Wall clock time and date at job start Wed Apr 1 2020 05:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53007 * 109.46963 * 2 1 4 4 H 1.08995 * 109.49627 * 55.06545 * 3 2 1 5 5 C 1.53189 * 109.49625 * 295.00076 * 3 2 1 6 6 N 1.46929 * 108.77601 * 185.38233 * 5 3 2 7 7 C 1.34774 * 120.63323 * 233.58852 * 6 5 3 8 8 O 1.21516 * 119.99816 * 359.67403 * 7 6 5 9 9 C 1.48184 * 120.00183 * 179.97438 * 7 6 5 10 10 C 1.39032 * 119.69017 * 202.38524 * 9 7 6 11 11 C 1.39454 * 118.95553 * 179.75406 * 10 9 7 12 12 N 1.39188 * 120.83054 * 180.29271 * 11 10 9 13 13 C 1.46505 * 119.99865 * 185.55513 * 12 11 10 14 14 C 1.46502 * 120.00534 * 5.54918 * 12 11 10 15 15 C 1.39415 * 118.33274 * 0.51222 * 11 10 9 16 16 C 1.38226 * 119.26536 * 359.75471 * 15 11 10 17 17 N 1.31652 * 120.99593 * 359.97081 * 16 15 11 18 18 C 1.46927 * 118.73581 * 53.86225 * 6 5 3 19 19 C 1.53622 * 108.53991 * 306.09514 * 18 6 5 20 20 C 1.53035 * 109.24556 * 54.85950 * 19 18 6 21 21 H 1.08998 * 109.46222 * 178.48874 * 20 19 18 22 22 N 1.46496 * 109.44965 * 58.52171 * 20 19 18 23 23 C 1.36939 * 120.00198 * 84.93999 * 22 20 19 24 24 H 1.08003 * 119.99760 * 0.02562 * 23 22 20 25 25 C 1.38808 * 120.00130 * 179.97438 * 23 22 20 26 26 N 1.31617 * 120.00101 * 179.97438 * 25 23 22 27 27 Si 1.86801 * 120.00077 * 0.02562 * 25 23 22 28 28 H 1.48496 * 109.47110 * 89.99723 * 27 25 23 29 29 H 1.48503 * 109.47016 * 209.99444 * 27 25 23 30 30 H 1.48502 * 109.46872 * 329.99766 * 27 25 23 31 31 H 1.09004 * 109.46382 * 300.00153 * 1 2 3 32 32 H 1.08993 * 109.47420 * 59.99706 * 1 2 3 33 33 H 1.08999 * 109.46856 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.46446 * 240.00304 * 2 1 3 35 35 H 1.09002 * 109.47302 * 120.00054 * 2 1 3 36 36 H 1.09008 * 109.58600 * 65.59515 * 5 3 2 37 37 H 1.09002 * 109.59168 * 305.17340 * 5 3 2 38 38 H 1.08006 * 120.52162 * 359.97438 * 10 9 7 39 39 H 1.08999 * 109.47191 * 89.99953 * 13 12 11 40 40 H 1.08997 * 109.47076 * 209.99422 * 13 12 11 41 41 H 1.08999 * 109.46748 * 329.99306 * 13 12 11 42 42 H 1.09003 * 109.46819 * 354.88000 * 14 12 11 43 43 H 1.08989 * 109.47599 * 114.87943 * 14 12 11 44 44 H 1.09003 * 109.47345 * 234.88868 * 14 12 11 45 45 H 1.08001 * 120.36462 * 179.72951 * 15 11 10 46 46 H 1.08003 * 119.50341 * 180.02562 * 16 15 11 47 47 H 1.08997 * 109.58720 * 65.92671 * 18 6 5 48 48 H 1.09003 * 109.58167 * 186.35359 * 18 6 5 49 49 H 1.09004 * 109.63852 * 294.86122 * 19 18 6 50 50 H 1.09007 * 109.42989 * 174.72835 * 19 18 6 51 51 H 0.97000 * 120.00080 * 264.93594 * 22 20 19 52 52 H 0.96998 * 120.00560 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6066 1.9816 0.8423 5 6 1.6351 2.1280 -1.3088 6 7 2.2409 3.4660 -1.3490 7 6 1.4805 4.5579 -1.5634 8 8 0.2828 4.4408 -1.7315 9 6 2.1061 5.9008 -1.6007 10 6 1.3313 7.0285 -1.3537 11 6 1.9368 8.2842 -1.3876 12 7 1.1995 9.4386 -1.1403 13 6 1.8235 10.7545 -1.2995 14 6 -0.2005 9.3379 -0.7209 15 6 3.2982 8.3547 -1.6800 16 6 3.9991 7.1877 -1.9198 17 7 3.4005 6.0160 -1.8752 18 6 3.6923 3.5903 -1.1572 19 6 4.0733 2.8890 0.1554 20 6 3.5656 1.4457 0.1219 21 1 3.8575 0.9366 1.0405 22 7 4.1486 0.7500 -1.0280 23 6 5.3870 0.1747 -0.9244 24 1 5.9337 0.2336 0.0052 25 6 5.9391 -0.4849 -2.0138 26 7 7.1296 -1.0374 -1.9144 27 14 4.9932 -0.5873 -3.6214 28 1 5.3341 0.5815 -4.4716 29 1 5.3583 -1.8393 -4.3316 30 1 3.5353 -0.5855 -3.3388 31 1 -0.3632 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8935 -0.5138 0.8900 36 1 0.5496 2.2169 -1.3540 37 1 1.9912 1.5401 -2.1547 38 1 0.2778 6.9332 -1.1355 39 1 1.6820 11.1023 -2.3228 40 1 1.3632 11.4609 -0.6088 41 1 2.8897 10.6793 -1.0855 42 1 -0.5129 8.2938 -0.7454 43 1 -0.3049 9.7245 0.2928 44 1 -0.8256 9.9200 -1.3981 45 1 3.7994 9.3106 -1.7191 46 1 5.0539 7.2378 -2.1462 47 1 4.2127 3.1192 -1.9909 48 1 3.9645 4.6444 -1.1024 49 1 3.6208 3.4145 0.9963 50 1 5.1578 2.8907 0.2658 51 1 3.6574 0.6967 -1.8627 52 1 7.5157 -1.4980 -2.6758 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037977952.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:54:31 Heat of formation + Delta-G solvation = 45.869330 kcal Electronic energy + Delta-G solvation = -31721.064282 eV Core-core repulsion = 27721.925207 eV Total energy + Delta-G solvation = -3999.139075 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.94550 -39.59402 -37.85402 -37.18769 -34.43539 -33.77553 -31.79531 -31.64258 -31.46402 -29.67642 -29.01239 -28.47709 -25.99300 -25.45169 -23.86800 -23.34982 -22.97616 -22.17936 -20.73357 -19.93489 -18.51612 -17.82782 -17.51113 -17.23682 -16.32965 -15.88806 -15.63969 -15.33279 -15.14363 -14.87318 -14.62061 -14.35787 -14.26196 -14.09214 -13.57164 -13.47528 -13.30271 -13.19947 -13.03179 -12.99484 -12.73683 -12.51682 -12.38911 -12.30825 -11.83628 -11.61997 -11.51838 -11.17781 -11.13072 -10.88976 -10.81623 -10.64651 -10.34188 -10.27904 -10.14258 -10.05053 -9.72957 -9.48983 -9.33802 -9.05136 -8.72182 -8.21164 -7.98201 -7.18837 -5.72253 -3.06359 0.67416 1.24376 2.56550 2.84341 3.20674 3.40790 3.44323 3.49555 3.78785 4.20233 4.41734 4.46670 4.63493 4.75803 4.82705 4.85947 4.96033 5.03098 5.12347 5.16110 5.19374 5.23830 5.29244 5.34948 5.47125 5.48888 5.58573 5.61313 5.64769 5.71725 5.72588 5.80808 5.85765 5.92541 6.04183 6.14230 6.23259 6.26379 6.34087 6.40570 6.52568 6.57670 6.68983 6.72097 6.78024 6.80967 6.88595 6.95993 7.08322 7.66014 7.81749 8.04909 8.33132 8.47148 9.26036 9.98998 10.19426 11.46427 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013743 B = 0.003131 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.947863 B = 8941.027296 C =10106.819187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.105 4.105 4 H 0.071 0.929 5 C 0.114 3.886 6 N -0.578 5.578 7 C 0.565 3.435 8 O -0.550 6.550 9 C 0.130 3.870 10 C -0.193 4.193 11 C 0.244 3.756 12 N -0.628 5.628 13 C 0.091 3.909 14 C 0.084 3.916 15 C -0.237 4.237 16 C 0.136 3.864 17 N -0.485 5.485 18 C 0.082 3.918 19 C -0.150 4.150 20 C 0.184 3.816 21 H 0.057 0.943 22 N -0.743 5.743 23 C -0.235 4.235 24 H 0.090 0.910 25 C 0.005 3.995 26 N -0.935 5.935 27 Si 0.877 3.123 28 H -0.284 1.284 29 H -0.292 1.292 30 H -0.278 1.278 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.144 0.856 39 H 0.052 0.948 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.136 0.864 46 H 0.163 0.837 47 H 0.075 0.925 48 H 0.134 0.866 49 H 0.046 0.954 50 H 0.077 0.923 51 H 0.360 0.640 52 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.907 22.907 3.623 26.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.125 4.125 4 H 0.089 0.911 5 C -0.008 4.008 6 N -0.308 5.308 7 C 0.352 3.648 8 O -0.429 6.429 9 C -0.007 4.007 10 C -0.219 4.219 11 C 0.133 3.867 12 N -0.339 5.339 13 C -0.052 4.052 14 C -0.059 4.059 15 C -0.262 4.262 16 C -0.022 4.022 17 N -0.200 5.200 18 C -0.040 4.040 19 C -0.191 4.191 20 C 0.074 3.926 21 H 0.075 0.925 22 N -0.387 5.387 23 C -0.365 4.365 24 H 0.108 0.892 25 C -0.190 4.190 26 N -0.584 5.584 27 Si 0.708 3.292 28 H -0.211 1.211 29 H -0.219 1.219 30 H -0.204 1.204 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.086 0.914 38 H 0.162 0.838 39 H 0.071 0.929 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.100 0.900 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.154 0.846 46 H 0.180 0.820 47 H 0.094 0.906 48 H 0.150 0.850 49 H 0.065 0.935 50 H 0.095 0.905 51 H 0.194 0.806 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -12.964 22.133 3.491 25.887 hybrid contribution -0.866 0.649 -1.096 1.541 sum -13.830 22.783 2.395 26.759 Atomic orbital electron populations 1.21860 0.96686 1.01108 1.01450 1.21440 0.94425 0.95764 1.03309 1.21788 0.97617 0.96076 0.97037 0.91093 1.21752 0.99029 0.81812 0.98187 1.48051 1.09646 1.05644 1.67426 1.17933 0.85838 0.83452 0.77603 1.90732 1.14303 1.86065 1.51775 1.20897 0.89809 0.93560 0.96428 1.21534 1.01685 0.90374 1.08280 1.17959 0.90897 0.86576 0.91248 1.46257 1.11383 1.03313 1.72966 1.21692 0.98947 0.83203 1.01349 1.21803 0.80807 1.03742 0.99509 1.21782 0.92942 1.00923 1.10556 1.22698 1.00317 0.86676 0.92475 1.67764 1.09245 1.26537 1.16483 1.22937 0.77423 1.05268 0.98365 1.22600 1.01998 0.98305 0.96197 1.20207 0.89300 0.91119 0.91982 0.92501 1.42823 1.19528 1.65848 1.10461 1.19054 0.91840 1.26495 0.99134 0.89227 1.24612 0.96468 1.00448 0.97475 1.69688 1.16315 1.41635 1.30737 0.86664 0.79658 0.77354 0.85521 1.21092 1.21877 1.20428 0.93162 0.92847 0.93090 0.91082 0.91549 0.89328 0.91432 0.83817 0.92950 0.91178 0.90947 0.89954 0.92432 0.92130 0.84614 0.81985 0.90646 0.84963 0.93502 0.90483 0.80629 0.93180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.67 37.16 0.36 -1.68 16 2 C -0.11 -1.75 5.19 -26.72 -0.14 -1.89 16 3 C -0.11 -1.72 2.14 -90.50 -0.19 -1.91 16 4 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 5 C 0.11 1.96 5.02 -3.71 -0.02 1.94 16 6 N -0.58 -9.96 2.97 -173.48 -0.51 -10.48 16 7 C 0.57 9.71 7.61 -12.18 -0.09 9.61 16 8 O -0.55 -10.38 15.96 5.35 0.09 -10.30 16 9 C 0.13 1.92 6.43 -83.06 -0.53 1.39 16 10 C -0.19 -2.41 8.88 -38.83 -0.34 -2.76 16 11 C 0.24 2.51 6.56 -83.63 -0.55 1.96 16 12 N -0.63 -4.93 3.40 -187.37 -0.64 -5.57 16 13 C 0.09 0.45 10.37 59.85 0.62 1.07 16 14 C 0.08 0.53 10.63 59.85 0.64 1.16 16 15 C -0.24 -2.19 9.31 -39.15 -0.36 -2.55 16 16 C 0.14 1.45 11.17 -17.63 -0.20 1.25 16 17 N -0.48 -6.78 6.40 -9.89 -0.06 -6.85 16 18 C 0.08 1.42 5.76 -3.49 -0.02 1.40 16 19 C -0.15 -2.62 5.79 -26.39 -0.15 -2.77 16 20 C 0.18 3.46 2.53 -67.89 -0.17 3.29 16 21 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 22 N -0.74 -16.86 3.52 -53.39 -0.19 -17.05 16 23 C -0.24 -6.41 10.41 -15.06 -0.16 -6.57 16 24 H 0.09 2.62 8.06 -52.48 -0.42 2.20 16 25 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 26 N -0.94 -29.17 13.97 55.49 0.78 -28.39 16 27 Si 0.88 22.26 27.74 -169.99 -4.71 17.54 16 28 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 29 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 30 H -0.28 -6.66 6.52 56.52 0.37 -6.29 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.71 6.70 -51.93 -0.35 0.36 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 1.27 7.70 -51.93 -0.40 0.87 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.09 1.49 5.72 -51.92 -0.30 1.19 16 37 H 0.07 1.25 6.64 -51.93 -0.34 0.90 16 38 H 0.14 1.72 5.62 -52.48 -0.29 1.43 16 39 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.07 0.24 8.07 -51.93 -0.42 -0.18 16 41 H 0.07 0.31 6.07 -51.93 -0.32 0.00 16 42 H 0.08 0.58 5.39 -51.93 -0.28 0.30 16 43 H 0.06 0.29 8.14 -51.94 -0.42 -0.13 16 44 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.14 0.87 6.16 -52.49 -0.32 0.55 16 46 H 0.16 1.29 8.06 -52.48 -0.42 0.87 16 47 H 0.08 1.50 7.73 -51.93 -0.40 1.10 16 48 H 0.13 2.14 4.01 -77.23 -0.31 1.83 16 49 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 51 H 0.36 8.27 3.80 -40.82 -0.16 8.12 16 52 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 397.05 15.07 5.98 5.98 Total: -1.00 -33.37 397.05 -8.81 -42.19 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -8.13 Total: 9.91 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -1.41 Total: 3.01 kcal Atomic # 7 Polarization: -67.71 SS G_CDS: -0.63 Total: -68.33 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.71 Total: 17.54 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.37 -8.81 -42.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037977952.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.056 kcal (2) G-P(sol) polarization free energy of solvation -33.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds