Wall clock time and date at job start Wed Apr 1 2020 05:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46885 * 2 1 4 4 H 1.09003 * 109.52503 * 305.07759 * 3 2 1 5 5 C 1.53188 * 109.50021 * 65.16275 * 3 2 1 6 6 N 1.46918 * 108.77679 * 174.58275 * 5 3 2 7 7 C 1.34777 * 120.63031 * 126.36710 * 6 5 3 8 8 O 1.21556 * 120.00161 * 354.38701 * 7 6 5 9 9 C 1.47836 * 120.00072 * 174.37689 * 7 6 5 10 10 C 1.39961 * 120.94090 * 305.69683 * 9 7 6 11 11 N 1.32138 * 118.92516 * 179.97438 * 10 9 7 12 12 C 1.31886 * 120.96423 * 0.02562 * 11 10 9 13 13 N 1.31858 * 122.09358 * 359.97438 * 12 11 10 14 14 C 1.32156 * 120.96972 * 359.74242 * 13 12 11 15 15 C 1.50700 * 120.53820 * 180.26924 * 14 13 12 16 16 C 1.52996 * 109.47310 * 305.17666 * 15 14 13 17 17 C 1.53000 * 109.46971 * 65.17986 * 15 14 13 18 18 C 1.46927 * 118.74146 * 306.39221 * 6 5 3 19 19 C 1.53193 * 108.77442 * 53.60799 * 18 6 5 20 20 C 1.53043 * 109.30912 * 305.36418 * 19 18 6 21 21 H 1.08997 * 109.45163 * 301.35470 * 20 19 18 22 22 N 1.46502 * 109.45539 * 181.38544 * 20 19 18 23 23 C 1.36945 * 119.99896 * 84.93672 * 22 20 19 24 24 H 1.07998 * 119.99820 * 359.97438 * 23 22 20 25 25 C 1.38809 * 119.99808 * 179.97438 * 23 22 20 26 26 N 1.31616 * 119.99894 * 179.97438 * 25 23 22 27 27 Si 1.86802 * 120.00188 * 359.97438 * 25 23 22 28 28 H 1.48505 * 109.46763 * 90.00092 * 27 25 23 29 29 H 1.48492 * 109.47066 * 330.00285 * 27 25 23 30 30 H 1.48498 * 109.47052 * 210.00060 * 27 25 23 31 31 H 1.09000 * 109.47076 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47185 * 300.00082 * 1 2 3 33 33 H 1.09003 * 109.47086 * 60.00448 * 1 2 3 34 34 H 1.09000 * 109.46870 * 239.99887 * 2 1 3 35 35 H 1.08998 * 109.47012 * 120.00027 * 2 1 3 36 36 H 1.08999 * 109.58405 * 294.37516 * 5 3 2 37 37 H 1.09005 * 109.58831 * 54.65016 * 5 3 2 38 38 H 1.07994 * 120.53946 * 0.02562 * 10 9 7 39 39 H 1.07995 * 118.95555 * 179.97438 * 12 11 10 40 40 H 1.09005 * 109.46975 * 185.17833 * 15 14 13 41 41 H 1.09005 * 109.46965 * 60.00161 * 16 15 14 42 42 H 1.08998 * 109.47217 * 179.97438 * 16 15 14 43 43 H 1.08996 * 109.47206 * 300.00025 * 16 15 14 44 44 H 1.08998 * 109.47023 * 179.97438 * 17 15 14 45 45 H 1.09005 * 109.47147 * 299.99742 * 17 15 14 46 46 H 1.08997 * 109.47319 * 59.99848 * 17 15 14 47 47 H 1.09001 * 109.58530 * 173.39663 * 18 6 5 48 48 H 1.09002 * 109.58331 * 293.67629 * 18 6 5 49 49 H 1.08994 * 109.49555 * 185.41838 * 19 18 6 50 50 H 1.08997 * 109.49760 * 65.32113 * 19 18 6 51 51 H 0.96996 * 120.00170 * 264.93496 * 22 20 19 52 52 H 0.97003 * 120.00618 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9828 -0.8408 5 6 1.6385 2.1268 1.3104 6 7 2.2451 3.4643 1.3507 7 6 1.4857 4.5565 1.5672 8 8 0.2761 4.4531 1.6297 9 6 2.1237 5.8802 1.7288 10 6 3.1267 6.0839 2.6835 11 7 3.6701 7.2833 2.7936 12 6 3.2799 8.2786 2.0212 13 7 2.3389 8.1305 1.1096 14 6 1.7456 6.9636 0.9279 15 6 0.6755 6.8038 -0.1211 16 6 -0.4231 7.8436 0.1085 17 6 1.2873 7.0060 -1.5087 18 6 3.6953 3.5888 1.1498 19 6 4.0737 2.8881 -0.1589 20 6 3.5652 1.4450 -0.1257 21 1 4.0008 0.9263 0.7283 22 7 3.9542 0.7620 -1.3620 23 6 5.1924 0.1862 -1.4658 24 1 5.8822 0.2360 -0.6363 25 6 5.5607 -0.4613 -2.6370 26 7 6.7508 -1.0143 -2.7369 27 14 4.3671 -0.5480 -4.0714 28 1 4.5668 0.6301 -4.9533 29 1 2.9742 -0.5507 -3.5568 30 1 4.6117 -1.7921 -4.8444 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 0.5533 2.2160 1.3585 37 1 1.9942 1.5364 2.1549 38 1 3.4518 5.2737 3.3192 39 1 3.7459 9.2457 2.1392 40 1 0.2482 5.8031 -0.0546 41 1 0.0042 8.8442 0.0421 42 1 -1.1969 7.7283 -0.6504 43 1 -0.8589 7.6995 1.0971 44 1 0.5134 6.8900 -2.2674 45 1 1.7145 8.0067 -1.5752 46 1 2.0699 6.2652 -1.6723 47 1 3.9670 4.6428 1.0919 48 1 4.2209 3.1211 1.9824 49 1 5.1577 2.8893 -0.2719 50 1 3.6193 3.4148 -0.9981 51 1 3.3347 0.7176 -2.1071 52 1 7.0082 -1.4672 -3.5552 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037989687.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:54 Heat of formation + Delta-G solvation = -4.551432 kcal Electronic energy + Delta-G solvation = -32110.589043 eV Core-core repulsion = 28109.263560 eV Total energy + Delta-G solvation = -4001.325483 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.60235 -41.05136 -39.24264 -37.20001 -36.31809 -35.44347 -34.14025 -33.63941 -32.82138 -31.54332 -30.10613 -28.13652 -27.27685 -26.09970 -25.78072 -25.07681 -24.08765 -22.25470 -21.93066 -21.52218 -20.76959 -19.51850 -19.08951 -18.37560 -17.76476 -17.42194 -16.80838 -16.27373 -16.05123 -15.91575 -15.68564 -15.38167 -15.24957 -15.09484 -14.75396 -14.60702 -14.57887 -14.56246 -14.14974 -14.03791 -13.97311 -13.38578 -13.19757 -13.12253 -12.92774 -12.77241 -12.74214 -12.57348 -12.56326 -12.36051 -12.22317 -12.05269 -11.96826 -11.84936 -11.63940 -11.61459 -11.54421 -11.15519 -11.04913 -10.91638 -10.60797 -10.37693 -9.78351 -9.27312 -8.00023 -5.31818 -0.53410 -0.12113 1.37604 1.37814 1.38771 1.46317 1.80872 2.48969 2.58814 2.86058 3.05041 3.17982 3.24282 3.32181 3.52810 3.69477 3.74302 3.89929 3.95998 4.01166 4.08459 4.11265 4.15804 4.25956 4.38497 4.40007 4.43517 4.57110 4.59139 4.65563 4.72249 4.73470 4.78164 4.82548 4.83736 4.87374 4.98164 5.00063 5.01757 5.12947 5.16461 5.23206 5.26658 5.30801 5.32694 5.42575 5.46979 5.60465 5.75533 5.80698 6.19900 6.24225 6.88874 6.91051 7.10446 7.87357 8.05035 9.21521 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012152 B = 0.003278 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.641113 B = 8540.614394 C = 8942.523101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.112 4.112 3 C -0.097 4.097 4 H 0.061 0.939 5 C 0.125 3.875 6 N -0.594 5.594 7 C 0.576 3.424 8 O -0.557 6.557 9 C -0.246 4.246 10 C 0.189 3.811 11 N -0.532 5.532 12 C 0.311 3.689 13 N -0.523 5.523 14 C 0.223 3.777 15 C -0.061 4.061 16 C -0.128 4.128 17 C -0.135 4.135 18 C 0.115 3.885 19 C -0.143 4.143 20 C 0.183 3.817 21 H 0.054 0.946 22 N -0.747 5.747 23 C -0.217 4.217 24 H 0.063 0.937 25 C -0.060 4.060 26 N -0.984 5.984 27 Si 0.943 3.057 28 H -0.284 1.284 29 H -0.252 1.252 30 H -0.300 1.300 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.048 0.952 34 H 0.049 0.951 35 H 0.068 0.932 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.194 0.806 39 H 0.233 0.767 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.045 0.955 44 H 0.078 0.922 45 H 0.068 0.932 46 H 0.042 0.958 47 H 0.084 0.916 48 H 0.097 0.903 49 H 0.064 0.936 50 H 0.050 0.950 51 H 0.362 0.638 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.437 17.158 10.676 24.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.150 4.150 3 C -0.117 4.117 4 H 0.080 0.920 5 C 0.002 3.998 6 N -0.324 5.324 7 C 0.363 3.637 8 O -0.436 6.436 9 C -0.254 4.254 10 C 0.022 3.978 11 N -0.245 5.245 12 C 0.024 3.976 13 N -0.237 5.237 14 C 0.076 3.924 15 C -0.081 4.081 16 C -0.186 4.186 17 C -0.193 4.193 18 C -0.008 4.008 19 C -0.183 4.183 20 C 0.075 3.925 21 H 0.072 0.928 22 N -0.389 5.389 23 C -0.348 4.348 24 H 0.081 0.919 25 C -0.252 4.252 26 N -0.635 5.635 27 Si 0.772 3.228 28 H -0.211 1.211 29 H -0.177 1.177 30 H -0.227 1.227 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.114 0.886 37 H 0.109 0.891 38 H 0.211 0.789 39 H 0.249 0.751 40 H 0.103 0.897 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.064 0.936 44 H 0.097 0.903 45 H 0.088 0.912 46 H 0.061 0.939 47 H 0.102 0.898 48 H 0.115 0.885 49 H 0.083 0.917 50 H 0.068 0.932 51 H 0.195 0.805 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.425 17.925 10.894 24.904 hybrid contribution -0.258 -1.301 -1.402 1.930 sum -13.683 16.624 9.491 23.530 Atomic orbital electron populations 1.21796 0.94655 1.02028 1.01990 1.21419 0.96253 0.94955 1.02352 1.21692 0.95181 0.96857 0.97941 0.92022 1.21771 0.99818 0.80918 0.97247 1.48104 1.08793 1.06471 1.69080 1.17944 0.86063 0.83513 0.76179 1.90765 1.14432 1.86046 1.52369 1.21550 1.03382 0.96409 1.04038 1.23797 0.86687 0.95445 0.91828 1.68570 1.28599 1.00825 1.26509 1.25905 0.88055 0.99265 0.84327 1.68334 1.10374 1.24054 1.20898 1.21952 0.91721 0.87011 0.91704 1.20407 0.92967 1.02117 0.92563 1.21658 0.96950 0.98168 1.01801 1.21751 1.01009 1.02276 0.94252 1.21913 0.78957 1.01572 0.98377 1.22445 1.01383 0.97731 0.96773 1.20396 0.92708 0.90856 0.88521 0.92827 1.42784 1.14830 1.66455 1.14801 1.19008 0.91279 1.25514 0.99045 0.91925 1.25349 0.98057 1.01121 1.00642 1.69859 1.21652 1.43749 1.28241 0.85580 0.80270 0.76672 0.80281 1.21110 1.17709 1.22689 0.92147 0.91563 0.93315 0.93240 0.91337 0.88624 0.89147 0.78916 0.75066 0.89706 0.91201 0.90498 0.93580 0.90318 0.91248 0.93915 0.89801 0.88524 0.91739 0.93150 0.80501 0.93572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 9.67 71.98 0.70 -2.55 16 2 C -0.11 -3.01 5.31 30.60 0.16 -2.85 16 3 C -0.10 -2.63 1.92 -10.72 -0.02 -2.65 16 4 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 5 C 0.12 2.82 5.34 86.36 0.46 3.28 16 6 N -0.59 -13.39 2.97 -822.33 -2.44 -15.83 16 7 C 0.58 14.15 6.40 86.78 0.56 14.71 16 8 O -0.56 -16.58 14.88 -3.89 -0.06 -16.63 16 9 C -0.25 -5.40 4.60 -19.91 -0.09 -5.49 16 10 C 0.19 3.47 9.13 85.06 0.78 4.25 16 11 N -0.53 -9.87 10.42 -198.98 -2.07 -11.94 16 12 C 0.31 5.21 12.27 180.84 2.22 7.43 16 13 N -0.52 -10.54 9.99 -187.06 -1.87 -12.41 16 14 C 0.22 4.94 5.52 42.92 0.24 5.18 16 15 C -0.06 -1.30 3.00 -11.54 -0.03 -1.34 16 16 C -0.13 -2.32 9.06 71.98 0.65 -1.67 16 17 C -0.14 -2.60 9.15 71.98 0.66 -1.94 16 18 C 0.11 2.46 5.66 86.36 0.49 2.95 16 19 C -0.14 -4.21 5.66 30.67 0.17 -4.04 16 20 C 0.18 6.06 2.19 45.02 0.10 6.16 16 21 H 0.05 1.84 8.08 -2.39 -0.02 1.82 16 22 N -0.75 -32.07 4.13 -322.80 -1.33 -33.40 16 23 C -0.22 -11.61 10.41 84.03 0.87 -10.74 16 24 H 0.06 3.65 8.06 -2.91 -0.02 3.62 16 25 C -0.06 -3.44 5.50 84.86 0.47 -2.97 16 26 N -0.98 -61.60 13.97 21.65 0.30 -61.29 16 27 Si 0.94 44.62 27.74 68.60 1.90 46.52 16 28 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 29 H -0.25 -10.77 6.52 99.48 0.65 -10.12 16 30 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.07 1.28 6.70 -2.39 -0.02 1.27 16 33 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.05 1.63 7.22 -2.39 -0.02 1.61 16 35 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.10 2.23 5.72 -2.39 -0.01 2.22 16 37 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 38 H 0.19 2.57 7.84 -2.91 -0.02 2.55 16 39 H 0.23 2.07 8.06 -2.91 -0.02 2.04 16 40 H 0.08 2.12 5.55 -2.38 -0.01 2.11 16 41 H 0.07 1.20 7.98 -2.38 -0.02 1.18 16 42 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 46 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.08 1.67 5.40 -2.39 -0.01 1.66 16 48 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 49 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 50 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 51 H 0.36 15.47 5.37 -92.71 -0.50 14.97 16 52 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -68.92 405.76 3.16 -65.76 By element: Atomic # 1 Polarization: 31.13 SS G_CDS: 0.36 Total: 31.49 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: 8.37 Total: 7.74 kcal Atomic # 7 Polarization: -127.46 SS G_CDS: -7.42 Total: -134.88 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -0.06 Total: -16.63 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.90 Total: 46.52 kcal Total: -68.92 3.16 -65.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037989687.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.206 kcal (2) G-P(sol) polarization free energy of solvation -68.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds