Wall clock time and date at job start Wed Apr 1 2020 05:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47068 * 2 1 4 4 H 1.08999 * 109.50081 * 305.06660 * 3 2 1 5 5 C 1.53622 * 109.43318 * 65.28780 * 3 2 1 6 6 N 1.46926 * 108.54473 * 174.72613 * 5 3 2 7 7 C 1.34777 * 120.63113 * 126.37267 * 6 5 3 8 8 O 1.21514 * 119.99653 * 348.92914 * 7 6 5 9 9 C 1.48180 * 120.00172 * 168.93503 * 7 6 5 10 10 C 1.39031 * 119.68955 * 172.34411 * 9 7 6 11 11 C 1.39452 * 118.95830 * 180.02562 * 10 9 7 12 12 N 1.39194 * 120.83535 * 179.97438 * 11 10 9 13 13 C 1.46501 * 119.99883 * 174.36754 * 12 11 10 14 14 C 1.46498 * 119.99748 * 354.37009 * 12 11 10 15 15 C 1.39417 * 118.33403 * 0.02562 * 11 10 9 16 16 C 1.38239 * 119.26590 * 0.24354 * 15 11 10 17 17 N 1.31646 * 120.98992 * 359.48399 * 16 15 11 18 18 C 1.46921 * 118.73781 * 306.09241 * 6 5 3 19 19 C 1.53195 * 108.77620 * 53.86226 * 18 6 5 20 20 C 1.53036 * 109.30968 * 305.36578 * 19 18 6 21 21 H 1.09003 * 109.46291 * 301.35529 * 20 19 18 22 22 N 1.46507 * 109.45989 * 181.38631 * 20 19 18 23 23 C 1.36930 * 119.99958 * 84.99668 * 22 20 19 24 24 H 1.08004 * 120.00629 * 359.97438 * 23 22 20 25 25 C 1.38816 * 119.99748 * 180.02562 * 23 22 20 26 26 N 1.31619 * 120.00002 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 119.99889 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47482 * 359.97438 * 27 25 23 29 29 H 1.48506 * 109.47277 * 119.99856 * 27 25 23 30 30 H 1.48499 * 109.47099 * 239.99790 * 27 25 23 31 31 H 1.08998 * 109.46920 * 300.00038 * 1 2 3 32 32 H 1.08995 * 109.47354 * 59.99831 * 1 2 3 33 33 H 1.08996 * 109.46840 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47602 * 240.00220 * 2 1 3 35 35 H 1.09003 * 109.47551 * 119.99533 * 2 1 3 36 36 H 1.09004 * 109.73807 * 54.98897 * 5 3 2 37 37 H 1.09002 * 109.66440 * 294.42221 * 5 3 2 38 38 H 1.07996 * 120.52167 * 0.02562 * 10 9 7 39 39 H 1.08992 * 109.47649 * 5.08185 * 13 12 11 40 40 H 1.08998 * 109.47137 * 125.08980 * 13 12 11 41 41 H 1.09006 * 109.46827 * 245.08248 * 13 12 11 42 42 H 1.09002 * 109.47382 * 89.99949 * 14 12 11 43 43 H 1.09006 * 109.46880 * 209.99369 * 14 12 11 44 44 H 1.09003 * 109.47186 * 329.99276 * 14 12 11 45 45 H 1.08001 * 120.36757 * 179.97438 * 15 11 10 46 46 H 1.08001 * 119.50430 * 179.75053 * 16 15 11 47 47 H 1.08999 * 109.58995 * 173.64971 * 18 6 5 48 48 H 1.09003 * 109.59061 * 294.07533 * 18 6 5 49 49 H 1.08998 * 109.49480 * 65.31559 * 19 18 6 50 50 H 1.08996 * 109.49813 * 185.37598 * 19 18 6 51 51 H 0.97001 * 119.99508 * 264.99675 * 22 20 19 52 52 H 0.97002 * 119.99860 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9823 -0.8410 5 6 1.6393 2.1263 1.3160 6 7 2.2450 3.4644 1.3506 7 6 1.4857 4.5565 1.5682 8 8 0.2740 4.4698 1.5377 9 6 2.1284 5.8628 1.8443 10 6 1.3501 7.0130 1.9094 11 6 1.9709 8.2344 2.1697 12 7 1.2295 9.4102 2.2428 13 6 1.8792 10.6623 2.6383 14 6 -0.2003 9.3956 1.9242 15 6 3.3528 8.2483 2.3538 16 6 4.0580 7.0624 2.2681 17 7 3.4428 5.9240 2.0261 18 6 3.6951 3.5889 1.1498 19 6 4.0736 2.8882 -0.1589 20 6 3.5652 1.4452 -0.1257 21 1 4.0006 0.9262 0.7282 22 7 3.9542 0.7621 -1.3621 23 6 5.1918 0.1852 -1.4653 24 1 5.8813 0.2341 -0.6355 25 6 5.5605 -0.4615 -2.6369 26 7 4.7204 -0.5206 -3.6484 27 14 7.2485 -1.2491 -2.7775 28 1 7.9971 -1.0449 -1.5113 29 1 7.0962 -2.7039 -3.0339 30 1 7.9944 -0.6242 -3.8992 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 2.0008 1.5396 2.1606 37 1 0.5541 2.2149 1.3678 38 1 0.2817 6.9615 1.7607 39 1 2.9510 10.4971 2.7467 40 1 1.7036 11.4198 1.8745 41 1 1.4660 11.0017 3.5882 42 1 -0.7723 9.1937 2.8299 43 1 -0.4921 10.3644 1.5187 44 1 -0.4004 8.6179 1.1871 45 1 3.8672 9.1760 2.5567 46 1 5.1291 7.0694 2.4061 47 1 3.9669 4.6428 1.0919 48 1 4.2209 3.1190 1.9811 49 1 3.6192 3.4149 -0.9981 50 1 5.1577 2.8901 -0.2722 51 1 3.3350 0.7185 -2.1075 52 1 4.9779 -0.9729 -4.4670 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037977955.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:54:40 Heat of formation + Delta-G solvation = 39.853103 kcal Electronic energy + Delta-G solvation = -31103.023478 eV Core-core repulsion = 27103.623520 eV Total energy + Delta-G solvation = -3999.399958 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.95210 -39.51464 -37.68063 -37.20455 -34.60238 -33.67071 -31.81014 -31.61358 -31.46525 -29.32717 -29.00318 -28.35725 -25.94746 -25.33190 -23.87202 -23.39383 -22.69973 -21.96904 -20.67419 -19.96356 -19.19084 -17.67436 -17.31692 -16.97709 -16.32807 -15.84790 -15.68861 -15.35651 -15.13298 -14.88524 -14.72284 -14.34080 -14.07238 -13.81037 -13.60017 -13.47216 -13.26424 -13.10824 -13.03393 -12.88990 -12.72846 -12.57488 -12.50438 -11.99218 -11.78581 -11.57315 -11.46392 -11.18498 -10.95077 -10.85678 -10.77652 -10.53955 -10.26820 -10.12088 -10.11261 -10.02460 -9.67290 -9.48118 -9.37429 -9.08170 -8.68163 -8.26811 -8.02345 -6.86360 -5.71004 -2.98595 0.60796 1.21152 2.55285 2.81068 3.18049 3.46228 3.52055 3.54112 3.81346 4.11690 4.37929 4.45665 4.63798 4.74295 4.80168 4.83829 4.93961 5.05778 5.11016 5.21624 5.26606 5.29973 5.33829 5.43594 5.47342 5.58552 5.61357 5.67858 5.70787 5.73697 5.78618 5.83065 5.96324 6.03431 6.18395 6.24078 6.26784 6.40694 6.49407 6.52566 6.60335 6.62983 6.66842 6.76522 6.85837 6.91907 6.98830 7.09074 7.22198 7.60521 7.76093 7.77206 8.30226 8.47595 9.58842 10.17878 10.52971 11.51771 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014457 B = 0.002583 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.348046 B =10836.235535 C =12162.907284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.102 4.102 4 H 0.069 0.931 5 C 0.116 3.884 6 N -0.582 5.582 7 C 0.567 3.433 8 O -0.545 6.545 9 C 0.127 3.873 10 C -0.188 4.188 11 C 0.244 3.756 12 N -0.627 5.627 13 C 0.087 3.913 14 C 0.088 3.912 15 C -0.238 4.238 16 C 0.135 3.865 17 N -0.487 5.487 18 C 0.079 3.921 19 C -0.151 4.151 20 C 0.182 3.818 21 H 0.047 0.953 22 N -0.721 5.721 23 C -0.232 4.232 24 H 0.070 0.930 25 C -0.016 4.016 26 N -0.933 5.933 27 Si 0.904 3.096 28 H -0.281 1.281 29 H -0.293 1.293 30 H -0.293 1.293 31 H 0.048 0.952 32 H 0.051 0.949 33 H 0.048 0.952 34 H 0.083 0.917 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.089 0.911 38 H 0.145 0.855 39 H 0.080 0.920 40 H 0.060 0.940 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.137 0.863 46 H 0.162 0.838 47 H 0.139 0.861 48 H 0.060 0.940 49 H 0.054 0.946 50 H 0.073 0.927 51 H 0.383 0.617 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.273 21.709 14.851 27.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.122 4.122 4 H 0.088 0.912 5 C -0.006 4.006 6 N -0.312 5.312 7 C 0.353 3.647 8 O -0.423 6.423 9 C -0.009 4.009 10 C -0.214 4.214 11 C 0.133 3.867 12 N -0.339 5.339 13 C -0.055 4.055 14 C -0.055 4.055 15 C -0.263 4.263 16 C -0.023 4.023 17 N -0.202 5.202 18 C -0.044 4.044 19 C -0.192 4.192 20 C 0.072 3.928 21 H 0.064 0.936 22 N -0.362 5.362 23 C -0.363 4.363 24 H 0.088 0.912 25 C -0.211 4.211 26 N -0.582 5.582 27 Si 0.735 3.265 28 H -0.206 1.206 29 H -0.220 1.220 30 H -0.220 1.220 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.102 0.898 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.107 0.893 38 H 0.163 0.837 39 H 0.098 0.902 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.089 0.911 44 H 0.092 0.908 45 H 0.155 0.845 46 H 0.180 0.820 47 H 0.155 0.845 48 H 0.078 0.922 49 H 0.072 0.928 50 H 0.092 0.908 51 H 0.217 0.783 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.391 20.955 14.816 26.708 hybrid contribution 0.412 0.386 -0.437 0.714 sum -6.979 21.342 14.380 26.664 Atomic orbital electron populations 1.21838 0.96881 1.00916 1.01298 1.21456 0.94313 0.95845 1.03404 1.21838 0.97766 0.96076 0.96567 0.91239 1.21912 0.99276 0.81486 0.97927 1.48003 1.09599 1.05846 1.67762 1.17918 0.86088 0.83164 0.77526 1.90735 1.13443 1.85104 1.53047 1.20951 0.89690 0.93554 0.96740 1.21547 1.01946 0.90439 1.07503 1.17982 0.90946 0.86329 0.91420 1.46275 1.08670 1.05861 1.73049 1.21768 0.98916 0.84987 0.99868 1.21733 0.79761 1.03055 1.00915 1.21819 0.92561 1.00804 1.11154 1.22691 1.00436 0.86975 0.92192 1.67799 1.09014 1.27917 1.15481 1.22976 0.77842 1.06098 0.97471 1.22680 1.01851 0.98752 0.95921 1.20237 0.90693 0.90947 0.90953 0.93550 1.42433 1.16430 1.64554 1.12760 1.19273 0.91790 1.26766 0.98480 0.91211 1.24718 0.98099 1.01809 0.96503 1.69673 1.35126 1.48683 1.04717 0.86162 0.84161 0.78862 0.77296 1.20612 1.22022 1.22047 0.93251 0.93003 0.93255 0.89829 0.92506 0.91516 0.89302 0.83736 0.90175 0.92145 0.92544 0.92804 0.91077 0.90792 0.84533 0.82049 0.84503 0.92201 0.92762 0.90841 0.78305 0.93692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.68 37.16 0.36 -1.86 16 2 C -0.11 -1.91 5.31 -26.73 -0.14 -2.05 16 3 C -0.10 -1.80 1.94 -90.28 -0.17 -1.98 16 4 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 5 C 0.12 1.85 5.36 -3.49 -0.02 1.83 16 6 N -0.58 -9.40 2.97 -173.49 -0.51 -9.91 16 7 C 0.57 9.32 7.63 -12.18 -0.09 9.23 16 8 O -0.55 -10.02 15.80 5.35 0.08 -9.94 16 9 C 0.13 1.79 6.57 -83.05 -0.55 1.24 16 10 C -0.19 -2.29 8.74 -38.84 -0.34 -2.63 16 11 C 0.24 2.40 6.56 -83.63 -0.55 1.85 16 12 N -0.63 -4.74 3.40 -187.37 -0.64 -5.38 16 13 C 0.09 0.40 10.63 59.85 0.64 1.04 16 14 C 0.09 0.54 10.14 59.85 0.61 1.15 16 15 C -0.24 -2.03 9.38 -39.14 -0.37 -2.40 16 16 C 0.13 1.29 11.17 -17.63 -0.20 1.09 16 17 N -0.49 -6.19 6.17 -9.89 -0.06 -6.25 16 18 C 0.08 1.23 5.81 -3.71 -0.02 1.20 16 19 C -0.15 -2.79 5.66 -26.61 -0.15 -2.94 16 20 C 0.18 3.64 2.19 -67.89 -0.15 3.49 16 21 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 22 N -0.72 -17.87 4.33 -53.38 -0.23 -18.10 16 23 C -0.23 -6.35 9.93 -15.06 -0.15 -6.50 16 24 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 25 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 26 N -0.93 -28.22 13.06 55.49 0.72 -27.49 16 27 Si 0.90 22.46 29.55 -169.99 -5.02 17.44 16 28 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 29 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 30 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 31 H 0.05 0.67 6.70 -51.93 -0.35 0.32 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 1.69 7.22 -51.93 -0.37 1.31 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.09 1.43 5.75 -51.93 -0.30 1.13 16 38 H 0.14 1.73 6.04 -52.49 -0.32 1.42 16 39 H 0.08 0.31 5.38 -51.93 -0.28 0.03 16 40 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 41 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 42 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.07 0.30 8.07 -51.93 -0.42 -0.12 16 44 H 0.07 0.51 6.51 -51.93 -0.34 0.17 16 45 H 0.14 0.77 5.86 -52.49 -0.31 0.47 16 46 H 0.16 1.07 8.06 -52.49 -0.42 0.64 16 47 H 0.14 2.04 4.18 -77.79 -0.33 1.72 16 48 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 49 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 50 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 51 H 0.38 10.24 7.51 -40.82 -0.31 9.93 16 52 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 403.84 15.07 6.09 6.09 Total: -1.00 -32.97 403.84 -9.31 -42.28 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -8.35 Total: 10.03 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -1.39 Total: 1.23 kcal Atomic # 7 Polarization: -66.42 SS G_CDS: -0.72 Total: -67.14 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.08 Total: -9.94 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.97 -9.31 -42.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037977955.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.134 kcal (2) G-P(sol) polarization free energy of solvation -32.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds