Wall clock time and date at job start Wed Apr 1 2020 05:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47187 * 2 1 4 4 H 1.08998 * 109.49562 * 305.06565 * 3 2 1 5 5 C 1.53626 * 109.45880 * 65.27322 * 3 2 1 6 6 N 1.46924 * 108.54561 * 174.74550 * 5 3 2 7 7 C 1.34775 * 120.63582 * 126.36480 * 6 5 3 8 8 O 1.21606 * 119.99543 * 3.60849 * 7 6 5 9 9 C 1.47422 * 120.00314 * 183.32873 * 7 6 5 10 10 C 1.39975 * 120.60686 * 306.99473 * 9 7 6 11 11 C 1.38333 * 118.36822 * 179.78110 * 10 9 7 12 12 C 1.38374 * 119.50477 * 0.49556 * 11 10 9 13 13 N 1.31841 * 121.22046 * 359.74451 * 12 11 10 14 14 C 1.32429 * 121.77594 * 0.02562 * 13 12 11 15 15 N 1.38260 * 119.82826 * 179.97438 * 14 13 12 16 16 C 1.46900 * 111.00377 * 304.49267 * 15 14 13 17 17 C 1.46899 * 111.00050 * 68.44716 * 15 14 13 18 18 C 1.46930 * 118.73594 * 306.09386 * 6 5 3 19 19 C 1.53195 * 108.77595 * 53.85669 * 18 6 5 20 20 C 1.53034 * 109.31567 * 305.36845 * 19 18 6 21 21 H 1.09009 * 109.46014 * 301.34346 * 20 19 18 22 22 N 1.46496 * 109.46166 * 181.37251 * 20 19 18 23 23 C 1.36938 * 120.00336 * 85.00242 * 22 20 19 24 24 H 1.08000 * 119.99509 * 359.97438 * 23 22 20 25 25 C 1.38806 * 120.00102 * 180.02562 * 23 22 20 26 26 N 1.31616 * 120.00409 * 359.97438 * 25 23 22 27 27 Si 1.86806 * 119.99992 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.47327 * 59.99462 * 27 25 23 29 29 H 1.48494 * 109.47302 * 179.97438 * 27 25 23 30 30 H 1.48504 * 109.46904 * 299.99857 * 27 25 23 31 31 H 1.09002 * 109.47037 * 299.99838 * 1 2 3 32 32 H 1.08996 * 109.47263 * 60.00335 * 1 2 3 33 33 H 1.09008 * 109.46946 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.47357 * 239.99846 * 2 1 3 35 35 H 1.09009 * 109.47315 * 119.99995 * 2 1 3 36 36 H 1.09002 * 109.74241 * 54.99984 * 5 3 2 37 37 H 1.09004 * 109.66327 * 294.43602 * 5 3 2 38 38 H 1.08000 * 120.82127 * 0.02562 * 10 9 7 39 39 H 1.08001 * 120.24851 * 180.24753 * 11 10 9 40 40 H 1.08004 * 119.38772 * 179.77038 * 12 11 10 41 41 H 1.09002 * 109.46933 * 59.99732 * 16 15 14 42 42 H 1.08998 * 109.47898 * 179.97438 * 16 15 14 43 43 H 1.08999 * 109.46933 * 300.00243 * 16 15 14 44 44 H 1.09003 * 109.47295 * 55.02357 * 17 15 14 45 45 H 1.09004 * 109.47241 * 175.01657 * 17 15 14 46 46 H 1.08992 * 109.47230 * 295.01443 * 17 15 14 47 47 H 1.08997 * 109.58882 * 173.64565 * 18 6 5 48 48 H 1.08998 * 109.58151 * 293.92986 * 18 6 5 49 49 H 1.08997 * 109.49351 * 65.32285 * 19 18 6 50 50 H 1.08998 * 109.49727 * 185.41751 * 19 18 6 51 51 H 0.96998 * 119.99995 * 264.99466 * 22 20 19 52 52 H 0.96994 * 120.00332 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9822 -0.8410 5 6 1.6393 2.1270 1.3157 6 7 2.2449 3.4652 1.3496 7 6 1.4856 4.5573 1.5663 8 8 0.2986 4.4357 1.8014 9 6 2.0950 5.8990 1.5247 10 6 3.2224 6.1941 2.3000 11 6 3.7593 7.4666 2.2217 12 6 3.1676 8.4063 1.3961 13 7 2.1028 8.1105 0.6772 14 6 1.5510 6.9070 0.7107 15 7 0.4342 6.6409 -0.0596 16 6 -0.6438 7.5963 0.2281 17 6 0.7692 6.6403 -1.4899 18 6 3.6951 3.5896 1.1486 19 6 4.0735 2.8882 -0.1597 20 6 3.5652 1.4451 -0.1258 21 1 4.0009 0.9266 0.7284 22 7 3.9539 0.7615 -1.3618 23 6 5.1915 0.1845 -1.4651 24 1 5.8811 0.2338 -0.6354 25 6 5.5599 -0.4627 -2.6364 26 7 4.7197 -0.5223 -3.6477 27 14 7.2485 -1.2492 -2.7775 28 1 7.3986 -2.2907 -1.7297 29 1 7.3942 -1.8717 -4.1178 30 1 8.2948 -0.2110 -2.5970 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8899 35 1 1.8934 -0.5139 0.8900 36 1 2.0007 1.5408 2.1606 37 1 0.5541 2.2156 1.3674 38 1 3.6648 5.4455 2.9406 39 1 4.6313 7.7259 2.8037 40 1 3.5861 9.4003 1.3393 41 1 -0.3011 8.6076 0.0091 42 1 -1.5100 7.3645 -0.3916 43 1 -0.9201 7.5263 1.2802 44 1 1.5822 5.9376 -1.6725 45 1 -0.1055 6.3418 -2.0679 46 1 1.0793 7.6409 -1.7909 47 1 3.9668 4.6435 1.0900 48 1 4.2207 3.1225 1.9814 49 1 3.6191 3.4143 -0.9992 50 1 5.1576 2.8894 -0.2728 51 1 3.3346 0.7175 -2.1070 52 1 4.9773 -0.9743 -4.4663 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037978792.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:55:42 Heat of formation + Delta-G solvation = 30.647383 kcal Electronic energy + Delta-G solvation = -32111.055690 eV Core-core repulsion = 28111.256542 eV Total energy + Delta-G solvation = -3999.799148 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.15066 -39.58204 -37.59492 -37.08031 -34.73449 -33.81880 -32.72408 -31.69381 -30.85456 -29.49225 -28.59602 -27.72226 -25.72754 -25.18986 -24.11504 -23.82481 -22.60227 -21.80260 -20.81335 -20.08237 -19.23621 -17.42401 -17.28377 -17.08188 -16.93614 -16.06509 -15.40967 -15.27583 -14.94102 -14.68850 -14.30938 -14.16437 -13.95479 -13.82750 -13.51892 -13.45439 -13.31918 -13.21605 -12.97104 -12.76728 -12.52876 -12.35386 -12.11400 -12.07157 -11.84013 -11.80428 -11.58662 -11.27064 -10.93175 -10.87200 -10.71226 -10.32854 -10.24315 -10.20150 -10.15129 -10.02768 -9.76270 -9.63304 -9.58247 -9.16457 -8.89482 -8.72564 -8.40959 -6.97084 -5.78375 -3.07047 0.58224 0.87394 2.76343 3.08032 3.41367 3.46077 3.46407 3.47320 3.49035 4.16289 4.48449 4.53989 4.56728 4.78527 4.83784 5.03160 5.14815 5.16750 5.24795 5.25314 5.31344 5.36632 5.40784 5.47358 5.47778 5.56198 5.61316 5.67860 5.70356 5.72432 5.76010 5.77893 5.79263 5.92728 6.03343 6.10895 6.15106 6.17839 6.33745 6.38158 6.42131 6.47718 6.59643 6.64298 6.70372 6.83967 6.97814 7.06567 7.07106 7.50865 7.61709 7.66913 8.30639 8.39834 9.51241 10.08959 10.43887 11.43975 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012116 B = 0.003214 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.355111 B = 8709.097419 C = 9538.646631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.103 4.103 4 H 0.070 0.930 5 C 0.122 3.878 6 N -0.602 5.602 7 C 0.573 3.427 8 O -0.520 6.520 9 C -0.144 4.144 10 C -0.044 4.044 11 C -0.181 4.181 12 C 0.126 3.874 13 N -0.514 5.514 14 C 0.338 3.662 15 N -0.488 5.488 16 C 0.036 3.964 17 C 0.030 3.970 18 C 0.101 3.899 19 C -0.150 4.150 20 C 0.184 3.816 21 H 0.047 0.953 22 N -0.720 5.720 23 C -0.239 4.239 24 H 0.069 0.931 25 C -0.011 4.011 26 N -0.932 5.932 27 Si 0.904 3.096 28 H -0.286 1.286 29 H -0.292 1.292 30 H -0.287 1.287 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.083 0.917 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.091 0.909 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.159 0.841 41 H 0.041 0.959 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.079 0.921 46 H 0.040 0.960 47 H 0.076 0.924 48 H 0.068 0.932 49 H 0.058 0.942 50 H 0.074 0.926 51 H 0.384 0.616 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.603 15.912 11.983 20.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.123 4.123 4 H 0.088 0.912 5 C 0.000 4.000 6 N -0.335 5.335 7 C 0.359 3.641 8 O -0.396 6.396 9 C -0.151 4.151 10 C -0.070 4.070 11 C -0.201 4.201 12 C -0.033 4.033 13 N -0.226 5.226 14 C 0.109 3.891 15 N -0.211 5.211 16 C -0.111 4.111 17 C -0.116 4.116 18 C -0.023 4.023 19 C -0.191 4.191 20 C 0.074 3.926 21 H 0.065 0.935 22 N -0.360 5.360 23 C -0.370 4.370 24 H 0.087 0.913 25 C -0.207 4.207 26 N -0.580 5.580 27 Si 0.735 3.265 28 H -0.213 1.213 29 H -0.218 1.218 30 H -0.214 1.214 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.102 0.898 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.110 0.890 38 H 0.162 0.838 39 H 0.161 0.839 40 H 0.176 0.824 41 H 0.060 0.940 42 H 0.094 0.906 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.097 0.903 46 H 0.058 0.942 47 H 0.094 0.906 48 H 0.086 0.914 49 H 0.077 0.923 50 H 0.093 0.907 51 H 0.218 0.782 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.646 15.898 11.665 20.808 hybrid contribution 1.678 -0.221 -0.169 1.701 sum -4.969 15.677 11.496 20.065 Atomic orbital electron populations 1.21839 0.96782 1.00979 1.01357 1.21449 0.94403 0.95709 1.03410 1.21853 0.97529 0.96218 0.96729 0.91158 1.21834 0.99481 0.81010 0.97672 1.48060 1.08395 1.06529 1.70496 1.17709 0.86044 0.83235 0.77087 1.90766 1.14769 1.86092 1.47991 1.20676 0.97782 0.95998 1.00637 1.21785 0.92329 0.97095 0.95822 1.22067 1.02316 0.93963 1.01784 1.22719 0.90428 0.99546 0.90623 1.67823 1.11436 1.20964 1.22376 1.19692 0.90404 0.87019 0.92010 1.59848 1.04783 1.50232 1.06209 1.22328 0.93071 0.93253 1.02482 1.22423 1.02444 1.01089 0.85659 1.22049 0.79670 1.01220 0.99322 1.22665 1.02053 0.99313 0.95059 1.20178 0.90879 0.90403 0.91163 0.93467 1.42400 1.16467 1.64388 1.12746 1.19163 0.91844 1.27426 0.98582 0.91333 1.24710 0.98058 1.01521 0.96431 1.69642 1.35257 1.48351 1.04730 0.86320 0.84216 0.79192 0.76746 1.21310 1.21764 1.21370 0.93186 0.92978 0.93231 0.89832 0.92499 0.91674 0.89031 0.83799 0.83949 0.82425 0.94004 0.90650 0.91340 0.91222 0.90255 0.94156 0.90550 0.91400 0.92329 0.90711 0.78197 0.93477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.68 37.16 0.36 -1.77 16 2 C -0.11 -1.80 5.31 -26.73 -0.14 -1.94 16 3 C -0.10 -1.69 1.93 -90.27 -0.17 -1.86 16 4 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 5 C 0.12 1.79 5.35 -3.49 -0.02 1.77 16 6 N -0.60 -8.62 2.97 -173.77 -0.52 -9.14 16 7 C 0.57 8.80 6.87 -12.52 -0.09 8.72 16 8 O -0.52 -9.49 16.08 5.27 0.08 -9.41 16 9 C -0.14 -1.92 4.93 -104.65 -0.52 -2.43 16 10 C -0.04 -0.44 7.54 -38.90 -0.29 -0.73 16 11 C -0.18 -1.47 10.09 -39.50 -0.40 -1.87 16 12 C 0.13 1.16 11.16 -17.50 -0.20 0.96 16 13 N -0.51 -6.25 9.57 -12.20 -0.12 -6.37 16 14 C 0.34 4.58 5.32 -155.19 -0.83 3.75 16 15 N -0.49 -6.67 4.05 -188.75 -0.76 -7.43 16 16 C 0.04 0.41 9.39 60.06 0.56 0.97 16 17 C 0.03 0.37 9.46 60.06 0.57 0.94 16 18 C 0.10 1.31 5.51 -3.71 -0.02 1.29 16 19 C -0.15 -2.48 5.66 -26.61 -0.15 -2.63 16 20 C 0.18 3.41 2.19 -67.89 -0.15 3.26 16 21 H 0.05 0.90 8.08 -51.92 -0.42 0.48 16 22 N -0.72 -16.97 4.33 -53.39 -0.23 -17.20 16 23 C -0.24 -6.30 9.93 -15.06 -0.15 -6.45 16 24 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 25 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 26 N -0.93 -27.38 13.06 55.49 0.72 -26.65 16 27 Si 0.90 21.81 29.55 -169.99 -5.02 16.78 16 28 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 29 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 30 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 31 H 0.05 0.65 6.70 -51.93 -0.35 0.30 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 34 H 0.08 1.61 7.21 -51.93 -0.37 1.24 16 35 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.09 1.41 5.75 -51.93 -0.30 1.11 16 38 H 0.14 1.17 7.35 -52.49 -0.39 0.78 16 39 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 40 H 0.16 0.94 8.06 -52.48 -0.42 0.52 16 41 H 0.04 0.46 7.75 -51.93 -0.40 0.06 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.07 0.92 8.11 -51.93 -0.42 0.50 16 45 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 46 H 0.04 0.46 8.11 -51.93 -0.42 0.04 16 47 H 0.08 0.90 4.70 -51.93 -0.24 0.65 16 48 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 50 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 51 H 0.38 9.84 7.51 -40.82 -0.31 9.53 16 52 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 409.86 15.07 6.18 6.18 Total: -1.00 -32.03 409.86 -10.05 -42.08 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -8.66 Total: 9.57 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -1.72 Total: 1.58 kcal Atomic # 7 Polarization: -65.89 SS G_CDS: -0.90 Total: -66.79 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.08 Total: -9.41 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.03 -10.05 -42.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037978792.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.730 kcal (2) G-P(sol) polarization free energy of solvation -32.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds