Wall clock time and date at job start Wed Apr 1 2020 05:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47076 * 2 1 4 4 H 1.08997 * 109.49583 * 55.06546 * 3 2 1 5 5 C 1.53190 * 109.49743 * 294.99994 * 3 2 1 6 6 N 1.46923 * 108.77357 * 185.41370 * 5 3 2 7 7 C 1.34781 * 120.62976 * 233.58345 * 6 5 3 8 8 O 1.21552 * 119.99948 * 357.47586 * 7 6 5 9 9 C 1.47841 * 119.99999 * 177.47641 * 7 6 5 10 10 C 1.39522 * 119.63673 * 206.08354 * 9 7 6 11 11 C 1.38230 * 119.15984 * 179.97438 * 10 9 7 12 12 C 1.39448 * 118.42424 * 0.02562 * 11 10 9 13 13 N 1.39073 * 120.39870 * 180.02562 * 12 11 10 14 14 C 1.46504 * 119.99779 * 0.02562 * 13 12 11 15 15 C 1.46494 * 120.00228 * 179.97438 * 13 12 11 16 16 C 1.39460 * 119.20314 * 359.97438 * 12 11 10 17 17 N 1.31328 * 120.77065 * 359.72308 * 16 12 11 18 18 C 1.46931 * 118.73840 * 53.86299 * 6 5 3 19 19 C 1.53621 * 108.53955 * 306.08938 * 18 6 5 20 20 C 1.53038 * 109.24278 * 54.86085 * 19 18 6 21 21 H 1.08999 * 109.46389 * 178.48387 * 20 19 18 22 22 N 1.46508 * 109.46229 * 58.52572 * 20 19 18 23 23 C 1.36936 * 119.99805 * 84.93186 * 22 20 19 24 24 H 1.07996 * 120.00017 * 0.02562 * 23 22 20 25 25 C 1.38807 * 120.00070 * 180.02562 * 23 22 20 26 26 N 1.31620 * 120.00008 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 120.00119 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.47461 * 89.99771 * 27 25 23 29 29 H 1.48507 * 109.46851 * 209.99736 * 27 25 23 30 30 H 1.48498 * 109.47200 * 329.99121 * 27 25 23 31 31 H 1.09002 * 109.46784 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47109 * 300.00383 * 1 2 3 33 33 H 1.08997 * 109.46711 * 60.00150 * 1 2 3 34 34 H 1.09003 * 109.47267 * 240.00231 * 2 1 3 35 35 H 1.08992 * 109.47445 * 120.00314 * 2 1 3 36 36 H 1.08998 * 109.58920 * 65.62330 * 5 3 2 37 37 H 1.09008 * 109.70444 * 305.26891 * 5 3 2 38 38 H 1.08002 * 120.42243 * 359.97438 * 10 9 7 39 39 H 1.08000 * 120.78742 * 179.97438 * 11 10 9 40 40 H 1.09005 * 109.47276 * 90.00293 * 14 13 12 41 41 H 1.09006 * 109.46918 * 209.99507 * 14 13 12 42 42 H 1.09000 * 109.47341 * 329.99556 * 14 13 12 43 43 H 1.09001 * 109.47096 * 90.00124 * 15 13 12 44 44 H 1.09004 * 109.47332 * 210.00594 * 15 13 12 45 45 H 1.09007 * 109.47482 * 330.00284 * 15 13 12 46 46 H 1.08002 * 119.61990 * 180.02562 * 16 12 11 47 47 H 1.08997 * 109.58692 * 65.92634 * 18 6 5 48 48 H 1.09004 * 109.58405 * 186.35337 * 18 6 5 49 49 H 1.08993 * 109.63732 * 294.86759 * 19 18 6 50 50 H 1.09003 * 109.45688 * 174.74009 * 19 18 6 51 51 H 0.96993 * 119.99990 * 264.93493 * 22 20 19 52 52 H 0.97003 * 120.00368 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6066 1.9816 0.8423 5 6 1.6351 2.1280 -1.3088 6 7 2.2415 3.4656 -1.3493 7 6 1.4816 4.5579 -1.5637 8 8 0.2900 4.4381 -1.7715 9 6 2.0974 5.9019 -1.5463 10 6 1.3188 7.0134 -1.2223 11 6 1.9048 8.2653 -1.2084 12 6 3.2598 8.3674 -1.5216 13 7 3.8911 9.6066 -1.5197 14 6 3.1322 10.8147 -1.1867 15 6 5.3151 9.7038 -1.8495 16 6 3.9746 7.2118 -1.8357 17 7 3.3873 6.0371 -1.8335 18 6 3.6931 3.5893 -1.1578 19 6 4.0741 2.8880 0.1548 20 6 3.5656 1.4449 0.1217 21 1 3.8575 0.9358 1.0402 22 7 4.1480 0.7484 -1.0282 23 6 5.3861 0.1726 -0.9246 24 1 5.9330 0.2316 0.0048 25 6 5.9382 -0.4868 -2.0141 26 7 5.2714 -0.5591 -3.1467 27 14 7.6268 -1.2729 -1.8727 28 1 7.4822 -2.6770 -1.4114 29 1 8.2943 -1.2538 -3.1992 30 1 8.4464 -0.5126 -0.8953 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 0.5497 2.2174 -1.3539 37 1 1.9889 1.5406 -2.1561 38 1 0.2716 6.8972 -0.9853 39 1 1.3267 9.1435 -0.9618 40 1 3.1830 10.9911 -0.1123 41 1 3.5572 11.6680 -1.7154 42 1 2.0919 10.6841 -1.4848 43 1 5.4301 9.8508 -2.9234 44 1 5.7544 10.5480 -1.3180 45 1 5.8205 8.7848 -1.5524 46 1 5.0244 7.2831 -2.0789 47 1 4.2131 3.1178 -1.9916 48 1 3.9659 4.6432 -1.1031 49 1 3.6219 3.4138 0.9957 50 1 5.1585 2.8891 0.2656 51 1 3.6566 0.6952 -1.8627 52 1 5.6570 -1.0203 -3.9080 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037990411.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:54:50 Heat of formation + Delta-G solvation = 39.455093 kcal Electronic energy + Delta-G solvation = -31549.252593 eV Core-core repulsion = 27549.835377 eV Total energy + Delta-G solvation = -3999.417217 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.84847 -39.47260 -37.72982 -36.89751 -34.28823 -33.63504 -32.46541 -31.55194 -30.80926 -29.20982 -28.83142 -28.36713 -26.21536 -24.60436 -23.73610 -23.50980 -23.15707 -22.00832 -20.63800 -20.03640 -18.41392 -17.57993 -17.32170 -17.11488 -16.51674 -15.81555 -15.56758 -15.06590 -14.89405 -14.65942 -14.49821 -14.38573 -13.95090 -13.70902 -13.55863 -13.39507 -13.22751 -13.13133 -13.05347 -12.81639 -12.64444 -12.48478 -12.38481 -12.18627 -11.99603 -11.51377 -11.28307 -10.96715 -10.91452 -10.76744 -10.65742 -10.45498 -10.23559 -10.17083 -10.09697 -9.90558 -9.67294 -9.66193 -9.44640 -9.00666 -8.66326 -8.05442 -7.68252 -6.86340 -5.70114 -2.97655 0.87639 1.15819 2.63027 2.97771 3.41834 3.46732 3.52163 3.53607 3.86853 4.32972 4.46707 4.54471 4.64780 4.66224 4.79821 4.87111 4.95036 5.11655 5.15686 5.22783 5.28673 5.30371 5.40713 5.48720 5.54444 5.66574 5.71822 5.76230 5.82368 5.83775 5.94214 5.99422 6.01412 6.07874 6.23713 6.25822 6.30959 6.43980 6.49863 6.57154 6.67199 6.68684 6.73810 6.80356 6.89751 6.94199 6.99701 7.10736 7.22335 7.76341 7.77272 7.95099 8.48517 8.54778 9.59860 10.18324 10.53632 11.52471 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010780 B = 0.003192 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.682295 B = 8770.768460 C =10762.235190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.102 4.102 4 H 0.064 0.936 5 C 0.117 3.883 6 N -0.580 5.580 7 C 0.571 3.429 8 O -0.557 6.557 9 C 0.023 3.977 10 C -0.061 4.061 11 C -0.170 4.170 12 C 0.183 3.817 13 N -0.626 5.626 14 C 0.089 3.911 15 C 0.087 3.913 16 C 0.022 3.978 17 N -0.399 5.399 18 C 0.089 3.911 19 C -0.150 4.150 20 C 0.178 3.822 21 H 0.047 0.953 22 N -0.718 5.718 23 C -0.233 4.233 24 H 0.068 0.932 25 C -0.013 4.013 26 N -0.932 5.932 27 Si 0.903 3.097 28 H -0.292 1.292 29 H -0.293 1.293 30 H -0.283 1.283 31 H 0.049 0.951 32 H 0.047 0.953 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.143 0.857 39 H 0.138 0.862 40 H 0.052 0.948 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.054 0.946 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.160 0.840 47 H 0.080 0.920 48 H 0.123 0.877 49 H 0.042 0.958 50 H 0.070 0.930 51 H 0.384 0.616 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.257 22.219 5.683 23.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.122 4.122 4 H 0.083 0.917 5 C -0.005 4.005 6 N -0.309 5.309 7 C 0.358 3.642 8 O -0.436 6.436 9 C -0.116 4.116 10 C -0.082 4.082 11 C -0.200 4.200 12 C 0.076 3.924 13 N -0.336 5.336 14 C -0.054 4.054 15 C -0.056 4.056 16 C -0.143 4.143 17 N -0.109 5.109 18 C -0.033 4.033 19 C -0.191 4.191 20 C 0.068 3.932 21 H 0.065 0.935 22 N -0.360 5.360 23 C -0.364 4.364 24 H 0.086 0.914 25 C -0.209 4.209 26 N -0.581 5.581 27 Si 0.735 3.265 28 H -0.220 1.220 29 H -0.220 1.220 30 H -0.209 1.209 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.161 0.839 39 H 0.156 0.844 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.177 0.823 47 H 0.098 0.902 48 H 0.140 0.860 49 H 0.061 0.939 50 H 0.088 0.912 51 H 0.219 0.781 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.149 21.484 5.412 22.746 hybrid contribution 0.599 0.311 -0.028 0.676 sum -4.550 21.796 5.383 22.907 Atomic orbital electron populations 1.21854 0.96880 1.00948 1.01351 1.21419 0.94217 0.95839 1.03314 1.21732 0.97486 0.95986 0.96967 0.91720 1.21718 0.98663 0.81819 0.98306 1.47991 1.09362 1.05779 1.67770 1.17772 0.85689 0.83377 0.77330 1.90729 1.14939 1.86269 1.51696 1.20872 0.90125 0.94484 1.06139 1.21780 1.00959 0.91039 0.94412 1.21034 0.93147 0.98301 1.07511 1.19074 0.92640 0.86778 0.93864 1.46227 1.09547 1.03849 1.73980 1.21719 0.96947 0.86360 1.00363 1.21764 0.80072 1.03139 1.00587 1.22570 1.00680 0.86165 1.04886 1.67553 1.09751 1.24424 1.09195 1.22768 0.77954 1.04137 0.98474 1.22619 1.01394 0.98910 0.96223 1.20235 0.89699 0.90951 0.92348 0.93488 1.42461 1.18981 1.63930 1.10632 1.19208 0.93616 1.26633 0.96950 0.91377 1.24686 0.98468 1.01698 0.96054 1.69654 1.38037 1.48180 1.02221 0.86251 0.84432 0.79301 0.76553 1.21959 1.21967 1.20920 0.93230 0.93429 0.92742 0.90484 0.92111 0.89728 0.90701 0.83875 0.84449 0.92948 0.91165 0.91103 0.92733 0.91112 0.90694 0.82305 0.90166 0.85998 0.93913 0.91158 0.78095 0.93634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.67 37.16 0.36 -1.84 16 2 C -0.11 -1.86 5.19 -26.73 -0.14 -1.99 16 3 C -0.10 -1.78 2.14 -90.50 -0.19 -1.98 16 4 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 5 C 0.12 2.16 5.01 -3.71 -0.02 2.14 16 6 N -0.58 -10.70 2.97 -173.61 -0.51 -11.22 16 7 C 0.57 10.47 7.57 -12.33 -0.09 10.38 16 8 O -0.56 -11.25 16.02 5.32 0.09 -11.16 16 9 C 0.02 0.35 6.40 -83.02 -0.53 -0.18 16 10 C -0.06 -0.77 9.61 -39.11 -0.38 -1.14 16 11 C -0.17 -1.71 9.29 -39.13 -0.36 -2.07 16 12 C 0.18 1.84 6.57 -83.67 -0.55 1.29 16 13 N -0.63 -4.63 3.39 -187.39 -0.64 -5.26 16 14 C 0.09 0.43 10.20 59.85 0.61 1.04 16 15 C 0.09 0.47 10.19 59.84 0.61 1.08 16 16 C 0.02 0.26 10.37 -17.31 -0.18 0.08 16 17 N -0.40 -5.94 6.45 -9.63 -0.06 -6.00 16 18 C 0.09 1.64 5.79 -3.48 -0.02 1.62 16 19 C -0.15 -2.76 5.79 -26.39 -0.15 -2.91 16 20 C 0.18 3.53 2.53 -67.88 -0.17 3.36 16 21 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 22 N -0.72 -17.24 3.71 -53.38 -0.20 -17.43 16 23 C -0.23 -6.26 9.93 -15.06 -0.15 -6.41 16 24 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 25 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 26 N -0.93 -27.79 13.06 55.49 0.72 -27.07 16 27 Si 0.90 22.27 29.55 -169.99 -5.02 17.25 16 28 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 29 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 30 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.79 6.70 -51.93 -0.35 0.44 16 34 H 0.08 1.50 7.69 -51.93 -0.40 1.10 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.08 1.54 5.73 -51.93 -0.30 1.25 16 37 H 0.07 1.53 6.65 -51.92 -0.35 1.18 16 38 H 0.14 1.69 7.85 -52.49 -0.41 1.27 16 39 H 0.14 0.99 6.25 -52.49 -0.33 0.67 16 40 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.07 0.23 8.07 -51.93 -0.42 -0.19 16 42 H 0.07 0.32 6.22 -51.93 -0.32 0.00 16 43 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.07 0.26 8.07 -51.93 -0.42 -0.16 16 45 H 0.07 0.40 6.20 -51.92 -0.32 0.08 16 46 H 0.16 1.51 6.14 -52.49 -0.32 1.19 16 47 H 0.08 1.74 7.74 -51.93 -0.40 1.34 16 48 H 0.12 2.10 3.99 -76.17 -0.30 1.80 16 49 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 50 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 51 H 0.38 9.92 5.94 -40.82 -0.24 9.68 16 52 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 400.84 15.07 6.04 6.04 Total: -1.00 -32.56 400.84 -9.27 -41.83 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -8.23 Total: 11.03 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -1.45 Total: 2.00 kcal Atomic # 7 Polarization: -66.30 SS G_CDS: -0.69 Total: -66.98 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.09 Total: -11.16 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.56 -9.27 -41.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037990411.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.281 kcal (2) G-P(sol) polarization free energy of solvation -32.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds