Wall clock time and date at job start Wed Apr 1 2020 05:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47333 * 2 1 4 4 H 1.08996 * 109.49731 * 304.99728 * 3 2 1 5 5 C 1.53191 * 109.49690 * 65.06228 * 3 2 1 6 6 N 1.46924 * 108.77257 * 174.58389 * 5 3 2 7 7 C 1.34770 * 120.62905 * 126.41796 * 6 5 3 8 8 O 1.21559 * 120.00142 * 352.08901 * 7 6 5 9 9 C 1.47842 * 120.00377 * 172.09150 * 7 6 5 10 10 C 1.39536 * 119.63986 * 170.37447 * 9 7 6 11 11 C 1.38215 * 119.15765 * 179.97438 * 10 9 7 12 12 C 1.39453 * 118.42905 * 0.02562 * 11 10 9 13 13 N 1.39071 * 120.40050 * 179.97438 * 12 11 10 14 14 C 1.46497 * 119.99787 * 359.97438 * 13 12 11 15 15 C 1.46499 * 120.00101 * 179.97438 * 13 12 11 16 16 C 1.39468 * 119.19914 * 359.97438 * 12 11 10 17 17 N 1.31322 * 120.77267 * 359.72845 * 16 12 11 18 18 C 1.46928 * 118.73941 * 306.39290 * 6 5 3 19 19 C 1.53187 * 108.77683 * 53.61362 * 18 6 5 20 20 C 1.53041 * 109.33742 * 305.37740 * 19 18 6 21 21 H 1.09004 * 109.43486 * 301.31607 * 20 19 18 22 22 N 1.46496 * 109.48720 * 181.35491 * 20 19 18 23 23 C 1.36942 * 120.00144 * 84.91658 * 22 20 19 24 24 H 1.07998 * 119.99396 * 359.97438 * 23 22 20 25 25 C 1.38809 * 120.00216 * 179.97438 * 23 22 20 26 26 N 1.31618 * 119.99972 * 0.02562 * 25 23 22 27 27 Si 1.86793 * 120.00059 * 179.97438 * 25 23 22 28 28 H 1.48494 * 109.47375 * 0.02562 * 27 25 23 29 29 H 1.48507 * 109.47246 * 120.00170 * 27 25 23 30 30 H 1.48499 * 109.47149 * 240.00116 * 27 25 23 31 31 H 1.08991 * 109.47245 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46979 * 300.00164 * 1 2 3 33 33 H 1.09007 * 109.46654 * 59.99948 * 1 2 3 34 34 H 1.09001 * 109.46979 * 239.99836 * 2 1 3 35 35 H 1.08997 * 109.46991 * 120.00393 * 2 1 3 36 36 H 1.08991 * 109.58773 * 294.37700 * 5 3 2 37 37 H 1.09008 * 109.58241 * 54.66127 * 5 3 2 38 38 H 1.08002 * 120.41705 * 0.02562 * 10 9 7 39 39 H 1.07999 * 120.78525 * 179.97438 * 11 10 9 40 40 H 1.09001 * 109.47660 * 90.00217 * 14 13 12 41 41 H 1.09003 * 109.46747 * 209.99792 * 14 13 12 42 42 H 1.08998 * 109.47594 * 329.99440 * 14 13 12 43 43 H 1.09000 * 109.47028 * 60.00084 * 15 13 12 44 44 H 1.09000 * 109.47226 * 179.97438 * 15 13 12 45 45 H 1.08998 * 109.47237 * 300.00680 * 15 13 12 46 46 H 1.07998 * 119.61462 * 179.97438 * 16 12 11 47 47 H 1.09005 * 109.58419 * 173.39634 * 18 6 5 48 48 H 1.08994 * 109.58810 * 293.67388 * 18 6 5 49 49 H 1.08999 * 109.50163 * 65.31217 * 19 18 6 50 50 H 1.09002 * 109.49782 * 185.38355 * 19 18 6 51 51 H 0.96996 * 120.00023 * 264.90952 * 22 20 19 52 52 H 0.97000 * 120.00066 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6058 1.9819 -0.8417 5 6 1.6365 2.1275 1.3094 6 7 2.2431 3.4650 1.3498 7 6 1.4836 4.5572 1.5655 8 8 0.2720 4.4607 1.5854 9 6 2.1238 5.8728 1.7777 10 6 1.3394 7.0266 1.7989 11 6 1.9482 8.2513 1.9986 12 6 3.3316 8.2846 2.1714 13 7 3.9865 9.4945 2.3747 14 6 3.2227 10.7443 2.4076 15 6 5.4400 9.5194 2.5558 16 6 4.0504 7.0899 2.1380 17 7 3.4389 5.9428 1.9518 18 6 3.6936 3.5892 1.1512 19 6 4.0741 2.8879 -0.1564 20 6 3.5655 1.4449 -0.1242 21 1 4.0001 0.9261 0.7304 22 7 3.9557 0.7614 -1.3598 23 6 5.1939 0.1855 -1.4620 24 1 5.8829 0.2356 -0.6318 25 6 5.5635 -0.4626 -2.6326 26 7 4.7240 -0.5231 -3.6445 27 14 7.2527 -1.2475 -2.7722 28 1 8.0008 -1.0409 -1.5062 29 1 7.1028 -2.7029 -3.0263 30 1 7.9973 -0.6231 -3.8952 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8901 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 0.5512 2.2168 1.3557 37 1 1.9910 1.5375 2.1547 38 1 0.2699 6.9634 1.6619 39 1 1.3664 9.1610 2.0194 40 1 2.9086 10.9513 3.4306 41 1 3.8475 11.5614 2.0470 42 1 2.3440 10.6501 1.7697 43 1 5.9234 9.1035 1.6718 44 1 5.7706 10.5479 2.7003 45 1 5.7075 8.9251 3.4295 46 1 5.1221 7.1080 2.2706 47 1 3.9655 4.6432 1.0931 48 1 4.2179 3.1222 1.9849 49 1 3.6211 3.4141 -0.9967 50 1 5.1584 2.8895 -0.2680 51 1 3.3370 0.7167 -2.1054 52 1 4.9824 -0.9756 -4.4626 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037990414.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:54:59 Heat of formation + Delta-G solvation = 37.514227 kcal Electronic energy + Delta-G solvation = -31065.005413 eV Core-core repulsion = 27065.504034 eV Total energy + Delta-G solvation = -3999.501379 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.95381 -39.52585 -37.71471 -37.00350 -34.60675 -33.66723 -32.55018 -31.59221 -30.92164 -29.31189 -28.88799 -28.53643 -26.23485 -24.73045 -23.80402 -23.48300 -22.75774 -21.86592 -20.66592 -20.15322 -19.23104 -17.67104 -17.42354 -16.97094 -16.62405 -15.84220 -15.70764 -15.19318 -14.94821 -14.86341 -14.61829 -14.19604 -14.02340 -13.69232 -13.65176 -13.43806 -13.28275 -13.16673 -13.11012 -12.89353 -12.80415 -12.54897 -12.44512 -12.28107 -11.96553 -11.57710 -11.40592 -11.16556 -10.87018 -10.83030 -10.68233 -10.50825 -10.24616 -10.10638 -10.08897 -9.98911 -9.79765 -9.66658 -9.46386 -9.08481 -8.66271 -8.27197 -7.79671 -6.85857 -5.70712 -2.98280 0.73685 1.05514 2.54508 2.85268 3.26064 3.46135 3.51892 3.54012 3.83611 4.18574 4.38306 4.44081 4.55430 4.63957 4.68765 4.81610 4.87833 5.02059 5.07795 5.16535 5.22341 5.26820 5.36992 5.44591 5.48961 5.60882 5.63760 5.71831 5.74859 5.78764 5.80773 5.89022 6.01264 6.01838 6.14723 6.25003 6.28384 6.42721 6.51040 6.54001 6.59277 6.61677 6.65246 6.74411 6.83349 6.92535 7.00115 7.11249 7.23459 7.60920 7.76256 7.78547 8.39946 8.47999 9.59137 10.18421 10.53521 11.52102 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011628 B = 0.002767 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.453762 B =10115.897099 C =12087.132523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.103 4.103 4 H 0.069 0.931 5 C 0.117 3.883 6 N -0.585 5.585 7 C 0.573 3.427 8 O -0.553 6.553 9 C 0.018 3.982 10 C -0.057 4.057 11 C -0.169 4.169 12 C 0.185 3.815 13 N -0.625 5.625 14 C 0.088 3.912 15 C 0.088 3.912 16 C 0.024 3.976 17 N -0.401 5.401 18 C 0.077 3.923 19 C -0.150 4.150 20 C 0.182 3.818 21 H 0.046 0.954 22 N -0.721 5.721 23 C -0.231 4.231 24 H 0.070 0.930 25 C -0.016 4.016 26 N -0.933 5.933 27 Si 0.903 3.097 28 H -0.281 1.281 29 H -0.293 1.293 30 H -0.293 1.293 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.083 0.917 35 H 0.056 0.944 36 H 0.089 0.911 37 H 0.065 0.935 38 H 0.146 0.854 39 H 0.139 0.861 40 H 0.052 0.948 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.077 0.923 45 H 0.060 0.940 46 H 0.159 0.841 47 H 0.138 0.862 48 H 0.058 0.942 49 H 0.054 0.946 50 H 0.072 0.928 51 H 0.383 0.617 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.691 22.455 14.809 27.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.123 4.123 4 H 0.087 0.913 5 C -0.005 4.005 6 N -0.315 5.315 7 C 0.361 3.639 8 O -0.432 6.432 9 C -0.120 4.120 10 C -0.078 4.078 11 C -0.199 4.199 12 C 0.078 3.922 13 N -0.334 5.334 14 C -0.055 4.055 15 C -0.054 4.054 16 C -0.142 4.142 17 N -0.111 5.111 18 C -0.046 4.046 19 C -0.192 4.192 20 C 0.072 3.928 21 H 0.064 0.936 22 N -0.362 5.362 23 C -0.363 4.363 24 H 0.088 0.912 25 C -0.211 4.211 26 N -0.582 5.582 27 Si 0.735 3.265 28 H -0.206 1.206 29 H -0.220 1.220 30 H -0.221 1.221 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.101 0.899 35 H 0.075 0.925 36 H 0.107 0.893 37 H 0.083 0.917 38 H 0.164 0.836 39 H 0.156 0.844 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.096 0.904 45 H 0.079 0.921 46 H 0.176 0.824 47 H 0.154 0.846 48 H 0.077 0.923 49 H 0.072 0.928 50 H 0.091 0.909 51 H 0.217 0.783 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.585 21.700 14.861 26.544 hybrid contribution 0.514 0.350 -0.490 0.792 sum -3.071 22.050 14.371 26.498 Atomic orbital electron populations 1.21841 0.96872 1.00907 1.01321 1.21453 0.94324 0.95844 1.03370 1.21758 0.97717 0.96076 0.96738 0.91293 1.21779 0.99316 0.81648 0.97803 1.47972 1.09349 1.05923 1.68301 1.17763 0.86007 0.83127 0.77003 1.90737 1.13371 1.85503 1.53545 1.20871 0.89577 0.94319 1.07278 1.21825 1.01633 0.90880 0.93486 1.21075 0.92553 0.98779 1.07502 1.19080 0.92505 0.87218 0.93362 1.46258 1.06740 1.03744 1.76702 1.21768 0.96956 0.85136 1.01634 1.21755 0.79036 1.03024 1.01627 1.22540 1.00437 0.86153 1.05028 1.67518 1.09712 1.26422 1.07495 1.22986 0.78159 1.05939 0.97470 1.22667 1.01760 0.98788 0.95938 1.20229 0.90726 0.90908 0.90923 0.93596 1.42435 1.16382 1.64556 1.12806 1.19273 0.91772 1.26730 0.98512 0.91233 1.24713 0.98091 1.01809 0.96515 1.69673 1.35134 1.48678 1.04725 0.86163 0.84184 0.78865 0.77280 1.20618 1.22021 1.22050 0.93266 0.93209 0.93010 0.89862 0.92524 0.89294 0.91707 0.83583 0.84351 0.92912 0.91060 0.91062 0.92016 0.90444 0.92113 0.82362 0.84615 0.92316 0.92755 0.90949 0.78302 0.93692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.67 37.16 0.36 -1.90 16 2 C -0.11 -1.93 5.31 -26.73 -0.14 -2.07 16 3 C -0.10 -1.84 1.92 -90.50 -0.17 -2.01 16 4 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 5 C 0.12 1.90 5.34 -3.71 -0.02 1.88 16 6 N -0.59 -9.64 2.97 -173.89 -0.52 -10.15 16 7 C 0.57 9.59 7.64 -12.33 -0.09 9.50 16 8 O -0.55 -10.34 15.78 5.31 0.08 -10.26 16 9 C 0.02 0.26 6.57 -83.02 -0.55 -0.29 16 10 C -0.06 -0.66 9.61 -39.11 -0.38 -1.04 16 11 C -0.17 -1.55 9.28 -39.14 -0.36 -1.91 16 12 C 0.18 1.66 6.57 -83.67 -0.55 1.11 16 13 N -0.62 -4.01 3.39 -187.39 -0.64 -4.65 16 14 C 0.09 0.36 10.17 59.85 0.61 0.97 16 15 C 0.09 0.38 9.40 59.85 0.56 0.94 16 16 C 0.02 0.24 10.48 -17.31 -0.18 0.06 16 17 N -0.40 -5.21 6.12 -9.63 -0.06 -5.27 16 18 C 0.08 1.22 5.87 -3.71 -0.02 1.20 16 19 C -0.15 -2.81 5.66 -26.61 -0.15 -2.96 16 20 C 0.18 3.69 2.19 -67.89 -0.15 3.54 16 21 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 22 N -0.72 -17.97 4.33 -53.38 -0.23 -18.21 16 23 C -0.23 -6.37 9.93 -15.06 -0.15 -6.52 16 24 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 25 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 26 N -0.93 -28.29 13.06 55.49 0.72 -27.57 16 27 Si 0.90 22.49 29.55 -169.99 -5.02 17.47 16 28 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 29 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 30 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.68 6.70 -51.93 -0.35 0.34 16 33 H 0.05 0.78 8.14 -51.92 -0.42 0.35 16 34 H 0.08 1.69 7.22 -51.93 -0.37 1.32 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.09 1.47 5.72 -51.93 -0.30 1.17 16 37 H 0.06 0.99 8.14 -51.92 -0.42 0.56 16 38 H 0.15 1.62 7.66 -52.49 -0.40 1.22 16 39 H 0.14 0.89 6.25 -52.49 -0.33 0.56 16 40 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 41 H 0.07 0.18 7.92 -51.93 -0.41 -0.23 16 42 H 0.07 0.27 6.23 -51.93 -0.32 -0.05 16 43 H 0.06 0.27 7.95 -51.93 -0.41 -0.14 16 44 H 0.08 0.19 7.79 -51.93 -0.40 -0.21 16 45 H 0.06 0.25 7.95 -51.93 -0.41 -0.17 16 46 H 0.16 1.25 6.74 -52.49 -0.35 0.90 16 47 H 0.14 2.06 4.04 -83.77 -0.34 1.72 16 48 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 49 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 50 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 51 H 0.38 10.29 7.51 -40.82 -0.31 9.98 16 52 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 404.83 15.07 6.10 6.10 Total: -1.00 -33.30 404.83 -9.52 -42.82 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -8.48 Total: 9.74 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -1.48 Total: -0.03 kcal Atomic # 7 Polarization: -65.12 SS G_CDS: -0.72 Total: -65.84 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.08 Total: -10.26 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.30 -9.52 -42.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037990414.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.335 kcal (2) G-P(sol) polarization free energy of solvation -33.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds