Wall clock time and date at job start Wed Apr 1 2020 05:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47235 * 2 1 4 4 H 1.08999 * 109.49679 * 55.06102 * 3 2 1 5 5 C 1.53190 * 109.49598 * 294.99902 * 3 2 1 6 6 N 1.46923 * 108.77648 * 185.37653 * 5 3 2 7 7 C 1.34769 * 120.63659 * 233.58392 * 6 5 3 8 8 O 1.21607 * 119.99642 * 5.80936 * 7 6 5 9 9 C 1.47420 * 120.00555 * 185.80715 * 7 6 5 10 10 C 1.39971 * 120.60709 * 53.82001 * 9 7 6 11 11 C 1.38342 * 118.36856 * 180.02562 * 10 9 7 12 12 C 1.38373 * 119.50445 * 0.24939 * 11 10 9 13 13 N 1.31843 * 121.21927 * 359.47873 * 12 11 10 14 14 C 1.32428 * 121.77710 * 0.53459 * 13 12 11 15 15 N 1.38264 * 119.82860 * 179.71050 * 14 13 12 16 16 C 1.46902 * 110.99850 * 304.89625 * 15 14 13 17 17 C 1.46893 * 111.00177 * 68.84931 * 15 14 13 18 18 C 1.46931 * 118.73288 * 53.86342 * 6 5 3 19 19 C 1.53623 * 108.54322 * 306.09039 * 18 6 5 20 20 C 1.53038 * 109.23987 * 54.86086 * 19 18 6 21 21 H 1.09003 * 109.45301 * 58.52542 * 20 19 18 22 22 N 1.46507 * 109.45959 * 178.48951 * 20 19 18 23 23 C 1.36927 * 120.00162 * 275.06748 * 22 20 19 24 24 H 1.08000 * 119.99983 * 359.97438 * 23 22 20 25 25 C 1.38809 * 120.00391 * 179.97438 * 23 22 20 26 26 N 1.31620 * 120.00345 * 180.02562 * 25 23 22 27 27 Si 1.86806 * 119.99778 * 0.02562 * 25 23 22 28 28 H 1.48498 * 109.47150 * 89.99932 * 27 25 23 29 29 H 1.48493 * 109.46999 * 209.99901 * 27 25 23 30 30 H 1.48500 * 109.47023 * 329.99766 * 27 25 23 31 31 H 1.08996 * 109.47377 * 299.99976 * 1 2 3 32 32 H 1.09001 * 109.47308 * 60.00210 * 1 2 3 33 33 H 1.09006 * 109.47176 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.47377 * 240.00024 * 2 1 3 35 35 H 1.09001 * 109.47308 * 119.99790 * 2 1 3 36 36 H 1.09006 * 109.58874 * 65.59183 * 5 3 2 37 37 H 1.09004 * 109.70640 * 305.23936 * 5 3 2 38 38 H 1.08002 * 120.81920 * 0.02562 * 10 9 7 39 39 H 1.08000 * 120.24529 * 179.97438 * 11 10 9 40 40 H 1.08004 * 119.38573 * 179.74922 * 12 11 10 41 41 H 1.09007 * 109.47160 * 59.99909 * 16 15 14 42 42 H 1.08999 * 109.47622 * 179.97438 * 16 15 14 43 43 H 1.09004 * 109.47411 * 300.00440 * 16 15 14 44 44 H 1.08996 * 109.46858 * 55.00487 * 17 15 14 45 45 H 1.09002 * 109.47318 * 175.00343 * 17 15 14 46 46 H 1.09005 * 109.47382 * 295.00636 * 17 15 14 47 47 H 1.09003 * 109.58864 * 65.92654 * 18 6 5 48 48 H 1.08999 * 109.58275 * 186.35123 * 18 6 5 49 49 H 1.08998 * 109.63746 * 294.86880 * 19 18 6 50 50 H 1.08997 * 109.45782 * 174.74370 * 19 18 6 51 51 H 0.97007 * 119.99790 * 95.06970 * 22 20 19 52 52 H 0.97000 * 120.00063 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6065 1.9817 0.8423 5 6 1.6351 2.1280 -1.3088 6 7 2.2408 3.4660 -1.3490 7 6 1.4805 4.5579 -1.5635 8 8 0.2702 4.4543 -1.6207 9 6 2.1160 5.8778 -1.7288 10 6 3.1215 6.0701 -2.6833 11 6 3.6864 7.3277 -2.7987 12 6 3.2506 8.3489 -1.9729 13 7 2.2984 8.1490 -1.0832 14 6 1.7237 6.9657 -0.9306 15 7 0.7329 6.7998 0.0193 16 6 1.2038 7.2112 1.3486 17 6 -0.4849 7.5300 -0.3570 18 6 3.6922 3.5903 -1.1571 19 6 4.0733 2.8890 0.1555 20 6 3.5655 1.4457 0.1221 21 1 3.9994 0.9280 -0.7335 22 7 3.9578 0.7615 1.3568 23 6 5.1963 0.1863 1.4570 24 1 5.8839 0.2366 0.6257 25 6 5.5682 -0.4615 2.6270 26 7 6.7589 -1.0139 2.7235 27 14 4.3786 -0.5491 4.0646 28 1 3.5467 -1.7734 3.9448 29 1 5.1425 -0.5923 5.3372 30 1 3.5009 0.6487 4.0546 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 0.5496 2.2169 -1.3542 37 1 1.9893 1.5409 -2.1561 38 1 3.4483 5.2568 -3.3143 39 1 4.4648 7.5098 -3.5249 40 1 3.6958 9.3289 -2.0618 41 1 1.4910 8.2624 1.3231 42 1 0.4049 7.0708 2.0767 43 1 2.0649 6.6062 1.6324 44 1 -0.8014 7.2197 -1.3528 45 1 -1.2760 7.3114 0.3603 46 1 -0.2808 8.6008 -0.3579 47 1 4.2128 3.1191 -1.9908 48 1 3.9645 4.6443 -1.1023 49 1 3.6206 3.4145 0.9964 50 1 5.1576 2.8907 0.2666 51 1 3.3400 0.7160 2.1033 52 1 7.0189 -1.4663 3.5412 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037978791.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:55:36 Heat of formation + Delta-G solvation = 32.235935 kcal Electronic energy + Delta-G solvation = -32132.165052 eV Core-core repulsion = 28132.434789 eV Total energy + Delta-G solvation = -3999.730263 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.18010 -39.66580 -37.70853 -37.11917 -34.82665 -33.93175 -32.77472 -31.75523 -30.90979 -29.86863 -28.84572 -27.76279 -25.84028 -25.22405 -24.12603 -23.91689 -22.36328 -21.83436 -20.82255 -20.20056 -19.41592 -17.68930 -17.40586 -17.24045 -16.96782 -16.13930 -15.45014 -15.32269 -15.04453 -14.69745 -14.35109 -14.22920 -14.15329 -13.74707 -13.63989 -13.51877 -13.39868 -13.29281 -12.87357 -12.75517 -12.63590 -12.39829 -12.35319 -12.16784 -11.98176 -11.86500 -11.78444 -11.39747 -11.03157 -11.02270 -10.79087 -10.44633 -10.30496 -10.25626 -10.19922 -10.11014 -9.74654 -9.67397 -9.58736 -9.25156 -8.93131 -8.77771 -8.47796 -7.28160 -5.79416 -3.14500 0.53862 0.84326 2.70463 3.02474 3.36231 3.39834 3.40902 3.44417 3.45534 4.12139 4.44568 4.51599 4.57360 4.74614 4.80671 4.95378 5.05697 5.09925 5.12596 5.20451 5.20981 5.25423 5.36153 5.37777 5.43209 5.48516 5.52783 5.60017 5.61193 5.66278 5.72272 5.74108 5.74829 5.81283 5.93725 6.02420 6.05285 6.07497 6.12101 6.26821 6.30686 6.35251 6.48215 6.58262 6.59941 6.71838 6.81673 6.96022 7.01876 7.45017 7.57145 7.96395 8.23870 8.39901 9.18375 9.91341 10.11504 11.38940 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012313 B = 0.003282 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.411140 B = 8529.240281 C = 8986.259698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.108 4.108 4 H 0.070 0.930 5 C 0.123 3.877 6 N -0.603 5.603 7 C 0.576 3.424 8 O -0.523 6.523 9 C -0.145 4.145 10 C -0.042 4.042 11 C -0.180 4.180 12 C 0.126 3.874 13 N -0.514 5.514 14 C 0.336 3.664 15 N -0.489 5.489 16 C 0.029 3.971 17 C 0.039 3.961 18 C 0.106 3.894 19 C -0.150 4.150 20 C 0.189 3.811 21 H 0.057 0.943 22 N -0.745 5.745 23 C -0.241 4.241 24 H 0.090 0.910 25 C 0.006 3.994 26 N -0.934 5.934 27 Si 0.880 3.120 28 H -0.284 1.284 29 H -0.292 1.292 30 H -0.277 1.277 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.067 0.933 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.159 0.841 41 H 0.044 0.956 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.076 0.924 46 H 0.036 0.964 47 H 0.069 0.931 48 H 0.074 0.926 49 H 0.058 0.942 50 H 0.079 0.921 51 H 0.361 0.639 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.154 17.207 -11.656 23.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.128 4.128 4 H 0.088 0.912 5 C 0.000 4.000 6 N -0.336 5.336 7 C 0.362 3.638 8 O -0.399 6.399 9 C -0.152 4.152 10 C -0.068 4.068 11 C -0.200 4.200 12 C -0.033 4.033 13 N -0.226 5.226 14 C 0.107 3.893 15 N -0.212 5.212 16 C -0.118 4.118 17 C -0.108 4.108 18 C -0.017 4.017 19 C -0.191 4.191 20 C 0.079 3.921 21 H 0.075 0.925 22 N -0.387 5.387 23 C -0.371 4.371 24 H 0.108 0.892 25 C -0.189 4.189 26 N -0.582 5.582 27 Si 0.711 3.289 28 H -0.210 1.210 29 H -0.218 1.218 30 H -0.203 1.203 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.085 0.915 38 H 0.162 0.838 39 H 0.161 0.839 40 H 0.176 0.824 41 H 0.063 0.937 42 H 0.094 0.906 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.095 0.905 46 H 0.055 0.945 47 H 0.087 0.913 48 H 0.093 0.907 49 H 0.077 0.923 50 H 0.098 0.902 51 H 0.194 0.806 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.984 17.221 -11.140 23.267 hybrid contribution 0.010 0.105 0.702 0.710 sum -10.974 17.327 -10.438 23.013 Atomic orbital electron populations 1.21851 0.96596 1.01111 1.01527 1.21456 0.94572 0.95704 1.03343 1.21818 0.97490 0.96216 0.97252 0.91156 1.21716 0.99587 0.81125 0.97539 1.48050 1.08404 1.06484 1.70617 1.17710 0.86451 0.82987 0.76646 1.90758 1.13305 1.85520 1.50337 1.20662 0.99267 0.95445 0.99804 1.21768 0.91900 0.97930 0.95226 1.22077 1.02432 0.93613 1.01903 1.22728 0.91474 0.99358 0.89733 1.67821 1.10231 1.23800 1.20743 1.19708 0.91272 0.86910 0.91366 1.59825 1.03262 1.56718 1.01383 1.22412 1.01306 0.99723 0.88400 1.22328 0.90472 0.95503 1.02479 1.22013 0.79418 1.01095 0.99195 1.22702 1.02426 0.98768 0.95176 1.20154 0.90755 0.90528 0.90618 0.92536 1.42783 1.16579 1.66246 1.13048 1.19045 0.90648 1.26996 1.00435 0.89220 1.24639 0.96388 1.00286 0.97624 1.69694 1.19229 1.41644 1.27617 0.86613 0.80986 0.77868 0.83456 1.21029 1.21829 1.20348 0.93046 0.92905 0.93097 0.91944 0.90567 0.88955 0.91473 0.83838 0.83917 0.82404 0.93738 0.90559 0.91343 0.91041 0.90509 0.94497 0.91264 0.90724 0.92314 0.90232 0.80607 0.93084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.67 37.15 0.36 -1.62 16 2 C -0.11 -1.69 5.31 -26.73 -0.14 -1.83 16 3 C -0.11 -1.66 1.92 -90.50 -0.17 -1.84 16 4 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 5 C 0.12 1.69 5.33 -3.71 -0.02 1.67 16 6 N -0.60 -8.25 2.97 -173.77 -0.52 -8.77 16 7 C 0.58 8.47 6.81 -12.53 -0.09 8.39 16 8 O -0.52 -9.14 16.12 5.27 0.08 -9.05 16 9 C -0.14 -1.84 4.63 -104.65 -0.48 -2.32 16 10 C -0.04 -0.40 7.91 -38.89 -0.31 -0.70 16 11 C -0.18 -1.38 10.09 -39.49 -0.40 -1.78 16 12 C 0.13 1.10 11.16 -17.50 -0.20 0.91 16 13 N -0.51 -6.01 9.57 -12.20 -0.12 -6.13 16 14 C 0.34 4.37 5.33 -155.18 -0.83 3.55 16 15 N -0.49 -6.43 4.08 -188.74 -0.77 -7.20 16 16 C 0.03 0.33 9.39 60.07 0.56 0.89 16 17 C 0.04 0.44 9.47 60.06 0.57 1.01 16 18 C 0.11 1.35 5.63 -3.48 -0.02 1.33 16 19 C -0.15 -2.42 5.67 -26.39 -0.15 -2.57 16 20 C 0.19 3.38 2.19 -67.89 -0.15 3.23 16 21 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 22 N -0.74 -16.65 4.14 -53.38 -0.22 -16.87 16 23 C -0.24 -6.48 10.41 -15.06 -0.16 -6.64 16 24 H 0.09 2.58 8.06 -52.49 -0.42 2.15 16 25 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 26 N -0.93 -28.71 13.97 55.49 0.78 -27.94 16 27 Si 0.88 21.80 27.74 -169.99 -4.71 17.09 16 28 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 29 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 30 H -0.28 -6.54 6.52 56.52 0.37 -6.17 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.63 6.70 -51.93 -0.35 0.29 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.08 1.33 7.22 -51.93 -0.37 0.95 16 36 H 0.09 1.33 5.71 -51.93 -0.30 1.04 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.14 1.10 7.79 -52.49 -0.41 0.69 16 39 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 40 H 0.16 0.89 8.06 -52.48 -0.42 0.46 16 41 H 0.04 0.49 7.74 -51.92 -0.40 0.09 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.07 0.87 8.11 -51.93 -0.42 0.44 16 45 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.04 0.39 8.11 -51.93 -0.42 -0.03 16 47 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 48 H 0.07 0.87 5.37 -51.93 -0.28 0.60 16 49 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 50 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 51 H 0.36 8.17 5.37 -40.82 -0.22 7.95 16 52 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 407.99 15.07 6.15 6.15 Total: -1.00 -33.12 407.99 -9.72 -42.84 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -8.68 Total: 8.13 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -1.71 Total: 1.74 kcal Atomic # 7 Polarization: -66.05 SS G_CDS: -0.85 Total: -66.90 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.08 Total: -9.05 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.71 Total: 17.09 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.12 -9.72 -42.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037978791.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.074 kcal (2) G-P(sol) polarization free energy of solvation -33.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds