Wall clock time and date at job start Wed Apr 1 2020 05:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47333 * 2 1 4 4 H 1.08996 * 109.49731 * 304.99728 * 3 2 1 5 5 C 1.53191 * 109.49690 * 65.06228 * 3 2 1 6 6 N 1.46924 * 108.77257 * 174.58389 * 5 3 2 7 7 C 1.34770 * 120.62905 * 126.41796 * 6 5 3 8 8 O 1.21559 * 120.00142 * 352.08901 * 7 6 5 9 9 C 1.47842 * 120.00377 * 172.09150 * 7 6 5 10 10 C 1.39536 * 119.63986 * 170.37447 * 9 7 6 11 11 C 1.38215 * 119.15765 * 179.97438 * 10 9 7 12 12 C 1.39453 * 118.42905 * 0.02562 * 11 10 9 13 13 N 1.39071 * 120.40050 * 179.97438 * 12 11 10 14 14 C 1.46497 * 119.99787 * 359.97438 * 13 12 11 15 15 C 1.46499 * 120.00101 * 179.97438 * 13 12 11 16 16 C 1.39468 * 119.19914 * 359.97438 * 12 11 10 17 17 N 1.31322 * 120.77267 * 359.72845 * 16 12 11 18 18 C 1.46928 * 118.73941 * 306.39290 * 6 5 3 19 19 C 1.53187 * 108.77683 * 53.61362 * 18 6 5 20 20 C 1.53041 * 109.33742 * 305.37740 * 19 18 6 21 21 H 1.09004 * 109.43486 * 301.31607 * 20 19 18 22 22 N 1.46496 * 109.48720 * 181.35491 * 20 19 18 23 23 C 1.36942 * 120.00144 * 84.91658 * 22 20 19 24 24 H 1.07998 * 119.99396 * 359.97438 * 23 22 20 25 25 C 1.38809 * 120.00216 * 179.97438 * 23 22 20 26 26 N 1.31618 * 119.99972 * 0.02562 * 25 23 22 27 27 Si 1.86793 * 120.00059 * 179.97438 * 25 23 22 28 28 H 1.48494 * 109.47375 * 0.02562 * 27 25 23 29 29 H 1.48507 * 109.47246 * 120.00170 * 27 25 23 30 30 H 1.48499 * 109.47149 * 240.00116 * 27 25 23 31 31 H 1.08991 * 109.47245 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46979 * 300.00164 * 1 2 3 33 33 H 1.09007 * 109.46654 * 59.99948 * 1 2 3 34 34 H 1.09001 * 109.46979 * 239.99836 * 2 1 3 35 35 H 1.08997 * 109.46991 * 120.00393 * 2 1 3 36 36 H 1.08991 * 109.58773 * 294.37700 * 5 3 2 37 37 H 1.09008 * 109.58241 * 54.66127 * 5 3 2 38 38 H 1.08002 * 120.41705 * 0.02562 * 10 9 7 39 39 H 1.07999 * 120.78525 * 179.97438 * 11 10 9 40 40 H 1.09001 * 109.47660 * 90.00217 * 14 13 12 41 41 H 1.09003 * 109.46747 * 209.99792 * 14 13 12 42 42 H 1.08998 * 109.47594 * 329.99440 * 14 13 12 43 43 H 1.09000 * 109.47028 * 60.00084 * 15 13 12 44 44 H 1.09000 * 109.47226 * 179.97438 * 15 13 12 45 45 H 1.08998 * 109.47237 * 300.00680 * 15 13 12 46 46 H 1.07998 * 119.61462 * 179.97438 * 16 12 11 47 47 H 1.09005 * 109.58419 * 173.39634 * 18 6 5 48 48 H 1.08994 * 109.58810 * 293.67388 * 18 6 5 49 49 H 1.08999 * 109.50163 * 65.31217 * 19 18 6 50 50 H 1.09002 * 109.49782 * 185.38355 * 19 18 6 51 51 H 0.96996 * 120.00023 * 264.90952 * 22 20 19 52 52 H 0.97000 * 120.00066 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6058 1.9819 -0.8417 5 6 1.6365 2.1275 1.3094 6 7 2.2431 3.4650 1.3498 7 6 1.4836 4.5572 1.5655 8 8 0.2720 4.4607 1.5854 9 6 2.1238 5.8728 1.7777 10 6 1.3394 7.0266 1.7989 11 6 1.9482 8.2513 1.9986 12 6 3.3316 8.2846 2.1714 13 7 3.9865 9.4945 2.3747 14 6 3.2227 10.7443 2.4076 15 6 5.4400 9.5194 2.5558 16 6 4.0504 7.0899 2.1380 17 7 3.4389 5.9428 1.9518 18 6 3.6936 3.5892 1.1512 19 6 4.0741 2.8879 -0.1564 20 6 3.5655 1.4449 -0.1242 21 1 4.0001 0.9261 0.7304 22 7 3.9557 0.7614 -1.3598 23 6 5.1939 0.1855 -1.4620 24 1 5.8829 0.2356 -0.6318 25 6 5.5635 -0.4626 -2.6326 26 7 4.7240 -0.5231 -3.6445 27 14 7.2527 -1.2475 -2.7722 28 1 8.0008 -1.0409 -1.5062 29 1 7.1028 -2.7029 -3.0263 30 1 7.9973 -0.6231 -3.8952 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8901 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 0.5512 2.2168 1.3557 37 1 1.9910 1.5375 2.1547 38 1 0.2699 6.9634 1.6619 39 1 1.3664 9.1610 2.0194 40 1 2.9086 10.9513 3.4306 41 1 3.8475 11.5614 2.0470 42 1 2.3440 10.6501 1.7697 43 1 5.9234 9.1035 1.6718 44 1 5.7706 10.5479 2.7003 45 1 5.7075 8.9251 3.4295 46 1 5.1221 7.1080 2.2706 47 1 3.9655 4.6432 1.0931 48 1 4.2179 3.1222 1.9849 49 1 3.6211 3.4141 -0.9967 50 1 5.1584 2.8895 -0.2680 51 1 3.3370 0.7167 -2.1054 52 1 4.9824 -0.9756 -4.4626 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037990414.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:54:58 Heat of formation + Delta-G solvation = 17.389432 kcal Electronic energy + Delta-G solvation = -31065.878089 eV Core-core repulsion = 27065.504034 eV Total energy + Delta-G solvation = -4000.374056 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.92110 -40.65682 -39.07165 -37.74667 -36.17376 -35.28865 -33.48388 -33.29749 -31.76412 -31.02131 -29.89612 -29.27849 -27.29435 -26.12626 -25.11636 -24.62103 -24.03215 -22.79727 -22.14656 -21.38375 -20.65192 -19.08752 -18.47786 -18.30917 -17.53303 -16.99187 -16.74074 -16.47168 -16.09900 -15.86942 -15.62362 -15.59733 -15.23728 -15.11368 -14.79724 -14.66917 -14.54941 -14.44115 -14.21100 -13.89333 -13.72672 -13.48661 -13.41982 -13.08881 -13.03089 -12.94685 -12.85654 -12.69965 -12.52106 -12.40826 -12.10463 -12.02184 -11.82700 -11.58482 -11.51443 -11.36595 -11.24661 -11.07909 -10.91011 -10.61739 -9.95143 -9.60948 -8.91642 -8.43058 -7.89509 -5.17059 -0.15539 0.28364 1.48499 1.48985 1.59004 1.76137 1.99290 2.10422 2.58928 2.89870 3.22356 3.44050 3.67060 3.76537 3.80077 3.83580 3.94206 4.06044 4.09932 4.18143 4.25479 4.38459 4.41010 4.44116 4.50634 4.53516 4.54271 4.64707 4.71477 4.77515 4.80931 4.83802 4.88164 4.91577 4.93431 4.97367 5.01623 5.06691 5.10704 5.16033 5.23002 5.31710 5.39204 5.45834 5.53103 5.58884 5.60194 5.80958 6.10564 6.21530 6.31825 6.44157 6.79231 7.17881 7.37913 8.13732 8.38448 9.34420 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011628 B = 0.002767 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.453762 B =10115.897099 C =12087.132523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 C -0.091 4.091 4 H 0.048 0.952 5 C 0.123 3.877 6 N -0.592 5.592 7 C 0.569 3.431 8 O -0.582 6.582 9 C -0.020 4.020 10 C -0.058 4.058 11 C -0.169 4.169 12 C 0.196 3.804 13 N -0.618 5.618 14 C 0.079 3.921 15 C 0.079 3.921 16 C 0.018 3.982 17 N -0.417 5.417 18 C 0.089 3.911 19 C -0.139 4.139 20 C 0.179 3.821 21 H 0.045 0.955 22 N -0.731 5.731 23 C -0.227 4.227 24 H 0.076 0.924 25 C -0.079 4.079 26 N -0.972 5.972 27 Si 0.969 3.031 28 H -0.264 1.264 29 H -0.297 1.297 30 H -0.297 1.297 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.044 0.956 34 H 0.047 0.953 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.144 0.856 39 H 0.167 0.833 40 H 0.062 0.938 41 H 0.091 0.909 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.100 0.900 45 H 0.065 0.935 46 H 0.181 0.819 47 H 0.151 0.849 48 H 0.069 0.931 49 H 0.035 0.965 50 H 0.063 0.937 51 H 0.370 0.630 52 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.570 25.050 16.944 30.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.144 4.144 3 C -0.111 4.111 4 H 0.067 0.933 5 C 0.000 4.000 6 N -0.321 5.321 7 C 0.359 3.641 8 O -0.463 6.463 9 C -0.157 4.157 10 C -0.079 4.079 11 C -0.199 4.199 12 C 0.086 3.914 13 N -0.325 5.325 14 C -0.063 4.063 15 C -0.063 4.063 16 C -0.149 4.149 17 N -0.128 5.128 18 C -0.033 4.033 19 C -0.180 4.180 20 C 0.071 3.929 21 H 0.063 0.937 22 N -0.370 5.370 23 C -0.359 4.359 24 H 0.094 0.906 25 C -0.271 4.271 26 N -0.623 5.623 27 Si 0.799 3.201 28 H -0.189 1.189 29 H -0.224 1.224 30 H -0.224 1.224 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.162 0.838 39 H 0.185 0.815 40 H 0.081 0.919 41 H 0.109 0.891 42 H 0.093 0.907 43 H 0.081 0.919 44 H 0.119 0.881 45 H 0.084 0.916 46 H 0.198 0.802 47 H 0.167 0.833 48 H 0.087 0.913 49 H 0.054 0.946 50 H 0.081 0.919 51 H 0.201 0.799 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -2.447 24.352 17.054 29.831 hybrid contribution 0.223 -0.210 -1.063 1.106 sum -2.224 24.142 15.991 29.043 Atomic orbital electron populations 1.21773 0.94751 1.01961 1.01708 1.21356 0.96177 0.94959 1.01955 1.21604 0.95794 0.96560 0.97154 0.93326 1.21696 0.99373 0.81937 0.96966 1.48036 1.09491 1.06020 1.68591 1.18231 0.85784 0.84030 0.76065 1.90698 1.14540 1.86119 1.54935 1.20525 0.90426 0.93496 1.11273 1.21868 1.01507 0.91219 0.93352 1.21312 0.92928 0.98776 1.06845 1.19175 0.92576 0.87977 0.91648 1.46621 1.07860 1.03550 1.74478 1.22017 0.97386 0.84448 1.02494 1.21985 0.77659 1.04763 1.01908 1.22896 1.01397 0.85911 1.04731 1.67216 1.09346 1.28044 1.08190 1.22956 0.78032 1.06541 0.95802 1.22487 1.00805 0.97611 0.97125 1.20421 0.92397 0.91244 0.88838 0.93672 1.42597 1.15518 1.64999 1.13844 1.19631 0.92489 1.25443 0.98351 0.90592 1.25504 1.01738 1.03312 0.96505 1.69838 1.37066 1.50252 1.05186 0.85121 0.80090 0.77338 0.77549 1.18862 1.22409 1.22402 0.91890 0.91737 0.93669 0.93403 0.91651 0.89348 0.90168 0.83781 0.81530 0.91933 0.89065 0.90697 0.91881 0.88142 0.91624 0.80236 0.83320 0.91295 0.94636 0.91871 0.79861 0.94303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.26 9.67 71.98 0.70 -3.57 16 2 C -0.11 -3.74 5.31 30.60 0.16 -3.58 16 3 C -0.09 -3.34 1.92 -10.72 -0.02 -3.36 16 4 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 5 C 0.12 3.99 5.34 86.36 0.46 4.45 16 6 N -0.59 -19.57 2.97 -822.33 -2.44 -22.02 16 7 C 0.57 19.30 7.64 86.79 0.66 19.96 16 8 O -0.58 -22.22 15.78 -3.90 -0.06 -22.28 16 9 C -0.02 -0.56 6.57 41.85 0.27 -0.29 16 10 C -0.06 -1.31 9.61 22.58 0.22 -1.09 16 11 C -0.17 -2.71 9.28 22.56 0.21 -2.50 16 12 C 0.20 3.00 6.57 38.58 0.25 3.26 16 13 N -0.62 -5.71 3.39 -746.79 -2.53 -8.25 16 14 C 0.08 0.33 10.17 127.77 1.30 1.63 16 15 C 0.08 0.39 9.40 127.77 1.20 1.60 16 16 C 0.02 0.32 10.48 85.07 0.89 1.21 16 17 N -0.42 -10.45 6.12 -184.38 -1.13 -11.58 16 18 C 0.09 2.81 5.87 86.36 0.51 3.31 16 19 C -0.14 -5.30 5.66 30.67 0.17 -5.13 16 20 C 0.18 7.42 2.19 45.02 0.10 7.52 16 21 H 0.05 1.88 8.08 -2.38 -0.02 1.87 16 22 N -0.73 -37.61 4.33 -322.81 -1.40 -39.01 16 23 C -0.23 -12.67 9.93 84.03 0.83 -11.84 16 24 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 25 C -0.08 -4.58 5.50 84.86 0.47 -4.12 16 26 N -0.97 -60.69 13.06 21.65 0.28 -60.41 16 27 Si 0.97 46.81 29.55 68.60 2.03 48.84 16 28 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 29 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 30 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 31 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.06 1.72 6.70 -2.39 -0.02 1.70 16 33 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 34 H 0.05 2.03 7.22 -2.39 -0.02 2.01 16 35 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.09 2.92 5.72 -2.39 -0.01 2.90 16 37 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 38 H 0.14 3.20 7.66 -2.91 -0.02 3.18 16 39 H 0.17 1.62 6.25 -2.91 -0.02 1.60 16 40 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 41 H 0.09 0.07 7.92 -2.39 -0.02 0.06 16 42 H 0.07 0.30 6.23 -2.39 -0.01 0.28 16 43 H 0.06 0.35 7.95 -2.39 -0.02 0.33 16 44 H 0.10 0.08 7.79 -2.39 -0.02 0.06 16 45 H 0.07 0.31 7.95 -2.39 -0.02 0.29 16 46 H 0.18 2.36 6.74 -2.91 -0.02 2.34 16 47 H 0.15 4.45 4.04 -65.25 -0.26 4.19 16 48 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 49 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 50 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 51 H 0.37 20.85 7.51 -92.71 -0.70 20.15 16 52 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -74.06 404.83 3.11 -70.95 By element: Atomic # 1 Polarization: 36.32 SS G_CDS: -0.02 Total: 36.29 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: 8.39 Total: 7.47 kcal Atomic # 7 Polarization: -134.04 SS G_CDS: -7.22 Total: -141.26 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.06 Total: -22.28 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -74.06 3.11 -70.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037990414.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.337 kcal (2) G-P(sol) polarization free energy of solvation -74.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds