Wall clock time and date at job start Wed Apr 1 2020 05:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.46987 * 2 1 4 4 H 1.09004 * 109.52714 * 54.91531 * 3 2 1 5 5 C 1.52761 * 109.56365 * 294.96033 * 3 2 1 6 6 N 1.46922 * 109.00969 * 185.55016 * 5 3 2 7 7 C 1.34779 * 120.63621 * 233.58676 * 6 5 3 8 8 O 1.21558 * 119.99742 * 7.61614 * 7 6 5 9 9 C 1.47836 * 120.00196 * 187.61539 * 7 6 5 10 10 C 1.39534 * 119.63591 * 189.65316 * 9 7 6 11 11 C 1.38220 * 119.15772 * 179.97438 * 10 9 7 12 12 C 1.39450 * 118.43174 * 0.02562 * 11 10 9 13 13 N 1.39062 * 120.40130 * 179.97438 * 12 11 10 14 14 C 1.46504 * 120.00028 * 180.02562 * 13 12 11 15 15 C 1.46502 * 120.00599 * 0.02562 * 13 12 11 16 16 C 1.39467 * 119.19379 * 359.97438 * 12 11 10 17 17 N 1.31314 * 120.77380 * 0.25979 * 16 12 11 18 18 C 1.46925 * 118.73752 * 53.31405 * 6 5 3 19 19 C 1.53200 * 108.77462 * 306.64271 * 18 6 5 20 20 C 1.53037 * 109.49816 * 174.99577 * 3 2 1 21 21 H 1.09006 * 109.46145 * 61.29675 * 20 3 2 22 22 N 1.46497 * 109.45291 * 301.32872 * 20 3 2 23 23 C 1.36931 * 120.00281 * 154.93619 * 22 20 3 24 24 H 1.08005 * 120.00367 * 0.02562 * 23 22 20 25 25 C 1.38815 * 120.00212 * 180.02562 * 23 22 20 26 26 N 1.31620 * 119.99975 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 120.00070 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.47106 * 359.97438 * 27 25 23 29 29 H 1.48501 * 109.47631 * 119.99564 * 27 25 23 30 30 H 1.48503 * 109.47049 * 239.99666 * 27 25 23 31 31 H 1.08996 * 109.47882 * 300.00161 * 1 2 3 32 32 H 1.09007 * 109.47294 * 60.00466 * 1 2 3 33 33 H 1.08997 * 109.47011 * 179.97438 * 1 2 3 34 34 H 1.08994 * 109.47365 * 239.99859 * 2 1 3 35 35 H 1.09003 * 109.46824 * 119.99597 * 2 1 3 36 36 H 1.09004 * 109.50802 * 65.67256 * 5 3 2 37 37 H 1.08991 * 109.43391 * 305.39095 * 5 3 2 38 38 H 1.08002 * 120.42189 * 0.02562 * 10 9 7 39 39 H 1.08008 * 120.78542 * 179.97438 * 11 10 9 40 40 H 1.09004 * 109.46618 * 90.00071 * 14 13 12 41 41 H 1.08999 * 109.47573 * 210.00198 * 14 13 12 42 42 H 1.08995 * 109.46825 * 330.00346 * 14 13 12 43 43 H 1.09001 * 109.47309 * 89.99536 * 15 13 12 44 44 H 1.08995 * 109.47832 * 209.99912 * 15 13 12 45 45 H 1.09002 * 109.46925 * 330.00466 * 15 13 12 46 46 H 1.07995 * 119.61257 * 179.97438 * 16 12 11 47 47 H 1.09003 * 109.58910 * 66.42572 * 18 6 5 48 48 H 1.09001 * 109.59143 * 186.71490 * 18 6 5 49 49 H 1.08995 * 109.49865 * 174.58640 * 19 18 6 50 50 H 1.09002 * 109.49562 * 294.67862 * 19 18 6 51 51 H 0.96999 * 119.99949 * 334.94141 * 22 20 3 52 52 H 0.96997 * 120.00088 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6046 1.9828 0.8407 5 6 1.6377 2.1272 -1.3050 6 7 2.2450 3.4643 -1.3508 7 6 1.4856 4.5565 -1.5674 8 8 0.2740 4.4597 -1.5891 9 6 2.1260 5.8721 -1.7785 10 6 1.3414 7.0258 -1.8002 11 6 1.9505 8.2508 -1.9978 12 6 3.3340 8.2843 -2.1693 13 7 3.9889 9.4943 -2.3715 14 6 5.4427 9.5193 -2.5512 15 6 3.2252 10.7441 -2.4048 16 6 4.0529 7.0897 -2.1355 17 7 3.4413 5.9425 -1.9501 18 6 3.6951 3.5888 -1.1499 19 6 4.0735 2.8882 0.1589 20 6 3.5651 1.4451 0.1258 21 1 4.0008 0.9261 -0.7280 22 7 3.9538 0.7623 1.3623 23 6 5.1913 0.1854 1.4660 24 1 5.8811 0.2341 0.6363 25 6 5.5594 -0.4620 2.6374 26 7 4.7191 -0.5210 3.6487 27 14 7.2479 -1.2484 2.7791 28 1 7.9971 -1.0436 1.5133 29 1 7.9923 -0.6238 3.9020 30 1 7.0964 -2.7035 3.0342 31 1 -0.3635 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8901 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8899 35 1 1.8932 -0.5138 0.8901 36 1 0.5523 2.2172 -1.3494 37 1 1.9922 1.5358 -2.1491 38 1 0.2720 6.9626 -1.6635 39 1 1.3686 9.1604 -2.0197 40 1 5.6794 9.4229 -3.6108 41 1 5.8392 10.4622 -2.1747 42 1 5.8909 8.6915 -2.0019 43 1 3.1595 11.1567 -1.3981 44 1 3.7258 11.4586 -3.0583 45 1 2.2220 10.5469 -2.7828 46 1 5.1245 7.1078 -2.2680 47 1 4.2209 3.1189 -1.9811 48 1 3.9672 4.6428 -1.0944 49 1 5.1576 2.8895 0.2720 50 1 3.6191 3.4149 0.9981 51 1 3.3345 0.7188 2.1076 52 1 4.9764 -0.9731 4.4674 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037990413.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:54:55 Heat of formation + Delta-G solvation = 39.232939 kcal Electronic energy + Delta-G solvation = -31068.018330 eV Core-core repulsion = 27068.591480 eV Total energy + Delta-G solvation = -3999.426850 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.96470 -39.53997 -37.72730 -37.00241 -34.60798 -33.67681 -32.56390 -31.59326 -30.92278 -29.31277 -28.90707 -28.54991 -26.23302 -24.73648 -23.80430 -23.49430 -22.75303 -21.86772 -20.66712 -20.16234 -19.23391 -17.70454 -17.43763 -16.97061 -16.61404 -15.85801 -15.69136 -15.21630 -14.96560 -14.88200 -14.61083 -14.20950 -14.03943 -13.70882 -13.64395 -13.43109 -13.30047 -13.15015 -13.10400 -12.87605 -12.75015 -12.56018 -12.44831 -12.30089 -11.97029 -11.55479 -11.38758 -11.16631 -10.87053 -10.82821 -10.70836 -10.51899 -10.25057 -10.10667 -10.08697 -9.98775 -9.80753 -9.66773 -9.46347 -9.08584 -8.66280 -8.27315 -7.79061 -6.85972 -5.70781 -2.98323 0.73407 1.05106 2.54217 2.85032 3.25792 3.46071 3.51812 3.53949 3.83054 4.15388 4.37865 4.44370 4.57848 4.63946 4.69671 4.79856 4.86621 5.01192 5.08273 5.16972 5.21453 5.26706 5.37465 5.44656 5.48764 5.60368 5.63282 5.71770 5.74841 5.78853 5.80859 5.89228 6.00969 6.01563 6.14350 6.24804 6.28349 6.42755 6.50923 6.53783 6.58846 6.61563 6.65075 6.74454 6.83318 6.92421 7.00117 7.11107 7.23267 7.60495 7.76110 7.78376 8.39855 8.47886 9.59053 10.18336 10.53457 11.52032 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011630 B = 0.002767 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.903686 B =10115.208349 C =12085.687593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.103 4.103 4 H 0.068 0.932 5 C 0.117 3.883 6 N -0.585 5.585 7 C 0.574 3.426 8 O -0.553 6.553 9 C 0.018 3.982 10 C -0.056 4.056 11 C -0.170 4.170 12 C 0.186 3.814 13 N -0.625 5.625 14 C 0.087 3.913 15 C 0.088 3.912 16 C 0.021 3.979 17 N -0.400 5.400 18 C 0.077 3.923 19 C -0.150 4.150 20 C 0.182 3.818 21 H 0.046 0.954 22 N -0.721 5.721 23 C -0.232 4.232 24 H 0.070 0.930 25 C -0.016 4.016 26 N -0.933 5.933 27 Si 0.903 3.097 28 H -0.281 1.281 29 H -0.293 1.293 30 H -0.293 1.293 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.056 0.944 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.064 0.936 38 H 0.146 0.854 39 H 0.139 0.861 40 H 0.054 0.946 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.053 0.947 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.161 0.839 47 H 0.058 0.942 48 H 0.138 0.862 49 H 0.072 0.928 50 H 0.054 0.946 51 H 0.383 0.617 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.678 22.369 -14.887 27.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.123 4.123 4 H 0.087 0.913 5 C -0.005 4.005 6 N -0.315 5.315 7 C 0.361 3.639 8 O -0.432 6.432 9 C -0.121 4.121 10 C -0.077 4.077 11 C -0.200 4.200 12 C 0.079 3.921 13 N -0.334 5.334 14 C -0.056 4.056 15 C -0.055 4.055 16 C -0.144 4.144 17 N -0.111 5.111 18 C -0.046 4.046 19 C -0.192 4.192 20 C 0.072 3.928 21 H 0.064 0.936 22 N -0.362 5.362 23 C -0.363 4.363 24 H 0.088 0.912 25 C -0.211 4.211 26 N -0.582 5.582 27 Si 0.735 3.265 28 H -0.206 1.206 29 H -0.221 1.221 30 H -0.220 1.220 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.083 0.917 38 H 0.164 0.836 39 H 0.157 0.843 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.072 0.928 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.178 0.822 47 H 0.077 0.923 48 H 0.154 0.846 49 H 0.091 0.909 50 H 0.072 0.928 51 H 0.217 0.783 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.574 21.613 -14.942 26.517 hybrid contribution 0.512 0.354 0.502 0.800 sum -3.062 21.967 -14.440 26.466 Atomic orbital electron populations 1.21841 0.96870 1.00913 1.01323 1.21449 0.94324 0.95812 1.03378 1.21683 0.97751 0.96101 0.96807 0.91313 1.21694 0.99316 0.81679 0.97841 1.47976 1.09346 1.05952 1.68265 1.17761 0.86003 0.83116 0.77013 1.90737 1.13372 1.85492 1.53558 1.20864 0.89584 0.94307 1.07347 1.21828 1.01640 0.90869 0.93409 1.21072 0.92494 0.98834 1.07586 1.19088 0.92520 0.87232 0.93250 1.46256 1.06705 1.03744 1.76724 1.21776 0.79084 1.03282 1.01467 1.21738 0.96896 0.85202 1.01654 1.22588 1.00446 0.86190 1.05201 1.67505 1.09727 1.26397 1.07460 1.23001 0.78181 1.05956 0.97465 1.22671 1.01771 0.98785 0.95937 1.20230 0.90728 0.90911 0.90916 0.93581 1.42433 1.16419 1.64554 1.12768 1.19273 0.91803 1.26724 0.98493 0.91234 1.24716 0.98089 1.01810 0.96514 1.69672 1.35125 1.48696 1.04714 0.86164 0.84176 0.78873 0.77283 1.20618 1.22050 1.22020 0.93000 0.93215 0.93263 0.92520 0.89849 0.89285 0.91732 0.83579 0.84342 0.92704 0.91017 0.90681 0.92822 0.91086 0.91058 0.82246 0.92329 0.84573 0.90946 0.92756 0.78299 0.93690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.67 37.16 0.36 -1.90 16 2 C -0.11 -1.93 5.31 -26.73 -0.14 -2.07 16 3 C -0.10 -1.84 1.91 -90.72 -0.17 -2.02 16 4 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 5 C 0.12 1.91 5.31 -3.93 -0.02 1.88 16 6 N -0.59 -9.63 2.98 -174.15 -0.52 -10.15 16 7 C 0.57 9.59 7.64 -12.33 -0.09 9.49 16 8 O -0.55 -10.33 15.78 5.31 0.08 -10.25 16 9 C 0.02 0.25 6.57 -83.02 -0.55 -0.30 16 10 C -0.06 -0.65 9.61 -39.11 -0.38 -1.03 16 11 C -0.17 -1.55 9.28 -39.14 -0.36 -1.91 16 12 C 0.19 1.66 6.57 -83.67 -0.55 1.11 16 13 N -0.62 -4.02 3.39 -187.39 -0.64 -4.65 16 14 C 0.09 0.38 10.19 59.85 0.61 0.99 16 15 C 0.09 0.36 10.20 59.85 0.61 0.97 16 16 C 0.02 0.21 10.37 -17.32 -0.18 0.03 16 17 N -0.40 -5.18 6.12 -9.64 -0.06 -5.24 16 18 C 0.08 1.21 5.88 -3.71 -0.02 1.19 16 19 C -0.15 -2.81 5.66 -26.61 -0.15 -2.96 16 20 C 0.18 3.69 2.20 -67.89 -0.15 3.54 16 21 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 22 N -0.72 -17.97 4.33 -53.39 -0.23 -18.20 16 23 C -0.23 -6.37 9.93 -15.06 -0.15 -6.52 16 24 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 25 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 26 N -0.93 -28.28 13.06 55.49 0.72 -27.56 16 27 Si 0.90 22.48 29.55 -169.99 -5.02 17.46 16 28 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 29 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 30 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.05 0.68 6.70 -51.93 -0.35 0.34 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.08 1.70 7.22 -51.93 -0.37 1.32 16 36 H 0.09 1.47 5.71 -51.93 -0.30 1.18 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.15 1.62 7.66 -52.49 -0.40 1.21 16 39 H 0.14 0.89 6.25 -52.48 -0.33 0.56 16 40 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 41 H 0.07 0.21 8.07 -51.93 -0.42 -0.21 16 42 H 0.07 0.32 6.20 -51.93 -0.32 0.00 16 43 H 0.05 0.21 8.14 -51.93 -0.42 -0.22 16 44 H 0.07 0.18 8.07 -51.93 -0.42 -0.24 16 45 H 0.07 0.27 6.22 -51.93 -0.32 -0.06 16 46 H 0.16 1.23 6.14 -52.49 -0.32 0.91 16 47 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 48 H 0.14 2.06 4.03 -84.16 -0.34 1.72 16 49 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 50 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 51 H 0.38 10.29 7.51 -40.82 -0.31 9.98 16 52 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 403.77 15.07 6.08 6.08 Total: -1.00 -33.29 403.77 -9.40 -42.69 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -8.39 Total: 9.84 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -1.43 Total: -0.03 kcal Atomic # 7 Polarization: -65.08 SS G_CDS: -0.72 Total: -65.80 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.08 Total: -10.25 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.29 -9.40 -42.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037990413.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.924 kcal (2) G-P(sol) polarization free energy of solvation -33.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds