Wall clock time and date at job start Wed Apr 1 2020 06:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47132 * 2 1 4 4 H 1.09002 * 109.52145 * 305.08100 * 3 2 1 5 5 C 1.53196 * 109.50041 * 65.16046 * 3 2 1 6 6 N 1.46918 * 108.77520 * 174.58722 * 5 3 2 7 7 C 1.34781 * 120.63118 * 126.42043 * 6 5 3 8 8 O 1.21604 * 119.99390 * 352.82938 * 7 6 5 9 9 C 1.47409 * 120.00192 * 172.84093 * 7 6 5 10 10 N 1.31870 * 125.93494 * 353.86932 * 9 7 6 11 11 C 1.33368 * 109.15669 * 179.97438 * 10 9 7 12 12 C 1.34867 * 108.15793 * 359.97438 * 11 10 9 13 13 N 1.35678 * 107.37146 * 359.81049 * 12 11 10 14 14 C 1.46453 * 124.57306 * 179.43458 * 13 12 11 15 15 C 1.53279 * 108.82148 * 343.34876 * 14 13 12 16 16 C 1.53137 * 109.60807 * 50.27775 * 15 14 13 17 17 C 1.50765 * 128.32809 * 180.02562 * 12 11 10 18 18 C 1.46933 * 118.73900 * 306.39016 * 6 5 3 19 19 C 1.53183 * 108.77425 * 53.61256 * 18 6 5 20 20 C 1.53038 * 109.31473 * 305.36413 * 19 18 6 21 21 H 1.08996 * 109.46690 * 181.37211 * 20 19 18 22 22 N 1.46505 * 109.46016 * 301.34547 * 20 19 18 23 23 C 1.36932 * 119.99758 * 275.00171 * 22 20 19 24 24 H 1.08001 * 120.00753 * 359.97438 * 23 22 20 25 25 C 1.38822 * 119.99806 * 179.97438 * 23 22 20 26 26 N 1.31618 * 120.00055 * 179.97438 * 25 23 22 27 27 Si 1.86803 * 119.99722 * 359.97438 * 25 23 22 28 28 H 1.48504 * 109.46842 * 90.00165 * 27 25 23 29 29 H 1.48496 * 109.47343 * 329.99882 * 27 25 23 30 30 H 1.48498 * 109.46655 * 209.99893 * 27 25 23 31 31 H 1.08999 * 109.47109 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46864 * 300.00272 * 1 2 3 33 33 H 1.08999 * 109.47087 * 59.99682 * 1 2 3 34 34 H 1.08995 * 109.47317 * 239.99830 * 2 1 3 35 35 H 1.08998 * 109.47433 * 119.99905 * 2 1 3 36 36 H 1.09008 * 109.58260 * 54.79875 * 5 3 2 37 37 H 1.08993 * 109.70340 * 294.44766 * 5 3 2 38 38 H 1.08006 * 125.92295 * 179.97438 * 11 10 9 39 39 H 1.09004 * 109.74576 * 223.43486 * 14 13 12 40 40 H 1.09000 * 109.48537 * 103.11010 * 14 13 12 41 41 H 1.09001 * 109.44725 * 290.23708 * 15 14 13 42 42 H 1.09001 * 109.42802 * 170.30919 * 15 14 13 43 43 H 1.09002 * 109.51034 * 170.59188 * 16 15 14 44 44 H 1.09006 * 109.50784 * 50.45602 * 16 15 14 45 45 H 1.08999 * 109.72671 * 283.92044 * 17 12 11 46 46 H 1.09003 * 109.73131 * 44.55398 * 17 12 11 47 47 H 1.08998 * 109.58634 * 293.82038 * 18 6 5 48 48 H 1.08997 * 109.58315 * 173.40282 * 18 6 5 49 49 H 1.09000 * 109.49706 * 185.41161 * 19 18 6 50 50 H 1.09001 * 109.52901 * 65.33062 * 19 18 6 51 51 H 0.96998 * 119.99561 * 94.99523 * 22 20 19 52 52 H 0.97000 * 119.99822 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9827 -0.8407 5 6 1.6386 2.1269 1.3105 6 7 2.2451 3.4644 1.3506 7 6 1.4858 4.5565 1.5681 8 8 0.2743 4.4574 1.6035 9 6 2.1239 5.8710 1.7629 10 7 3.4197 6.0954 1.8607 11 6 3.6260 7.4020 2.0305 12 6 2.4269 8.0192 2.0396 13 7 1.4785 7.0643 1.8674 14 6 0.0372 7.3216 1.8301 15 6 -0.2325 8.7108 2.4190 16 6 0.6865 9.7387 1.7527 17 6 2.1330 9.4891 2.2012 18 6 3.6953 3.5888 1.1498 19 6 4.0737 2.8882 -0.1588 20 6 3.5653 1.4451 -0.1258 21 1 3.8544 0.9369 -1.0457 22 7 4.1507 0.7475 1.0218 23 6 5.3879 0.1707 0.9140 24 1 5.9320 0.2295 -0.0171 25 6 5.9430 -0.4899 2.0015 26 7 7.1319 -1.0448 1.8978 27 14 5.0023 -0.5911 3.6122 28 1 4.1584 -1.8131 3.6166 29 1 4.1381 0.6078 3.7570 30 1 5.9626 -0.6486 4.7434 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.8934 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 1.9965 1.5377 2.1549 37 1 0.5535 2.2160 1.3611 38 1 4.5868 7.8827 2.1415 39 1 -0.4868 6.5676 2.4175 40 1 -0.3115 7.2882 0.7979 41 1 -0.0403 8.6937 3.4918 42 1 -1.2725 8.9844 2.2409 43 1 0.3826 10.7434 2.0468 44 1 0.6184 9.6396 0.6693 45 1 2.2490 9.7747 3.2467 46 1 2.8163 10.0711 1.5827 47 1 4.2210 3.1190 1.9811 48 1 3.9670 4.6428 1.0919 49 1 5.1578 2.8894 -0.2719 50 1 3.6197 3.4146 -0.9985 51 1 3.6620 0.6944 1.8580 52 1 7.5195 -1.5066 2.6576 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037992693.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:47 Heat of formation + Delta-G solvation = 41.436220 kcal Electronic energy + Delta-G solvation = -32211.634596 eV Core-core repulsion = 28212.303288 eV Total energy + Delta-G solvation = -3999.331309 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.71533 -39.91278 -37.85050 -37.08018 -34.53060 -33.80494 -33.17058 -31.70517 -31.01068 -29.72286 -29.17621 -28.04442 -25.56013 -24.67171 -23.78253 -23.21247 -22.69537 -22.09145 -20.77101 -20.18117 -19.18551 -18.44569 -17.80237 -16.97597 -16.49533 -16.42235 -15.58253 -15.15400 -14.78696 -14.57304 -14.53075 -14.31000 -14.29028 -14.12871 -14.00403 -13.60376 -13.54554 -13.27883 -13.17115 -13.01318 -12.45070 -12.40278 -12.32576 -11.90049 -11.58224 -11.54340 -11.50119 -11.41984 -11.19823 -11.12130 -10.86624 -10.77663 -10.43105 -10.33343 -10.16046 -10.11512 -9.87232 -9.73412 -9.50667 -9.33386 -8.81267 -8.60321 -8.23005 -7.20047 -5.72708 -3.06947 1.30359 2.28529 2.50298 3.26428 3.39739 3.40812 3.42738 3.48345 4.06572 4.19024 4.27615 4.28054 4.42533 4.62662 4.84814 4.89833 4.97587 5.05219 5.11482 5.15036 5.24058 5.30184 5.31471 5.37254 5.44681 5.46016 5.52229 5.57701 5.59566 5.66225 5.68428 5.77421 5.81423 5.85483 5.99912 6.09612 6.11820 6.21980 6.29438 6.33324 6.42817 6.47579 6.54013 6.68940 6.72584 6.77566 6.81645 6.96291 7.08657 7.52621 7.75266 8.04261 8.21007 8.46611 9.25189 9.98034 10.18259 11.45980 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013902 B = 0.003302 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.565708 B = 8478.579765 C = 9539.309958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.105 4.105 4 H 0.072 0.928 5 C 0.118 3.882 6 N -0.575 5.575 7 C 0.601 3.399 8 O -0.558 6.558 9 C 0.154 3.846 10 N -0.435 5.435 11 C -0.024 4.024 12 C -0.005 4.005 13 N -0.410 5.410 14 C 0.102 3.898 15 C -0.136 4.136 16 C -0.127 4.127 17 C -0.047 4.047 18 C 0.079 3.921 19 C -0.147 4.147 20 C 0.183 3.817 21 H 0.059 0.941 22 N -0.743 5.743 23 C -0.236 4.236 24 H 0.090 0.910 25 C 0.006 3.994 26 N -0.935 5.935 27 Si 0.877 3.123 28 H -0.285 1.285 29 H -0.278 1.278 30 H -0.292 1.292 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.177 0.823 39 H 0.106 0.894 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.089 0.911 43 H 0.078 0.922 44 H 0.069 0.931 45 H 0.085 0.915 46 H 0.091 0.909 47 H 0.075 0.925 48 H 0.135 0.865 49 H 0.079 0.921 50 H 0.047 0.953 51 H 0.359 0.641 52 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.561 21.696 -1.404 26.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.125 4.125 4 H 0.090 0.910 5 C -0.004 4.004 6 N -0.304 5.304 7 C 0.387 3.613 8 O -0.437 6.437 9 C -0.105 4.105 10 N -0.157 5.157 11 C -0.176 4.176 12 C -0.124 4.124 13 N -0.091 5.091 14 C -0.020 4.020 15 C -0.173 4.173 16 C -0.165 4.165 17 C -0.085 4.085 18 C -0.042 4.042 19 C -0.188 4.188 20 C 0.073 3.927 21 H 0.077 0.923 22 N -0.387 5.387 23 C -0.366 4.366 24 H 0.108 0.892 25 C -0.190 4.190 26 N -0.583 5.583 27 Si 0.708 3.292 28 H -0.212 1.212 29 H -0.205 1.205 30 H -0.218 1.218 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.108 0.892 38 H 0.195 0.805 39 H 0.124 0.876 40 H 0.106 0.894 41 H 0.093 0.907 42 H 0.108 0.892 43 H 0.097 0.903 44 H 0.088 0.912 45 H 0.104 0.896 46 H 0.110 0.890 47 H 0.093 0.907 48 H 0.151 0.849 49 H 0.097 0.903 50 H 0.066 0.934 51 H 0.193 0.807 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.572 20.867 -1.527 26.082 hybrid contribution -0.936 0.353 1.338 1.670 sum -16.509 21.220 -0.189 26.886 Atomic orbital electron populations 1.21861 0.96667 1.01142 1.01442 1.21434 0.94421 0.95678 1.03373 1.21796 0.97700 0.96098 0.96923 0.90978 1.21777 0.98964 0.81260 0.98418 1.47848 1.09936 1.05357 1.67284 1.16516 0.85544 0.81632 0.77620 1.90748 1.13067 1.85588 1.54276 1.22542 0.87947 0.87903 1.12094 1.70289 1.12319 1.16494 1.16553 1.22156 0.97389 0.89873 1.08176 1.21300 0.89327 0.92585 1.09214 1.44951 1.07942 1.06123 1.50115 1.22162 0.77220 0.98843 1.03730 1.21949 1.01212 0.93038 1.01148 1.21690 0.94260 0.99453 1.01074 1.20299 0.97230 0.88149 1.02827 1.22781 0.77084 1.05661 0.98672 1.22485 1.02166 0.98190 0.95978 1.20227 0.89224 0.91114 0.92111 0.92317 1.42823 1.19821 1.65727 1.10283 1.19057 0.92207 1.26186 0.99124 0.89172 1.24618 0.96474 1.00462 0.97425 1.69690 1.16350 1.41438 1.30826 0.86667 0.79459 0.77731 0.85362 1.21153 1.20450 1.21815 0.93041 0.92908 0.93123 0.91413 0.91127 0.91284 0.89244 0.80543 0.87594 0.89375 0.90667 0.89233 0.90298 0.91207 0.89628 0.89030 0.90650 0.84851 0.90272 0.93416 0.80679 0.93166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.68 37.16 0.36 -1.62 16 2 C -0.11 -1.70 5.19 -26.73 -0.14 -1.84 16 3 C -0.11 -1.70 2.14 -90.50 -0.19 -1.89 16 4 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 5 C 0.12 1.97 5.04 -3.71 -0.02 1.95 16 6 N -0.57 -9.92 2.97 -174.05 -0.52 -10.44 16 7 C 0.60 10.23 7.67 -12.52 -0.10 10.14 16 8 O -0.56 -9.90 14.63 5.27 0.08 -9.82 16 9 C 0.15 2.38 7.54 -154.87 -1.17 1.22 16 10 N -0.44 -6.69 7.67 -11.45 -0.09 -6.78 16 11 C -0.02 -0.29 11.82 -18.08 -0.21 -0.50 16 12 C -0.01 -0.05 6.57 -82.06 -0.54 -0.59 16 13 N -0.41 -5.06 3.14 -110.07 -0.35 -5.41 16 14 C 0.10 0.98 6.17 -3.92 -0.02 0.95 16 15 C -0.14 -0.83 5.93 -26.52 -0.16 -0.99 16 16 C -0.13 -0.68 5.96 -26.41 -0.16 -0.83 16 17 C -0.05 -0.29 6.31 -27.60 -0.17 -0.47 16 18 C 0.08 1.42 5.84 -3.71 -0.02 1.40 16 19 C -0.15 -2.62 5.78 -26.62 -0.15 -2.77 16 20 C 0.18 3.45 2.53 -67.89 -0.17 3.28 16 21 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 22 N -0.74 -16.85 3.52 -53.38 -0.19 -17.04 16 23 C -0.24 -6.44 10.41 -15.06 -0.16 -6.59 16 24 H 0.09 2.65 8.06 -52.49 -0.42 2.22 16 25 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 26 N -0.93 -29.21 13.97 55.49 0.78 -28.44 16 27 Si 0.88 22.23 27.73 -169.99 -4.71 17.52 16 28 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 29 H -0.28 -6.73 6.52 56.52 0.37 -6.37 16 30 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.67 6.70 -51.93 -0.35 0.32 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.07 1.21 7.70 -51.93 -0.40 0.82 16 36 H 0.07 1.25 6.64 -51.92 -0.34 0.90 16 37 H 0.09 1.44 5.72 -51.93 -0.30 1.15 16 38 H 0.18 1.64 8.06 -52.48 -0.42 1.21 16 39 H 0.11 1.14 7.16 -51.93 -0.37 0.77 16 40 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 42 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 45 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.08 1.55 7.74 -51.93 -0.40 1.14 16 48 H 0.13 2.32 4.13 -62.63 -0.26 2.06 16 49 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 50 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 51 H 0.36 8.22 3.81 -40.82 -0.16 8.06 16 52 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 392.35 15.07 5.91 5.91 Total: -1.00 -32.95 392.35 -10.71 -43.67 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -8.51 Total: 9.92 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: -3.12 Total: 0.91 kcal Atomic # 7 Polarization: -67.73 SS G_CDS: -0.36 Total: -68.10 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.08 Total: -9.82 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.71 Total: 17.52 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.95 -10.71 -43.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037992693.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.103 kcal (2) G-P(sol) polarization free energy of solvation -32.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds