.93 -0.40 1.14 16 49 H 0.08 1.45 8.14 -51.92 -0.42 1.03 16 50 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 51 H 0.36 8.23 3.81 -40.82 -0.16 8.07 16 52 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 397.71 15.07 5.99 5.99 Total: -1.00 -33.32 397.71 -8.80 -42.12 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -8.11 Total: 9.75 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: -1.42 Total: 3.44 kcal Atomic # 7 Polarization: -67.86 SS G_CDS: -0.63 Total: -68.49 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.09 Total: -10.28 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.71 Total: 17.47 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.32 -8.80 -42.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037977950.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.050 kcal (2) G-P(sol) polarization free energy of solvation -33.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds