Wall clock time and date at job start Wed Apr 1 2020 05:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46931 * 2 1 4 4 H 1.09003 * 109.50007 * 304.93670 * 3 2 1 5 5 C 1.53187 * 109.49405 * 65.00312 * 3 2 1 6 6 N 1.46936 * 108.77640 * 174.58335 * 5 3 2 7 7 C 1.34781 * 120.62817 * 126.40973 * 6 5 3 8 8 O 1.21598 * 120.00184 * 354.21982 * 7 6 5 9 9 C 1.47423 * 119.99677 * 174.21590 * 7 6 5 10 10 C 1.39976 * 120.61168 * 306.20041 * 9 7 6 11 11 C 1.38326 * 118.37325 * 180.02562 * 10 9 7 12 12 C 1.38383 * 119.50559 * 0.02562 * 11 10 9 13 13 N 1.31844 * 121.21809 * 0.02562 * 12 11 10 14 14 C 1.32440 * 121.77286 * 359.65941 * 13 12 11 15 15 N 1.38263 * 119.82427 * 180.31110 * 14 13 12 16 16 C 1.46903 * 111.00141 * 305.24031 * 15 14 13 17 17 C 1.46902 * 110.99883 * 69.19452 * 15 14 13 18 18 C 1.46923 * 118.73515 * 306.39720 * 6 5 3 19 19 C 1.53188 * 108.77997 * 53.60695 * 18 6 5 20 20 C 1.53037 * 109.49774 * 184.84100 * 3 2 1 21 21 H 1.09005 * 109.46339 * 58.66373 * 20 3 2 22 22 N 1.46499 * 109.45924 * 298.70618 * 20 3 2 23 23 C 1.36938 * 119.99991 * 154.99845 * 22 20 3 24 24 H 1.07998 * 120.00185 * 0.02562 * 23 22 20 25 25 C 1.38812 * 120.00146 * 179.97438 * 23 22 20 26 26 N 1.31620 * 120.00397 * 179.97438 * 25 23 22 27 27 Si 1.86798 * 119.99784 * 0.02562 * 25 23 22 28 28 H 1.48505 * 109.47468 * 89.99890 * 27 25 23 29 29 H 1.48504 * 109.47275 * 209.99386 * 27 25 23 30 30 H 1.48495 * 109.47294 * 329.99274 * 27 25 23 31 31 H 1.09002 * 109.47039 * 299.99196 * 1 2 3 32 32 H 1.09004 * 109.47065 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47657 * 59.99686 * 1 2 3 34 34 H 1.08993 * 109.47346 * 120.00308 * 2 1 3 35 35 H 1.09002 * 109.47039 * 240.00804 * 2 1 3 36 36 H 1.08995 * 109.58951 * 294.36861 * 5 3 2 37 37 H 1.08998 * 109.58782 * 54.79921 * 5 3 2 38 38 H 1.08011 * 120.81420 * 0.02618 * 10 9 7 39 39 H 1.07998 * 120.25399 * 179.97438 * 11 10 9 40 40 H 1.07998 * 119.38938 * 179.97438 * 12 11 10 41 41 H 1.09001 * 109.47020 * 60.00053 * 16 15 14 42 42 H 1.09006 * 109.47059 * 180.02562 * 16 15 14 43 43 H 1.08992 * 109.47197 * 299.99814 * 16 15 14 44 44 H 1.09000 * 109.47449 * 55.00284 * 17 15 14 45 45 H 1.08997 * 109.47184 * 175.00408 * 17 15 14 46 46 H 1.09000 * 109.47245 * 294.99908 * 17 15 14 47 47 H 1.09004 * 109.58236 * 173.39047 * 18 6 5 48 48 H 1.08995 * 109.58640 * 293.80883 * 18 6 5 49 49 H 1.08999 * 109.50261 * 65.30993 * 19 18 6 50 50 H 1.08996 * 109.49640 * 185.38213 * 19 18 6 51 51 H 0.96995 * 120.00494 * 334.99921 * 22 20 3 52 52 H 0.96995 * 120.00552 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6064 1.9817 -0.8423 5 6 1.6350 2.1279 1.3088 6 7 2.2415 3.4656 1.3495 7 6 1.4815 4.5579 1.5639 8 8 0.2712 4.4548 1.6211 9 6 2.1176 5.8775 1.7292 10 6 3.1234 6.0694 2.6835 11 6 3.6881 7.3269 2.7996 12 6 3.2479 8.3501 1.9786 13 7 2.2983 8.1497 1.0862 14 6 1.7280 6.9648 0.9289 15 7 0.7401 6.7982 -0.0240 16 6 -0.3451 7.7697 0.1673 17 6 1.2962 6.8904 -1.3805 18 6 3.6921 3.5898 1.1523 19 6 4.0740 2.8881 -0.1548 20 6 3.5655 1.4450 -0.1217 21 1 3.8573 0.9360 -1.0404 22 7 4.1479 0.7485 1.0280 23 6 5.3860 0.1727 0.9243 24 1 5.9333 0.2324 -0.0048 25 6 5.9382 -0.4868 2.0138 26 7 7.1280 -1.0407 1.9141 27 14 4.9920 -0.5894 3.6212 28 1 4.1500 -1.8127 3.6228 29 1 5.9483 -0.6454 4.7559 30 1 4.1255 0.6082 3.7628 31 1 -0.3633 0.5137 0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5139 -0.8899 34 1 1.8933 -0.5138 0.8899 35 1 1.8933 -0.5137 -0.8901 36 1 0.5497 2.2173 1.3539 37 1 1.9908 1.5396 2.1546 38 1 3.4507 5.2556 3.3138 39 1 4.4662 7.5089 3.5261 40 1 3.6898 9.3312 2.0711 41 1 0.0536 8.7808 0.0843 42 1 -1.1089 7.6162 -0.5951 43 1 -0.7855 7.6328 1.1549 44 1 2.1098 6.1732 -1.4892 45 1 0.5163 6.6682 -2.1088 46 1 1.6751 7.8982 -1.5502 47 1 3.9640 4.6438 1.0940 48 1 4.2156 3.1209 1.9853 49 1 3.6217 3.4139 -0.9957 50 1 5.1583 2.8898 -0.2653 51 1 3.6567 0.6952 1.8626 52 1 7.5137 -1.5018 2.6753 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037978789.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:55:26 Heat of formation + Delta-G solvation = 34.453681 kcal Electronic energy + Delta-G solvation = -32602.300513 eV Core-core repulsion = 28602.666419 eV Total energy + Delta-G solvation = -3999.634094 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.12335 -39.68601 -37.74143 -37.09200 -34.57212 -33.87480 -32.69709 -31.75191 -30.84244 -29.85199 -28.74515 -27.77869 -25.88955 -25.18858 -24.01567 -23.84598 -23.08313 -21.78773 -20.86337 -20.08221 -18.50011 -17.92529 -17.38352 -17.16278 -16.88311 -16.06058 -15.42693 -15.24575 -15.03193 -14.54216 -14.48520 -14.24352 -14.16759 -13.80654 -13.62832 -13.46850 -13.32903 -13.26315 -12.96208 -12.78129 -12.47323 -12.46210 -12.40100 -12.12241 -11.91842 -11.87953 -11.61133 -11.27357 -11.12525 -10.95652 -10.85805 -10.38715 -10.36115 -10.23412 -10.19077 -10.00907 -9.80697 -9.65880 -9.57349 -9.14663 -8.96969 -8.75074 -8.31637 -7.30600 -5.81615 -3.16736 0.60269 0.91318 2.80278 3.12098 3.30382 3.34219 3.40956 3.44403 3.50707 4.18009 4.53422 4.53867 4.61060 4.81454 4.85979 5.00099 5.10704 5.14145 5.17504 5.19393 5.26303 5.33085 5.34679 5.42494 5.45018 5.51598 5.58265 5.64773 5.67260 5.67885 5.73618 5.75314 5.78437 5.82322 5.89892 6.03864 6.07361 6.13746 6.21432 6.28191 6.32270 6.45143 6.52704 6.57027 6.60270 6.67674 6.76791 6.90334 7.04693 7.55054 7.64781 7.95165 8.33983 8.37581 9.15970 9.88545 10.08652 11.36878 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012339 B = 0.003854 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.699925 B = 7262.898632 C = 8397.644949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.106 4.106 4 H 0.073 0.927 5 C 0.120 3.880 6 N -0.601 5.601 7 C 0.573 3.427 8 O -0.523 6.523 9 C -0.142 4.142 10 C -0.041 4.041 11 C -0.179 4.179 12 C 0.125 3.875 13 N -0.515 5.515 14 C 0.333 3.667 15 N -0.488 5.488 16 C 0.035 3.965 17 C 0.031 3.969 18 C 0.112 3.888 19 C -0.148 4.148 20 C 0.185 3.815 21 H 0.060 0.940 22 N -0.743 5.743 23 C -0.240 4.240 24 H 0.090 0.910 25 C 0.007 3.993 26 N -0.933 5.933 27 Si 0.877 3.123 28 H -0.284 1.284 29 H -0.292 1.292 30 H -0.279 1.279 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.065 0.935 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.159 0.841 41 H 0.042 0.958 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.077 0.923 46 H 0.039 0.961 47 H 0.069 0.931 48 H 0.079 0.921 49 H 0.051 0.949 50 H 0.078 0.922 51 H 0.360 0.640 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.832 17.100 -2.482 20.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.126 4.126 4 H 0.091 0.909 5 C -0.002 4.002 6 N -0.334 5.334 7 C 0.359 3.641 8 O -0.399 6.399 9 C -0.149 4.149 10 C -0.068 4.068 11 C -0.199 4.199 12 C -0.034 4.034 13 N -0.227 5.227 14 C 0.104 3.896 15 N -0.210 5.210 16 C -0.112 4.112 17 C -0.115 4.115 18 C -0.010 4.010 19 C -0.189 4.189 20 C 0.075 3.925 21 H 0.078 0.922 22 N -0.387 5.387 23 C -0.370 4.370 24 H 0.108 0.892 25 C -0.189 4.189 26 N -0.581 5.581 27 Si 0.708 3.292 28 H -0.210 1.210 29 H -0.218 1.218 30 H -0.205 1.205 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.083 0.917 38 H 0.162 0.838 39 H 0.161 0.839 40 H 0.176 0.824 41 H 0.060 0.940 42 H 0.093 0.907 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.096 0.904 46 H 0.058 0.942 47 H 0.087 0.913 48 H 0.097 0.903 49 H 0.070 0.930 50 H 0.097 0.903 51 H 0.194 0.806 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.751 17.151 -3.023 21.010 hybrid contribution 0.323 -0.012 1.736 1.766 sum -11.428 17.139 -1.287 20.640 Atomic orbital electron populations 1.21856 0.96573 1.01118 1.01561 1.21428 0.94530 0.95687 1.03240 1.21793 0.97289 0.96166 0.97337 0.90869 1.21678 0.99169 0.81411 0.97944 1.48054 1.08624 1.06286 1.70399 1.17723 0.86466 0.82994 0.76912 1.90754 1.13274 1.85520 1.50382 1.20670 0.99234 0.95629 0.99387 1.21822 0.91727 0.98000 0.95201 1.22087 1.02331 0.93504 1.01933 1.22708 0.91526 0.99293 0.89887 1.67804 1.10058 1.24136 1.20666 1.19673 0.90620 0.87103 0.92170 1.59836 1.07830 1.50979 1.02349 1.22326 0.92867 0.93018 1.02941 1.22405 1.00456 1.00891 0.87779 1.21786 0.79127 1.00147 0.99941 1.22481 1.02141 0.98814 0.95451 1.20184 0.89518 0.90578 0.92173 0.92188 1.42838 1.19677 1.65829 1.10351 1.19058 0.92094 1.26621 0.99186 0.89182 1.24624 0.96435 1.00325 0.97475 1.69686 1.16349 1.41267 1.30823 0.86678 0.79423 0.77859 0.85236 1.21023 1.21813 1.20527 0.92834 0.93094 0.93068 0.91217 0.91528 0.89127 0.91668 0.83787 0.83898 0.82418 0.93957 0.90728 0.91324 0.91378 0.90384 0.94197 0.91281 0.90274 0.93023 0.90317 0.80616 0.93084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.67 37.16 0.36 -1.59 16 2 C -0.11 -1.64 5.19 -26.73 -0.14 -1.78 16 3 C -0.11 -1.62 2.14 -90.50 -0.19 -1.81 16 4 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 5 C 0.12 1.90 5.04 -3.71 -0.02 1.88 16 6 N -0.60 -9.33 2.97 -174.04 -0.52 -9.85 16 7 C 0.57 9.21 6.81 -12.52 -0.09 9.13 16 8 O -0.52 -9.81 16.12 5.28 0.09 -9.72 16 9 C -0.14 -1.98 4.63 -104.65 -0.48 -2.47 16 10 C -0.04 -0.47 7.92 -38.90 -0.31 -0.78 16 11 C -0.18 -1.63 10.09 -39.50 -0.40 -2.02 16 12 C 0.13 1.19 11.16 -17.49 -0.20 1.00 16 13 N -0.51 -6.26 9.57 -12.20 -0.12 -6.38 16 14 C 0.33 4.50 5.33 -155.18 -0.83 3.67 16 15 N -0.49 -6.41 4.08 -188.74 -0.77 -7.18 16 16 C 0.04 0.40 9.39 60.07 0.56 0.96 16 17 C 0.03 0.34 9.47 60.07 0.57 0.91 16 18 C 0.11 1.70 5.35 -3.71 -0.02 1.68 16 19 C -0.15 -2.34 5.78 -26.61 -0.15 -2.50 16 20 C 0.19 3.25 2.53 -67.89 -0.17 3.07 16 21 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 22 N -0.74 -15.78 3.52 -53.38 -0.19 -15.97 16 23 C -0.24 -6.23 10.41 -15.06 -0.16 -6.39 16 24 H 0.09 2.54 8.06 -52.49 -0.42 2.11 16 25 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 26 N -0.93 -28.16 13.97 55.49 0.78 -27.39 16 27 Si 0.88 21.16 27.74 -169.99 -4.71 16.44 16 28 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 29 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 30 H -0.28 -6.29 6.52 56.52 0.37 -5.92 16 31 H 0.05 0.68 6.70 -51.93 -0.35 0.33 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 1.16 7.69 -51.93 -0.40 0.76 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.09 1.45 5.71 -51.93 -0.30 1.15 16 37 H 0.07 1.10 6.64 -51.93 -0.34 0.76 16 38 H 0.14 1.53 7.80 -52.48 -0.41 1.12 16 39 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 40 H 0.16 1.00 8.06 -52.49 -0.42 0.57 16 41 H 0.04 0.45 7.74 -51.93 -0.40 0.05 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.07 0.78 8.11 -51.93 -0.42 0.36 16 45 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.04 0.42 8.12 -51.93 -0.42 -0.01 16 47 H 0.07 0.93 5.38 -51.93 -0.28 0.65 16 48 H 0.08 1.33 7.74 -51.93 -0.40 0.93 16 49 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 50 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 51 H 0.36 7.70 3.80 -40.82 -0.16 7.54 16 52 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 404.37 15.07 6.09 6.09 Total: -1.00 -31.95 404.37 -9.65 -41.60 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -8.54 Total: 9.27 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -1.75 Total: 3.08 kcal Atomic # 7 Polarization: -65.94 SS G_CDS: -0.82 Total: -66.76 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.09 Total: -9.72 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.71 Total: 16.44 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.95 -9.65 -41.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037978789.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.050 kcal (2) G-P(sol) polarization free energy of solvation -31.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds