Wall clock time and date at job start Wed Apr 1 2020 05:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53007 * 109.47127 * 2 1 4 4 H 1.09000 * 109.49605 * 55.06608 * 3 2 1 5 5 C 1.53192 * 109.49730 * 294.99904 * 3 2 1 6 6 N 1.46922 * 108.77432 * 185.40986 * 5 3 2 7 7 C 1.34776 * 120.63394 * 233.58398 * 6 5 3 8 8 O 1.21599 * 119.99948 * 356.09311 * 7 6 5 9 9 C 1.47428 * 119.99870 * 176.08694 * 7 6 5 10 10 C 1.39974 * 120.60806 * 53.43501 * 9 7 6 11 11 C 1.38338 * 118.36598 * 180.26238 * 10 9 7 12 12 C 1.38373 * 119.50629 * 359.74696 * 11 10 9 13 13 N 1.31846 * 121.22257 * 0.02562 * 12 11 10 14 14 C 1.32439 * 121.77296 * 359.97438 * 13 12 11 15 15 N 1.38259 * 119.82322 * 179.97438 * 14 13 12 16 16 C 1.46892 * 111.00381 * 295.22477 * 15 14 13 17 17 C 1.46906 * 111.00097 * 59.18438 * 15 14 13 18 18 C 1.46930 * 118.73803 * 53.86676 * 6 5 3 19 19 C 1.53632 * 108.53947 * 306.09052 * 18 6 5 20 20 C 1.53038 * 109.49421 * 175.16179 * 3 2 1 21 21 H 1.09002 * 109.46338 * 301.33645 * 20 3 2 22 22 N 1.46502 * 109.46168 * 61.29863 * 20 3 2 23 23 C 1.36930 * 119.99934 * 204.99622 * 22 20 3 24 24 H 1.08002 * 120.00173 * 359.97438 * 23 22 20 25 25 C 1.38812 * 120.00183 * 179.97438 * 23 22 20 26 26 N 1.31626 * 119.99616 * 0.02562 * 25 23 22 27 27 Si 1.86795 * 120.00270 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47166 * 90.00208 * 27 25 23 29 29 H 1.48505 * 109.47322 * 210.00403 * 27 25 23 30 30 H 1.48495 * 109.47413 * 330.00263 * 27 25 23 31 31 H 1.08999 * 109.46635 * 59.99753 * 1 2 3 32 32 H 1.08992 * 109.47144 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46618 * 300.00250 * 1 2 3 34 34 H 1.08999 * 109.47221 * 240.00181 * 2 1 3 35 35 H 1.08999 * 109.47181 * 119.99712 * 2 1 3 36 36 H 1.09003 * 109.58466 * 65.63033 * 5 3 2 37 37 H 1.08994 * 109.70590 * 305.27377 * 5 3 2 38 38 H 1.08004 * 120.81920 * 0.02562 * 10 9 7 39 39 H 1.08003 * 120.24642 * 179.72410 * 11 10 9 40 40 H 1.08001 * 119.39131 * 180.02562 * 12 11 10 41 41 H 1.09002 * 109.47398 * 60.00520 * 16 15 14 42 42 H 1.09008 * 109.47387 * 180.02562 * 16 15 14 43 43 H 1.09004 * 109.47512 * 299.99960 * 16 15 14 44 44 H 1.08995 * 109.47111 * 64.65501 * 17 15 14 45 45 H 1.09001 * 109.46839 * 184.66320 * 17 15 14 46 46 H 1.08998 * 109.46540 * 304.65615 * 17 15 14 47 47 H 1.09002 * 109.58957 * 65.92239 * 18 6 5 48 48 H 1.08993 * 109.58790 * 186.34858 * 18 6 5 49 49 H 1.09001 * 109.63101 * 294.86562 * 19 18 6 50 50 H 1.08997 * 109.42820 * 174.72314 * 19 18 6 51 51 H 0.96999 * 119.99801 * 24.99799 * 22 20 3 52 52 H 0.97000 * 119.99688 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6066 1.9817 0.8424 5 6 1.6352 2.1280 -1.3088 6 7 2.2415 3.4657 -1.3493 7 6 1.4817 4.5580 -1.5637 8 8 0.2944 4.4365 -1.7965 9 6 2.0900 5.9000 -1.5159 10 6 3.2134 6.2015 -2.2946 11 6 3.7498 7.4738 -2.2096 12 6 3.1647 8.4055 -1.3705 13 7 2.1037 8.1036 -0.6482 14 6 1.5499 6.9013 -0.6912 15 7 0.4380 6.6284 0.0839 16 6 0.7637 6.6973 1.5146 17 6 -0.6703 7.5338 -0.2480 18 6 3.6930 3.5894 -1.1578 19 6 4.0741 2.8880 0.1549 20 6 3.5656 1.4449 0.1217 21 1 3.8575 0.9359 1.0403 22 7 4.1480 0.7485 -1.0281 23 6 5.3861 0.1727 -0.9246 24 1 5.9334 0.2323 0.0046 25 6 5.9378 -0.4876 -2.0138 26 7 5.2710 -0.5599 -3.1464 27 14 7.6270 -1.2725 -1.8728 28 1 7.4835 -2.6762 -1.4100 29 1 8.2936 -1.2544 -3.1997 30 1 8.4468 -0.5108 -0.8967 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 0.5497 2.2175 -1.3538 37 1 1.9888 1.5406 -2.1560 38 1 3.6530 5.4578 -2.9429 39 1 4.6191 7.7378 -2.7936 40 1 3.5847 9.3983 -1.3059 41 1 1.1222 7.6975 1.7579 42 1 -0.1284 6.4780 2.1013 43 1 1.5390 5.9670 1.7463 44 1 -0.9922 7.3534 -1.2736 45 1 -1.5031 7.3529 0.4315 46 1 -0.3376 8.5670 -0.1480 47 1 4.2132 3.1179 -1.9916 48 1 3.9659 4.6432 -1.1032 49 1 3.6219 3.4139 0.9957 50 1 5.1585 2.8892 0.2650 51 1 3.6567 0.6953 -1.8627 52 1 5.6566 -1.0210 -3.9077 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037978790.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:55:31 Heat of formation + Delta-G solvation = 32.715046 kcal Electronic energy + Delta-G solvation = -32480.242229 eV Core-core repulsion = 28480.532742 eV Total energy + Delta-G solvation = -3999.709487 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.05613 -39.53630 -37.58197 -37.03802 -34.44980 -33.74701 -32.61962 -31.64853 -30.76872 -29.38291 -28.43382 -27.71857 -25.73852 -25.14653 -23.91159 -23.76342 -23.32738 -21.73272 -20.77300 -19.96745 -18.40705 -17.42474 -17.28768 -17.04951 -16.80434 -15.93388 -15.35537 -15.16757 -14.86408 -14.52275 -14.37331 -14.14930 -13.96665 -13.85324 -13.49186 -13.37516 -13.26239 -13.15588 -12.83321 -12.71385 -12.43679 -12.37179 -12.21436 -12.05181 -11.81584 -11.71735 -11.37072 -11.07854 -10.99376 -10.81222 -10.75970 -10.28679 -10.24995 -10.17022 -10.11461 -9.91993 -9.76694 -9.55557 -9.49039 -9.06638 -8.92026 -8.69643 -8.15506 -6.98158 -5.80235 -3.08395 0.67182 0.96870 2.91890 3.24243 3.40155 3.46091 3.47339 3.50769 3.59156 4.24324 4.56267 4.62266 4.67075 4.88274 4.92085 5.13276 5.18857 5.25213 5.25446 5.33087 5.38290 5.38924 5.50568 5.52631 5.56747 5.58869 5.72525 5.73437 5.79257 5.81156 5.82598 5.84457 5.89519 5.95567 6.10763 6.17762 6.20095 6.22526 6.37786 6.41696 6.43578 6.58980 6.65991 6.67307 6.72463 6.79607 6.96269 7.04192 7.11293 7.63051 7.67548 7.77296 8.38347 8.47163 9.50102 10.07067 10.42433 11.42099 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012547 B = 0.003568 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.129968 B = 7845.871678 C = 9187.760632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.102 4.102 4 H 0.066 0.934 5 C 0.122 3.878 6 N -0.597 5.597 7 C 0.571 3.429 8 O -0.526 6.526 9 C -0.140 4.140 10 C -0.042 4.042 11 C -0.180 4.180 12 C 0.123 3.877 13 N -0.515 5.515 14 C 0.333 3.667 15 N -0.488 5.488 16 C 0.031 3.969 17 C 0.035 3.965 18 C 0.109 3.891 19 C -0.148 4.148 20 C 0.179 3.821 21 H 0.050 0.950 22 N -0.718 5.718 23 C -0.237 4.237 24 H 0.069 0.931 25 C -0.011 4.011 26 N -0.932 5.932 27 Si 0.903 3.097 28 H -0.291 1.291 29 H -0.293 1.293 30 H -0.283 1.283 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.147 0.853 39 H 0.143 0.857 40 H 0.158 0.842 41 H 0.040 0.960 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.040 0.960 47 H 0.086 0.914 48 H 0.069 0.931 49 H 0.047 0.953 50 H 0.072 0.928 51 H 0.384 0.616 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.984 15.898 5.742 18.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.122 4.122 4 H 0.084 0.916 5 C 0.000 4.000 6 N -0.329 5.329 7 C 0.357 3.643 8 O -0.402 6.402 9 C -0.146 4.146 10 C -0.069 4.069 11 C -0.199 4.199 12 C -0.036 4.036 13 N -0.227 5.227 14 C 0.104 3.896 15 N -0.210 5.210 16 C -0.116 4.116 17 C -0.112 4.112 18 C -0.014 4.014 19 C -0.189 4.189 20 C 0.069 3.931 21 H 0.068 0.932 22 N -0.360 5.360 23 C -0.368 4.368 24 H 0.087 0.913 25 C -0.207 4.207 26 N -0.580 5.580 27 Si 0.734 3.266 28 H -0.218 1.218 29 H -0.219 1.219 30 H -0.209 1.209 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.105 0.895 37 H 0.092 0.908 38 H 0.165 0.835 39 H 0.161 0.839 40 H 0.175 0.825 41 H 0.059 0.941 42 H 0.095 0.905 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.092 0.908 46 H 0.059 0.941 47 H 0.104 0.896 48 H 0.087 0.913 49 H 0.065 0.935 50 H 0.091 0.909 51 H 0.219 0.781 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.001 15.887 6.117 18.811 hybrid contribution 1.720 -0.271 -0.601 1.842 sum -6.282 15.617 5.516 17.713 Atomic orbital electron populations 1.21850 0.96792 1.00975 1.01407 1.21416 0.94299 0.95744 1.03308 1.21737 0.97259 0.96086 0.97120 0.91559 1.21669 0.98809 0.81277 0.98199 1.48018 1.08456 1.06331 1.70061 1.17695 0.86054 0.83260 0.77301 1.90749 1.14880 1.86165 1.48446 1.20705 0.97584 0.96054 1.00293 1.21876 0.92214 0.97062 0.95722 1.22086 1.02316 0.93998 1.01537 1.22683 0.90599 0.99486 0.90821 1.67779 1.11417 1.20586 1.22962 1.19637 0.90706 0.87054 0.92177 1.59833 1.03937 1.52222 1.05007 1.22408 1.02149 1.00971 0.86095 1.22347 0.92415 0.93830 1.02581 1.21995 0.79294 1.00022 1.00050 1.22582 1.01610 0.99282 0.95429 1.20216 0.89836 0.90547 0.92543 0.93208 1.42470 1.18999 1.63985 1.10589 1.19214 0.93571 1.26942 0.97058 0.91314 1.24686 0.98486 1.01492 0.96037 1.69651 1.38076 1.48065 1.02236 0.86257 0.84301 0.79393 0.76606 1.21850 1.21923 1.20893 0.92743 0.93224 0.93372 0.90510 0.92096 0.89515 0.90787 0.83549 0.83936 0.82503 0.94149 0.90521 0.91414 0.91102 0.90771 0.94104 0.89611 0.91276 0.93465 0.90930 0.78087 0.93560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.67 37.16 0.36 -1.74 16 2 C -0.11 -1.75 5.19 -26.72 -0.14 -1.89 16 3 C -0.10 -1.66 2.14 -90.50 -0.19 -1.85 16 4 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 5 C 0.12 2.08 5.01 -3.71 -0.02 2.06 16 6 N -0.60 -9.79 2.97 -173.77 -0.52 -10.31 16 7 C 0.57 9.66 6.86 -12.52 -0.09 9.57 16 8 O -0.53 -10.31 16.10 5.28 0.08 -10.23 16 9 C -0.14 -2.03 4.93 -104.65 -0.52 -2.55 16 10 C -0.04 -0.50 7.54 -38.89 -0.29 -0.80 16 11 C -0.18 -1.70 10.09 -39.49 -0.40 -2.10 16 12 C 0.12 1.22 11.16 -17.50 -0.20 1.03 16 13 N -0.52 -6.49 9.42 -12.20 -0.11 -6.60 16 14 C 0.33 4.68 5.33 -155.18 -0.83 3.85 16 15 N -0.49 -6.67 4.06 -188.74 -0.77 -7.43 16 16 C 0.03 0.35 9.46 60.06 0.57 0.92 16 17 C 0.04 0.41 9.52 60.07 0.57 0.98 16 18 C 0.11 1.72 5.30 -3.48 -0.02 1.71 16 19 C -0.15 -2.44 5.80 -26.38 -0.15 -2.59 16 20 C 0.18 3.28 2.53 -67.89 -0.17 3.11 16 21 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 22 N -0.72 -16.11 3.71 -53.38 -0.20 -16.31 16 23 C -0.24 -6.05 9.93 -15.06 -0.15 -6.20 16 24 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 25 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 26 N -0.93 -26.59 13.06 55.49 0.72 -25.86 16 27 Si 0.90 21.48 29.55 -169.99 -5.02 16.45 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 29 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 30 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 31 H 0.05 0.75 6.70 -51.93 -0.35 0.41 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 1.42 7.69 -51.93 -0.40 1.02 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.09 1.49 5.74 -51.93 -0.30 1.20 16 37 H 0.07 1.38 6.65 -51.93 -0.35 1.04 16 38 H 0.15 1.64 7.36 -52.48 -0.39 1.26 16 39 H 0.14 0.93 8.06 -52.48 -0.42 0.50 16 40 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.04 0.44 7.93 -51.93 -0.41 0.03 16 42 H 0.08 0.74 8.07 -51.92 -0.42 0.32 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.07 0.73 8.04 -51.93 -0.42 0.31 16 46 H 0.04 0.46 7.68 -51.93 -0.40 0.06 16 47 H 0.09 1.56 7.74 -51.93 -0.40 1.16 16 48 H 0.07 0.96 4.69 -51.93 -0.24 0.72 16 49 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 50 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 51 H 0.38 9.27 5.95 -40.82 -0.24 9.02 16 52 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 405.84 15.07 6.12 6.12 Total: -1.00 -30.69 405.84 -9.95 -40.65 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -8.51 Total: 10.41 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: -1.76 Total: 3.12 kcal Atomic # 7 Polarization: -65.65 SS G_CDS: -0.87 Total: -66.52 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.08 Total: -10.23 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -30.69 -9.95 -40.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037978790.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.362 kcal (2) G-P(sol) polarization free energy of solvation -30.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds