Wall clock time and date at job start Wed Apr 1 2020 05:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46885 * 2 1 4 4 H 1.09003 * 109.52503 * 305.07759 * 3 2 1 5 5 C 1.53188 * 109.50021 * 65.16275 * 3 2 1 6 6 N 1.46918 * 108.77679 * 174.58275 * 5 3 2 7 7 C 1.34777 * 120.63031 * 126.36710 * 6 5 3 8 8 O 1.21556 * 120.00161 * 354.38701 * 7 6 5 9 9 C 1.47836 * 120.00072 * 174.37689 * 7 6 5 10 10 C 1.39961 * 120.94090 * 305.69683 * 9 7 6 11 11 N 1.32138 * 118.92516 * 179.97438 * 10 9 7 12 12 C 1.31886 * 120.96423 * 0.02562 * 11 10 9 13 13 N 1.31858 * 122.09358 * 359.97438 * 12 11 10 14 14 C 1.32156 * 120.96972 * 359.74242 * 13 12 11 15 15 C 1.50700 * 120.53820 * 180.26924 * 14 13 12 16 16 C 1.52996 * 109.47310 * 305.17666 * 15 14 13 17 17 C 1.53000 * 109.46971 * 65.17986 * 15 14 13 18 18 C 1.46927 * 118.74146 * 306.39221 * 6 5 3 19 19 C 1.53193 * 108.77442 * 53.60799 * 18 6 5 20 20 C 1.53043 * 109.30912 * 305.36418 * 19 18 6 21 21 H 1.08997 * 109.45163 * 301.35470 * 20 19 18 22 22 N 1.46502 * 109.45539 * 181.38544 * 20 19 18 23 23 C 1.36945 * 119.99896 * 84.93672 * 22 20 19 24 24 H 1.07998 * 119.99820 * 359.97438 * 23 22 20 25 25 C 1.38809 * 119.99808 * 179.97438 * 23 22 20 26 26 N 1.31616 * 119.99894 * 179.97438 * 25 23 22 27 27 Si 1.86802 * 120.00188 * 359.97438 * 25 23 22 28 28 H 1.48505 * 109.46763 * 90.00092 * 27 25 23 29 29 H 1.48492 * 109.47066 * 330.00285 * 27 25 23 30 30 H 1.48498 * 109.47052 * 210.00060 * 27 25 23 31 31 H 1.09000 * 109.47076 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47185 * 300.00082 * 1 2 3 33 33 H 1.09003 * 109.47086 * 60.00448 * 1 2 3 34 34 H 1.09000 * 109.46870 * 239.99887 * 2 1 3 35 35 H 1.08998 * 109.47012 * 120.00027 * 2 1 3 36 36 H 1.08999 * 109.58405 * 294.37516 * 5 3 2 37 37 H 1.09005 * 109.58831 * 54.65016 * 5 3 2 38 38 H 1.07994 * 120.53946 * 0.02562 * 10 9 7 39 39 H 1.07995 * 118.95555 * 179.97438 * 12 11 10 40 40 H 1.09005 * 109.46975 * 185.17833 * 15 14 13 41 41 H 1.09005 * 109.46965 * 60.00161 * 16 15 14 42 42 H 1.08998 * 109.47217 * 179.97438 * 16 15 14 43 43 H 1.08996 * 109.47206 * 300.00025 * 16 15 14 44 44 H 1.08998 * 109.47023 * 179.97438 * 17 15 14 45 45 H 1.09005 * 109.47147 * 299.99742 * 17 15 14 46 46 H 1.08997 * 109.47319 * 59.99848 * 17 15 14 47 47 H 1.09001 * 109.58530 * 173.39663 * 18 6 5 48 48 H 1.09002 * 109.58331 * 293.67629 * 18 6 5 49 49 H 1.08994 * 109.49555 * 185.41838 * 19 18 6 50 50 H 1.08997 * 109.49760 * 65.32113 * 19 18 6 51 51 H 0.96996 * 120.00170 * 264.93496 * 22 20 19 52 52 H 0.97003 * 120.00618 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9828 -0.8408 5 6 1.6385 2.1268 1.3104 6 7 2.2451 3.4643 1.3507 7 6 1.4857 4.5565 1.5672 8 8 0.2761 4.4531 1.6297 9 6 2.1237 5.8802 1.7288 10 6 3.1267 6.0839 2.6835 11 7 3.6701 7.2833 2.7936 12 6 3.2799 8.2786 2.0212 13 7 2.3389 8.1305 1.1096 14 6 1.7456 6.9636 0.9279 15 6 0.6755 6.8038 -0.1211 16 6 -0.4231 7.8436 0.1085 17 6 1.2873 7.0060 -1.5087 18 6 3.6953 3.5888 1.1498 19 6 4.0737 2.8881 -0.1589 20 6 3.5652 1.4450 -0.1257 21 1 4.0008 0.9263 0.7283 22 7 3.9542 0.7620 -1.3620 23 6 5.1924 0.1862 -1.4658 24 1 5.8822 0.2360 -0.6363 25 6 5.5607 -0.4613 -2.6370 26 7 6.7508 -1.0143 -2.7369 27 14 4.3671 -0.5480 -4.0714 28 1 4.5668 0.6301 -4.9533 29 1 2.9742 -0.5507 -3.5568 30 1 4.6117 -1.7921 -4.8444 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 0.5533 2.2160 1.3585 37 1 1.9942 1.5364 2.1549 38 1 3.4518 5.2737 3.3192 39 1 3.7459 9.2457 2.1392 40 1 0.2482 5.8031 -0.0546 41 1 0.0042 8.8442 0.0421 42 1 -1.1969 7.7283 -0.6504 43 1 -0.8589 7.6995 1.0971 44 1 0.5134 6.8900 -2.2674 45 1 1.7145 8.0067 -1.5752 46 1 2.0699 6.2652 -1.6723 47 1 3.9670 4.6428 1.0919 48 1 4.2209 3.1211 1.9824 49 1 5.1577 2.8893 -0.2719 50 1 3.6193 3.4148 -0.9981 51 1 3.3347 0.7176 -2.1071 52 1 7.0082 -1.4672 -3.5552 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037989687.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:55 Heat of formation + Delta-G solvation = 13.221291 kcal Electronic energy + Delta-G solvation = -32109.818360 eV Core-core repulsion = 28109.263560 eV Total energy + Delta-G solvation = -4000.554800 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.74524 -40.01191 -38.04387 -36.34746 -35.01043 -34.02774 -33.30572 -32.04303 -31.78508 -30.00969 -28.98695 -27.35127 -26.12812 -25.25777 -24.53409 -24.00681 -22.54671 -21.11425 -20.94322 -20.37721 -19.55729 -18.25007 -17.74849 -17.28823 -16.96830 -16.36629 -15.34326 -15.15273 -15.05828 -14.68517 -14.42655 -14.31865 -14.25323 -13.84401 -13.83896 -13.51176 -13.45307 -13.35212 -12.97554 -12.80831 -12.48540 -12.37875 -12.10294 -12.04201 -11.81660 -11.79151 -11.54550 -11.50023 -11.15532 -11.10289 -11.07366 -10.88454 -10.78834 -10.49220 -10.40066 -10.26941 -10.04993 -9.85470 -9.72742 -9.63939 -9.56603 -8.99598 -8.70748 -7.34381 -5.83773 -3.19732 0.28347 0.69654 2.37508 2.79580 3.31776 3.35031 3.39307 3.40943 3.64682 3.78207 3.97281 4.17072 4.52741 4.56265 4.78489 4.83442 4.87595 4.90651 4.94704 5.05153 5.11503 5.13095 5.25264 5.37831 5.39347 5.44828 5.46746 5.49290 5.51800 5.64112 5.66662 5.69240 5.78049 5.82220 5.91436 5.93847 5.95256 5.99608 6.02441 6.11695 6.15196 6.18275 6.26597 6.33945 6.45602 6.56910 6.63425 6.70835 6.85098 7.21635 7.69566 7.90000 7.91330 8.35162 9.13122 9.85868 10.05325 11.34402 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012152 B = 0.003278 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.641113 B = 8540.614394 C = 8942.523101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.108 4.108 4 H 0.070 0.930 5 C 0.119 3.881 6 N -0.596 5.596 7 C 0.571 3.429 8 O -0.531 6.531 9 C -0.229 4.229 10 C 0.184 3.816 11 N -0.523 5.523 12 C 0.309 3.691 13 N -0.514 5.514 14 C 0.232 3.768 15 C -0.060 4.060 16 C -0.134 4.134 17 C -0.141 4.141 18 C 0.104 3.896 19 C -0.150 4.150 20 C 0.189 3.811 21 H 0.058 0.942 22 N -0.744 5.744 23 C -0.244 4.244 24 H 0.090 0.910 25 C 0.008 3.992 26 N -0.932 5.932 27 Si 0.881 3.119 28 H -0.285 1.285 29 H -0.276 1.276 30 H -0.291 1.291 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.173 0.827 39 H 0.201 0.799 40 H 0.103 0.897 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.054 0.946 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.055 0.945 47 H 0.072 0.928 48 H 0.075 0.925 49 H 0.083 0.917 50 H 0.058 0.942 51 H 0.361 0.639 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.840 15.551 9.645 21.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.128 4.128 4 H 0.088 0.912 5 C -0.003 4.003 6 N -0.328 5.328 7 C 0.357 3.643 8 O -0.409 6.409 9 C -0.237 4.237 10 C 0.017 3.983 11 N -0.236 5.236 12 C 0.022 3.978 13 N -0.227 5.227 14 C 0.085 3.915 15 C -0.079 4.079 16 C -0.192 4.192 17 C -0.199 4.199 18 C -0.019 4.019 19 C -0.191 4.191 20 C 0.079 3.921 21 H 0.076 0.924 22 N -0.386 5.386 23 C -0.374 4.374 24 H 0.108 0.892 25 C -0.188 4.188 26 N -0.580 5.580 27 Si 0.711 3.289 28 H -0.212 1.212 29 H -0.203 1.203 30 H -0.217 1.217 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.112 0.888 37 H 0.090 0.910 38 H 0.190 0.810 39 H 0.217 0.783 40 H 0.121 0.879 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.074 0.926 47 H 0.090 0.910 48 H 0.093 0.907 49 H 0.101 0.899 50 H 0.077 0.923 51 H 0.194 0.806 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.786 16.276 9.825 22.369 hybrid contribution -0.786 -0.878 -1.189 1.674 sum -12.572 15.398 8.636 21.673 Atomic orbital electron populations 1.21854 0.96575 1.01240 1.01439 1.21467 0.94583 0.95550 1.03541 1.21833 0.97641 0.96399 0.96959 0.91168 1.21810 0.99644 0.80836 0.97984 1.48123 1.08750 1.06568 1.69326 1.17816 0.86463 0.83121 0.76935 1.90780 1.13274 1.85659 1.51163 1.21614 1.02220 0.97067 1.02785 1.23455 0.87571 0.94839 0.92403 1.68467 1.28372 1.00611 1.26179 1.25189 0.88911 0.98224 0.85465 1.68270 1.09791 1.24483 1.20202 1.21802 0.91560 0.86618 0.91539 1.20423 0.92611 1.02733 0.92151 1.21703 0.97095 0.98484 1.01911 1.21798 1.01103 1.02603 0.94377 1.21986 0.79077 1.01098 0.99762 1.22646 1.02790 0.98828 0.94886 1.20155 0.90652 0.90511 0.90787 0.92394 1.42764 1.16485 1.66260 1.13075 1.19039 0.90380 1.27488 1.00499 0.89187 1.24648 0.96370 1.00167 0.97656 1.69691 1.19281 1.41451 1.27565 0.86611 0.81158 0.77376 0.83719 1.21175 1.20252 1.21747 0.93005 0.92932 0.93066 0.90352 0.91868 0.88768 0.90971 0.80973 0.78294 0.87906 0.91572 0.91764 0.92675 0.91467 0.91578 0.92603 0.90984 0.90700 0.89887 0.92286 0.80585 0.93018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.67 37.16 0.36 -1.49 16 2 C -0.11 -1.61 5.31 -26.73 -0.14 -1.75 16 3 C -0.11 -1.55 1.92 -90.50 -0.17 -1.72 16 4 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 5 C 0.12 1.48 5.34 -3.72 -0.02 1.47 16 6 N -0.60 -7.33 2.97 -173.89 -0.52 -7.85 16 7 C 0.57 7.48 6.40 -12.33 -0.08 7.40 16 8 O -0.53 -8.23 14.88 5.32 0.08 -8.15 16 9 C -0.23 -2.71 4.60 -104.69 -0.48 -3.19 16 10 C 0.18 1.91 9.13 -16.78 -0.15 1.76 16 11 N -0.52 -5.51 10.42 -14.24 -0.15 -5.66 16 12 C 0.31 2.98 12.27 -92.02 -1.13 1.85 16 13 N -0.51 -5.67 9.99 -10.48 -0.10 -5.77 16 14 C 0.23 2.73 5.52 -81.82 -0.45 2.28 16 15 C -0.06 -0.67 3.00 -91.77 -0.28 -0.94 16 16 C -0.13 -1.30 9.06 37.16 0.34 -0.96 16 17 C -0.14 -1.43 9.15 37.16 0.34 -1.09 16 18 C 0.10 1.22 5.66 -3.71 -0.02 1.20 16 19 C -0.15 -2.28 5.66 -26.61 -0.15 -2.43 16 20 C 0.19 3.19 2.19 -67.89 -0.15 3.04 16 21 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 22 N -0.74 -16.06 4.13 -53.38 -0.22 -16.28 16 23 C -0.24 -6.42 10.41 -15.06 -0.16 -6.58 16 24 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 25 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 26 N -0.93 -28.32 13.97 55.49 0.78 -27.55 16 27 Si 0.88 21.37 27.74 -169.99 -4.71 16.65 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 29 H -0.28 -6.27 6.52 56.52 0.37 -5.90 16 30 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.58 6.70 -51.93 -0.35 0.23 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 1.33 7.22 -51.93 -0.37 0.95 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.09 1.21 5.72 -51.93 -0.30 0.91 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.17 1.41 7.84 -52.49 -0.41 1.00 16 39 H 0.20 1.21 8.06 -52.49 -0.42 0.78 16 40 H 0.10 1.31 5.55 -51.93 -0.29 1.03 16 41 H 0.07 0.62 7.98 -51.93 -0.41 0.21 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.07 0.80 5.40 -51.93 -0.28 0.52 16 48 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 50 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 51 H 0.36 7.86 5.37 -40.82 -0.22 7.64 16 52 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 405.76 15.07 6.11 6.11 Total: -1.00 -31.30 405.76 -9.74 -41.05 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -8.56 Total: 8.51 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -2.44 Total: -1.06 kcal Atomic # 7 Polarization: -62.89 SS G_CDS: -0.22 Total: -63.11 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: 0.08 Total: -8.15 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.71 Total: 16.65 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.30 -9.74 -41.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037989687.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.266 kcal (2) G-P(sol) polarization free energy of solvation -31.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds