Wall clock time and date at job start Wed Apr 1 2020 05:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47117 * 2 1 4 4 H 1.09000 * 109.50164 * 55.06287 * 3 2 1 5 5 C 1.53191 * 109.49567 * 294.99852 * 3 2 1 6 6 N 1.46925 * 108.77514 * 185.41679 * 5 3 2 7 7 C 1.34774 * 120.63105 * 233.63155 * 6 5 3 8 8 O 1.21550 * 120.00084 * 355.95712 * 7 6 5 9 9 C 1.47840 * 120.00253 * 175.96274 * 7 6 5 10 10 C 1.39965 * 120.93675 * 54.05537 * 9 7 6 11 11 N 1.32139 * 118.92220 * 179.72147 * 10 9 7 12 12 C 1.31885 * 120.96045 * 0.56415 * 11 10 9 13 13 N 1.31851 * 122.10057 * 359.70279 * 12 11 10 14 14 C 1.32163 * 120.96558 * 0.02562 * 13 12 11 15 15 C 1.50700 * 120.53860 * 180.02562 * 14 13 12 16 16 C 1.53007 * 109.46790 * 305.16950 * 15 14 13 17 17 C 1.53003 * 109.47493 * 65.16561 * 15 14 13 18 18 C 1.46928 * 118.73895 * 53.60608 * 6 5 3 19 19 C 1.53184 * 108.77415 * 306.39189 * 18 6 5 20 20 C 1.53038 * 109.31392 * 54.64073 * 19 18 6 21 21 H 1.08998 * 109.46240 * 178.61289 * 20 19 18 22 22 N 1.46499 * 109.46307 * 58.64939 * 20 19 18 23 23 C 1.36931 * 119.99840 * 84.93576 * 22 20 19 24 24 H 1.08002 * 120.00187 * 359.97438 * 23 22 20 25 25 C 1.38811 * 120.00364 * 180.02562 * 23 22 20 26 26 N 1.31625 * 119.99427 * 359.97438 * 25 23 22 27 27 Si 1.86795 * 120.00422 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.47402 * 90.00027 * 27 25 23 29 29 H 1.48509 * 109.46905 * 209.99787 * 27 25 23 30 30 H 1.48497 * 109.46992 * 329.99601 * 27 25 23 31 31 H 1.09005 * 109.46839 * 60.00103 * 1 2 3 32 32 H 1.08994 * 109.47279 * 300.00620 * 1 2 3 33 33 H 1.09000 * 109.47533 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.46922 * 119.99961 * 2 1 3 35 35 H 1.08999 * 109.47088 * 239.99819 * 2 1 3 36 36 H 1.09003 * 109.58877 * 305.19713 * 5 3 2 37 37 H 1.08995 * 109.58933 * 65.48324 * 5 3 2 38 38 H 1.08003 * 120.54022 * 359.96837 * 10 9 7 39 39 H 1.08007 * 118.94627 * 179.72850 * 12 11 10 40 40 H 1.08994 * 109.47689 * 185.17116 * 15 14 13 41 41 H 1.09003 * 109.47086 * 300.00009 * 16 15 14 42 42 H 1.09000 * 109.47000 * 60.00088 * 16 15 14 43 43 H 1.08995 * 109.46960 * 180.02562 * 16 15 14 44 44 H 1.08998 * 109.46618 * 60.00506 * 17 15 14 45 45 H 1.09005 * 109.47127 * 180.02562 * 17 15 14 46 46 H 1.09005 * 109.46759 * 300.00259 * 17 15 14 47 47 H 1.08992 * 109.58842 * 66.18336 * 18 6 5 48 48 H 1.08998 * 109.58516 * 186.60619 * 18 6 5 49 49 H 1.09011 * 109.49718 * 174.58565 * 19 18 6 50 50 H 1.08997 * 109.50390 * 294.65087 * 19 18 6 51 51 H 0.96998 * 120.00137 * 264.93212 * 22 20 19 52 52 H 0.97000 * 119.99643 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9817 0.8423 5 6 1.6351 2.1279 -1.3088 6 7 2.2416 3.4655 -1.3494 7 6 1.4816 4.5579 -1.5630 8 8 0.2951 4.4365 -1.7971 9 6 2.0911 5.9039 -1.5125 10 6 3.2073 6.2182 -2.2963 11 7 3.7166 7.4353 -2.2241 12 6 3.1953 8.3424 -1.4211 13 7 2.1479 8.0872 -0.6619 14 6 1.5721 6.8976 -0.6752 15 6 0.3751 6.6166 0.1960 16 6 0.7159 6.9426 1.6516 17 6 -0.8013 7.4829 -0.2585 18 6 3.6923 3.5897 -1.1523 19 6 4.0740 2.8880 0.1547 20 6 3.5656 1.4449 0.1216 21 1 3.8574 0.9359 1.0403 22 7 4.1480 0.7484 -1.0281 23 6 5.3860 0.1726 -0.9245 24 1 5.9333 0.2322 0.0047 25 6 5.9382 -0.4869 -2.0140 26 7 5.2714 -0.5592 -3.1465 27 14 7.6268 -1.2730 -1.8724 28 1 7.4821 -2.6772 -1.4112 29 1 8.2944 -1.2540 -3.1989 30 1 8.4463 -0.5128 -0.8949 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 0.5139 0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5138 0.8900 35 1 1.8933 -0.5139 -0.8900 36 1 1.9908 1.5397 -2.1547 37 1 0.5496 2.2150 -1.3551 38 1 3.6428 5.4791 -2.9525 39 1 3.6404 9.3258 -1.3845 40 1 0.1044 5.5640 0.1132 41 1 1.5540 6.3254 1.9755 42 1 0.9865 7.9952 1.7344 43 1 -0.1497 6.7388 2.2818 44 1 -1.0442 7.2506 -1.2954 45 1 -1.6670 7.2799 0.3720 46 1 -0.5307 8.5355 -0.1756 47 1 4.2157 3.1207 -1.9853 48 1 3.9642 4.6437 -1.0941 49 1 5.1586 2.8891 0.2650 50 1 3.6224 3.4141 0.9957 51 1 3.6566 0.6951 -1.8627 52 1 5.6574 -1.0197 -3.9080 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037989684.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:45 Heat of formation + Delta-G solvation = 12.808556 kcal Electronic energy + Delta-G solvation = -32418.260450 eV Core-core repulsion = 28417.687752 eV Total energy + Delta-G solvation = -4000.572697 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.61528 -39.85842 -37.93292 -36.25443 -34.63610 -33.83292 -33.17576 -31.91367 -31.66712 -29.51581 -28.55341 -27.29954 -26.03634 -25.16482 -24.30507 -23.80582 -23.50379 -21.03828 -20.91777 -20.16915 -18.52184 -18.14014 -17.39952 -17.10417 -16.83889 -16.15226 -15.25082 -14.95099 -14.85425 -14.59845 -14.41804 -14.23558 -14.05509 -13.88279 -13.70297 -13.34738 -13.29464 -13.23977 -13.05164 -12.62636 -12.35194 -12.31179 -11.88722 -11.78840 -11.72445 -11.49255 -11.47261 -11.15573 -11.07860 -11.01632 -10.87243 -10.84020 -10.62047 -10.36555 -10.32374 -10.22098 -9.88974 -9.86345 -9.61326 -9.54412 -9.43947 -8.97964 -8.37649 -7.03796 -5.84343 -3.13096 0.42790 0.82029 2.59604 3.03737 3.38293 3.44343 3.45697 3.52625 3.74987 3.92459 4.10539 4.37725 4.52944 4.68192 4.90715 4.96489 4.97656 5.04190 5.19216 5.23836 5.26017 5.39857 5.44928 5.47588 5.50546 5.53176 5.62927 5.68035 5.71567 5.73236 5.74780 5.83268 5.83790 5.99551 6.03520 6.07241 6.08003 6.09346 6.18674 6.25854 6.29996 6.34999 6.48629 6.52492 6.62415 6.68578 6.70179 6.85598 6.91803 7.49606 7.63989 7.81985 8.13064 8.33982 9.45989 10.01407 10.36584 11.37861 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012390 B = 0.003551 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.395581 B = 7882.793435 C = 9221.798403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C -0.103 4.103 4 H 0.066 0.934 5 C 0.119 3.881 6 N -0.589 5.589 7 C 0.566 3.434 8 O -0.536 6.536 9 C -0.225 4.225 10 C 0.184 3.816 11 N -0.523 5.523 12 C 0.306 3.694 13 N -0.516 5.516 14 C 0.228 3.772 15 C -0.055 4.055 16 C -0.140 4.140 17 C -0.134 4.134 18 C 0.108 3.892 19 C -0.149 4.149 20 C 0.179 3.821 21 H 0.052 0.948 22 N -0.718 5.718 23 C -0.239 4.239 24 H 0.069 0.931 25 C -0.009 4.009 26 N -0.931 5.931 27 Si 0.903 3.097 28 H -0.291 1.291 29 H -0.292 1.292 30 H -0.283 1.283 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.176 0.824 39 H 0.199 0.801 40 H 0.099 0.901 41 H 0.052 0.948 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.064 0.936 46 H 0.062 0.938 47 H 0.091 0.909 48 H 0.066 0.934 49 H 0.075 0.925 50 H 0.047 0.953 51 H 0.384 0.616 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.130 14.122 7.010 18.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.123 4.123 4 H 0.085 0.915 5 C -0.003 4.003 6 N -0.320 5.320 7 C 0.352 3.648 8 O -0.414 6.414 9 C -0.233 4.233 10 C 0.017 3.983 11 N -0.236 5.236 12 C 0.019 3.981 13 N -0.230 5.230 14 C 0.081 3.919 15 C -0.074 4.074 16 C -0.197 4.197 17 C -0.192 4.192 18 C -0.015 4.015 19 C -0.190 4.190 20 C 0.068 3.932 21 H 0.070 0.930 22 N -0.360 5.360 23 C -0.371 4.371 24 H 0.087 0.913 25 C -0.206 4.206 26 N -0.579 5.579 27 Si 0.735 3.265 28 H -0.218 1.218 29 H -0.219 1.219 30 H -0.208 1.208 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.107 0.893 38 H 0.193 0.807 39 H 0.216 0.784 40 H 0.117 0.883 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.109 0.891 48 H 0.084 0.916 49 H 0.094 0.906 50 H 0.066 0.934 51 H 0.219 0.781 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.156 14.883 6.946 18.804 hybrid contribution 0.837 -1.269 -0.400 1.572 sum -8.319 13.614 6.546 17.245 Atomic orbital electron populations 1.21857 0.96764 1.01126 1.01337 1.21416 0.94301 0.95585 1.03488 1.21756 0.97427 0.96249 0.96849 0.91529 1.21771 0.98855 0.80989 0.98680 1.48085 1.08769 1.06391 1.68726 1.17786 0.86112 0.83345 0.77547 1.90772 1.14981 1.86330 1.49335 1.21656 1.00544 0.97583 1.03486 1.23567 0.88558 0.93351 0.92807 1.68475 1.31827 1.02164 1.21134 1.25155 0.88076 0.98895 0.85989 1.68245 1.10790 1.20779 1.23139 1.21746 0.93002 0.86939 0.90163 1.20334 0.90809 1.02470 0.93773 1.21783 1.01655 1.02574 0.93711 1.21705 0.96315 0.99473 1.01697 1.21943 0.78911 0.99945 1.00656 1.22524 1.01965 0.99343 0.95171 1.20216 0.89704 0.90503 0.92752 0.92993 1.42463 1.19055 1.63995 1.10518 1.19203 0.93550 1.27191 0.97110 0.91270 1.24691 0.98515 1.01364 0.95995 1.69644 1.38088 1.47973 1.02234 0.86252 0.84215 0.79370 0.76684 1.21809 1.21865 1.20849 0.92766 0.93373 0.93105 0.91948 0.90403 0.90310 0.89318 0.80734 0.78409 0.88324 0.92837 0.91412 0.91755 0.92351 0.91719 0.91918 0.89066 0.91598 0.90608 0.93400 0.78098 0.93492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.67 37.16 0.36 -1.59 16 2 C -0.11 -1.65 5.19 -26.73 -0.14 -1.79 16 3 C -0.10 -1.56 2.14 -90.50 -0.19 -1.75 16 4 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 5 C 0.12 1.86 5.01 -3.71 -0.02 1.84 16 6 N -0.59 -8.91 2.97 -173.89 -0.52 -9.43 16 7 C 0.57 8.67 6.32 -12.33 -0.08 8.59 16 8 O -0.54 -9.34 15.09 5.32 0.08 -9.26 16 9 C -0.23 -3.08 4.90 -104.69 -0.51 -3.59 16 10 C 0.18 2.36 8.75 -16.77 -0.15 2.21 16 11 N -0.52 -6.49 10.42 -14.24 -0.15 -6.64 16 12 C 0.31 3.33 12.27 -92.03 -1.13 2.20 16 13 N -0.52 -6.16 9.99 -10.48 -0.10 -6.27 16 14 C 0.23 2.93 5.52 -81.82 -0.45 2.47 16 15 C -0.05 -0.63 2.91 -91.77 -0.27 -0.90 16 16 C -0.14 -1.37 9.06 37.16 0.34 -1.03 16 17 C -0.13 -1.39 9.15 37.16 0.34 -1.05 16 18 C 0.11 1.63 5.33 -3.71 -0.02 1.61 16 19 C -0.15 -2.35 5.78 -26.62 -0.15 -2.50 16 20 C 0.18 3.13 2.53 -67.89 -0.17 2.96 16 21 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 22 N -0.72 -15.65 3.72 -53.39 -0.20 -15.85 16 23 C -0.24 -6.02 9.93 -15.06 -0.15 -6.17 16 24 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 25 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 26 N -0.93 -26.25 13.06 55.49 0.72 -25.53 16 27 Si 0.90 21.33 29.55 -169.99 -5.02 16.31 16 28 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 29 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 30 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 31 H 0.05 0.69 6.69 -51.93 -0.35 0.34 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.08 1.37 7.69 -51.93 -0.40 0.97 16 36 H 0.08 1.38 6.64 -51.93 -0.34 1.03 16 37 H 0.09 1.38 5.75 -51.93 -0.30 1.08 16 38 H 0.18 2.06 7.43 -52.48 -0.39 1.68 16 39 H 0.20 1.41 8.06 -52.48 -0.42 0.99 16 40 H 0.10 1.30 5.78 -51.93 -0.30 1.00 16 41 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.65 7.98 -51.93 -0.41 0.24 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.09 1.60 7.74 -51.93 -0.40 1.19 16 48 H 0.07 0.90 4.74 -51.93 -0.25 0.65 16 49 H 0.08 1.28 8.14 -51.92 -0.42 0.85 16 50 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 51 H 0.38 8.98 5.94 -40.82 -0.24 8.74 16 52 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 404.30 15.07 6.09 6.09 Total: -1.00 -28.87 404.30 -10.01 -38.87 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -8.42 Total: 10.54 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -2.49 Total: 1.16 kcal Atomic # 7 Polarization: -63.47 SS G_CDS: -0.24 Total: -63.71 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.08 Total: -9.26 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -28.87 -10.01 -38.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037989684.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.683 kcal (2) G-P(sol) polarization free energy of solvation -28.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds