Wall clock time and date at job start Wed Apr 1 2020 05:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47549 * 2 1 4 4 H 1.09000 * 109.51876 * 304.92029 * 3 2 1 5 5 C 1.53188 * 109.49737 * 64.99383 * 3 2 1 6 6 N 1.46929 * 108.89520 * 174.66036 * 5 3 2 7 7 C 1.34772 * 120.63233 * 126.30179 * 6 5 3 8 8 O 1.21560 * 119.99789 * 352.18808 * 7 6 5 9 9 C 1.47840 * 120.00127 * 172.19446 * 7 6 5 10 10 C 1.39530 * 119.63509 * 161.12810 * 9 7 6 11 11 C 1.38229 * 119.15315 * 179.97438 * 10 9 7 12 12 C 1.39447 * 118.42825 * 359.97438 * 11 10 9 13 13 N 1.39072 * 120.39683 * 179.97438 * 12 11 10 14 14 C 1.46499 * 120.00498 * 357.48702 * 13 12 11 15 15 C 1.46501 * 119.99707 * 177.48868 * 13 12 11 16 16 C 1.39463 * 119.20059 * 0.02562 * 12 11 10 17 17 N 1.31316 * 120.77440 * 359.71992 * 16 12 11 18 18 C 1.46926 * 118.73464 * 306.32402 * 6 5 3 19 19 C 1.53191 * 108.77734 * 53.60647 * 18 6 5 20 20 C 1.53038 * 109.31430 * 305.36377 * 19 18 6 21 21 H 1.08999 * 109.46258 * 181.37475 * 20 19 18 22 22 N 1.46498 * 109.45658 * 301.34339 * 20 19 18 23 23 C 1.36933 * 120.00000 * 274.99658 * 22 20 19 24 24 H 1.07999 * 120.00408 * 0.02562 * 23 22 20 25 25 C 1.38814 * 120.00072 * 180.02562 * 23 22 20 26 26 N 1.31625 * 120.00016 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 120.00141 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.47267 * 89.99856 * 27 25 23 29 29 H 1.48499 * 109.47053 * 209.99768 * 27 25 23 30 30 H 1.48495 * 109.47149 * 329.99580 * 27 25 23 31 31 H 1.08998 * 109.47257 * 300.00568 * 1 2 3 32 32 H 1.09000 * 109.46849 * 60.00184 * 1 2 3 33 33 H 1.09001 * 109.47599 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47257 * 239.99432 * 2 1 3 35 35 H 1.09002 * 109.46865 * 120.00363 * 2 1 3 36 36 H 1.09001 * 109.58313 * 54.80384 * 5 3 2 37 37 H 1.08995 * 109.59286 * 294.52209 * 5 3 2 38 38 H 1.07998 * 120.42527 * 359.97438 * 10 9 7 39 39 H 1.08002 * 120.78329 * 179.97438 * 11 10 9 40 40 H 1.08998 * 109.46717 * 89.99519 * 14 13 12 41 41 H 1.08990 * 109.47591 * 210.00347 * 14 13 12 42 42 H 1.09004 * 109.46840 * 330.00768 * 14 13 12 43 43 H 1.08997 * 109.47404 * 354.54732 * 15 13 12 44 44 H 1.09000 * 109.47468 * 114.54665 * 15 13 12 45 45 H 1.09006 * 109.47221 * 234.54655 * 15 13 12 46 46 H 1.08006 * 119.61165 * 179.97438 * 16 12 11 47 47 H 1.09002 * 109.58692 * 173.39440 * 18 6 5 48 48 H 1.08998 * 109.59262 * 293.81604 * 18 6 5 49 49 H 1.09003 * 109.49274 * 65.31466 * 19 18 6 50 50 H 1.08997 * 109.49859 * 185.37838 * 19 18 6 51 51 H 0.97001 * 119.99889 * 95.00114 * 22 20 19 52 52 H 0.97001 * 120.00273 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6071 1.9818 -0.8424 5 6 1.6351 2.1280 1.3087 6 7 2.2389 3.4668 1.3512 7 6 1.4765 4.5575 1.5645 8 8 0.2651 4.4582 1.5824 9 6 2.1135 5.8746 1.7767 10 6 1.3644 7.0391 1.6041 11 6 1.9698 8.2653 1.8056 12 6 3.3139 8.2891 2.1762 13 7 3.9639 9.5001 2.3890 14 6 3.2521 10.7618 2.1706 15 6 5.3604 9.5140 2.8314 16 6 3.9988 7.0840 2.3299 17 7 3.3911 5.9363 2.1353 18 6 3.6896 3.5939 1.1562 19 6 4.0747 2.8937 -0.1508 20 6 3.5689 1.4497 -0.1196 21 1 3.8628 0.9420 -1.0383 22 7 4.1511 0.7535 1.0304 23 6 5.3898 0.1789 0.9277 24 1 5.9378 0.2393 -0.0010 25 6 5.9412 -0.4812 2.0172 26 7 5.2736 -0.5544 3.1492 27 14 7.6313 -1.2644 1.8773 28 1 8.6688 -0.2758 2.2665 29 1 7.7071 -2.4423 2.7784 30 1 7.8615 -1.6978 0.4758 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 1.9907 1.5397 2.1546 37 1 0.5496 2.2151 1.3549 38 1 0.3248 6.9831 1.3169 39 1 1.4149 9.1832 1.6790 40 1 2.7652 11.0691 3.0961 41 1 3.9606 11.5297 1.8604 42 1 2.5007 10.6251 1.3929 43 1 5.6882 8.4940 3.0319 44 1 5.9845 9.9493 2.0510 45 1 5.4476 10.1090 3.7406 46 1 5.0401 7.0947 2.6164 47 1 3.9596 4.6484 1.0992 48 1 4.2129 3.1252 1.9896 49 1 3.6226 3.4195 -0.9919 50 1 5.1592 2.8976 -0.2598 51 1 3.6590 0.6995 1.8646 52 1 5.6588 -1.0160 3.9105 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037990410.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:54:45 Heat of formation + Delta-G solvation = 40.083226 kcal Electronic energy + Delta-G solvation = -31537.848380 eV Core-core repulsion = 27538.458401 eV Total energy + Delta-G solvation = -3999.389979 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.83086 -39.47753 -37.72291 -36.87632 -34.28988 -33.63961 -32.45066 -31.56063 -30.79194 -29.24051 -28.83243 -28.36096 -26.19939 -24.60126 -23.71368 -23.50624 -23.16360 -21.99537 -20.63949 -20.00941 -18.43961 -17.59432 -17.31089 -17.11292 -16.47498 -15.76750 -15.59269 -15.10400 -14.89873 -14.62965 -14.48925 -14.39764 -13.93566 -13.69183 -13.55665 -13.43719 -13.20657 -13.12886 -13.00927 -12.83375 -12.60208 -12.44554 -12.37980 -12.12393 -12.00139 -11.53029 -11.28481 -10.96440 -10.92384 -10.76629 -10.65112 -10.42588 -10.21442 -10.15603 -10.09513 -9.90513 -9.68363 -9.66012 -9.44214 -9.04224 -8.71866 -8.04912 -7.66935 -6.86571 -5.70319 -2.97802 0.86620 1.18053 2.63867 2.97674 3.42849 3.46514 3.52141 3.53473 3.91355 4.27205 4.48230 4.56738 4.64664 4.69235 4.82288 4.89742 4.96948 5.11250 5.15238 5.23602 5.28223 5.32018 5.40890 5.49049 5.57500 5.66719 5.72403 5.76878 5.82781 5.84494 5.93517 6.00218 6.01467 6.07842 6.23984 6.26387 6.30982 6.43797 6.49945 6.56864 6.65182 6.69044 6.72610 6.79955 6.90235 6.94725 6.98435 7.10463 7.20915 7.76303 7.78863 7.95608 8.48317 8.54882 9.59698 10.18162 10.53474 11.52256 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010506 B = 0.003235 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.490272 B = 8653.036204 C =10761.748202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.102 4.102 4 H 0.065 0.935 5 C 0.117 3.883 6 N -0.581 5.581 7 C 0.572 3.428 8 O -0.557 6.557 9 C 0.018 3.982 10 C -0.059 4.059 11 C -0.172 4.172 12 C 0.184 3.816 13 N -0.626 5.626 14 C 0.090 3.910 15 C 0.084 3.916 16 C 0.020 3.980 17 N -0.397 5.397 18 C 0.104 3.896 19 C -0.152 4.152 20 C 0.178 3.822 21 H 0.047 0.953 22 N -0.718 5.718 23 C -0.233 4.233 24 H 0.068 0.932 25 C -0.013 4.013 26 N -0.932 5.932 27 Si 0.903 3.097 28 H -0.292 1.292 29 H -0.293 1.293 30 H -0.284 1.284 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.144 0.856 39 H 0.137 0.863 40 H 0.052 0.948 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.058 0.942 45 H 0.061 0.939 46 H 0.161 0.839 47 H 0.109 0.891 48 H 0.081 0.919 49 H 0.043 0.957 50 H 0.071 0.929 51 H 0.384 0.616 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.035 21.804 -3.568 22.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.122 4.122 4 H 0.083 0.917 5 C -0.005 4.005 6 N -0.311 5.311 7 C 0.359 3.641 8 O -0.437 6.437 9 C -0.120 4.120 10 C -0.080 4.080 11 C -0.202 4.202 12 C 0.078 3.922 13 N -0.336 5.336 14 C -0.054 4.054 15 C -0.058 4.058 16 C -0.145 4.145 17 N -0.108 5.108 18 C -0.018 4.018 19 C -0.193 4.193 20 C 0.068 3.932 21 H 0.065 0.935 22 N -0.360 5.360 23 C -0.364 4.364 24 H 0.086 0.914 25 C -0.209 4.209 26 N -0.581 5.581 27 Si 0.735 3.265 28 H -0.219 1.219 29 H -0.220 1.220 30 H -0.209 1.209 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.162 0.838 39 H 0.155 0.845 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.101 0.899 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.178 0.822 47 H 0.126 0.874 48 H 0.099 0.901 49 H 0.061 0.939 50 H 0.090 0.910 51 H 0.219 0.781 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.967 21.023 -3.462 21.877 hybrid contribution 0.627 0.415 0.187 0.775 sum -4.340 21.438 -3.275 22.117 Atomic orbital electron populations 1.21851 0.96862 1.00920 1.01375 1.21407 0.94223 0.95842 1.03291 1.21782 0.97416 0.95974 0.97022 0.91675 1.21717 0.98715 0.81704 0.98348 1.47943 1.09352 1.05826 1.67931 1.17771 0.85993 0.83158 0.77140 1.90724 1.13435 1.85566 1.53930 1.20870 0.90611 0.94147 1.06415 1.21816 1.00911 0.90942 0.94335 1.21026 0.93248 0.98680 1.07267 1.19105 0.92437 0.87261 0.93402 1.46229 1.12287 1.02980 1.72067 1.21694 0.97462 0.84966 1.01228 1.21814 0.80828 1.03681 0.99499 1.22602 1.00806 0.85872 1.05264 1.67713 1.09037 1.27248 1.06769 1.22362 0.78085 1.02835 0.98492 1.22573 1.01444 0.99016 0.96276 1.20284 0.89697 0.90861 0.92357 0.93455 1.42459 1.18879 1.63996 1.10663 1.19211 0.93537 1.26630 0.97018 0.91371 1.24686 0.98432 1.01698 0.96077 1.69655 1.37943 1.48240 1.02255 0.86251 0.84647 0.78710 0.76937 1.21918 1.21994 1.20944 0.92763 0.93403 0.93245 0.92115 0.90511 0.90708 0.89714 0.83805 0.84485 0.92970 0.91154 0.91119 0.89904 0.92378 0.92076 0.82209 0.87381 0.90107 0.93870 0.91048 0.78091 0.93643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.67 37.16 0.36 -1.84 16 2 C -0.11 -1.85 5.21 -26.73 -0.14 -1.99 16 3 C -0.10 -1.79 2.15 -90.35 -0.19 -1.98 16 4 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 5 C 0.12 2.16 5.03 -3.71 -0.02 2.14 16 6 N -0.58 -10.70 2.97 -173.88 -0.52 -11.22 16 7 C 0.57 10.47 7.59 -12.33 -0.09 10.37 16 8 O -0.56 -11.16 15.90 5.31 0.08 -11.08 16 9 C 0.02 0.29 6.38 -83.02 -0.53 -0.24 16 10 C -0.06 -0.75 9.61 -39.10 -0.38 -1.13 16 11 C -0.17 -1.76 9.26 -39.13 -0.36 -2.12 16 12 C 0.18 1.89 6.56 -83.67 -0.55 1.34 16 13 N -0.63 -4.75 3.39 -187.40 -0.64 -5.39 16 14 C 0.09 0.45 10.19 59.85 0.61 1.06 16 15 C 0.08 0.47 10.61 59.85 0.63 1.11 16 16 C 0.02 0.24 10.46 -17.32 -0.18 0.06 16 17 N -0.40 -5.97 6.51 -9.63 -0.06 -6.04 16 18 C 0.10 1.92 5.52 -3.71 -0.02 1.90 16 19 C -0.15 -2.78 5.78 -26.61 -0.15 -2.94 16 20 C 0.18 3.53 2.54 -67.73 -0.17 3.36 16 21 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 22 N -0.72 -17.18 3.73 -53.23 -0.20 -17.37 16 23 C -0.23 -6.24 9.93 -15.06 -0.15 -6.39 16 24 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 25 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 26 N -0.93 -27.70 13.06 55.49 0.72 -26.97 16 27 Si 0.90 22.22 29.55 -169.99 -5.02 17.20 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 29 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 30 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 31 H 0.05 0.79 6.69 -51.93 -0.35 0.44 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.08 1.49 7.71 -51.93 -0.40 1.09 16 36 H 0.07 1.52 6.64 -51.93 -0.34 1.17 16 37 H 0.08 1.55 5.71 -51.93 -0.30 1.25 16 38 H 0.14 1.72 7.75 -52.49 -0.41 1.31 16 39 H 0.14 1.01 6.31 -52.49 -0.33 0.68 16 40 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.07 0.25 8.07 -51.93 -0.42 -0.17 16 42 H 0.07 0.33 6.33 -51.93 -0.33 0.00 16 43 H 0.08 0.47 5.35 -51.93 -0.28 0.19 16 44 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 45 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 46 H 0.16 1.55 5.77 -52.48 -0.30 1.25 16 47 H 0.11 1.86 4.43 -59.16 -0.26 1.60 16 48 H 0.08 1.74 7.74 -51.93 -0.40 1.34 16 49 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 51 H 0.38 9.88 5.95 -40.82 -0.24 9.63 16 52 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 400.39 15.07 6.03 6.03 Total: -1.00 -32.34 400.39 -9.16 -41.50 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: -8.13 Total: 11.09 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -1.43 Total: 2.25 kcal Atomic # 7 Polarization: -66.29 SS G_CDS: -0.69 Total: -66.98 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.08 Total: -11.08 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.34 -9.16 -41.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037990410.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.579 kcal (2) G-P(sol) polarization free energy of solvation -32.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds