Wall clock time and date at job start Wed Apr 1 2020 06:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47347 * 2 1 4 4 H 1.08994 * 109.52220 * 54.91800 * 3 2 1 5 5 C 1.53189 * 109.49865 * 294.83587 * 3 2 1 6 6 N 1.46923 * 108.77913 * 185.41002 * 5 3 2 7 7 C 1.34767 * 120.63535 * 233.58841 * 6 5 3 8 8 O 1.21604 * 120.00147 * 354.97535 * 7 6 5 9 9 C 1.47412 * 120.00245 * 174.97680 * 7 6 5 10 10 N 1.31876 * 125.93226 * 5.52479 * 9 7 6 11 11 C 1.33378 * 109.15230 * 179.84371 * 10 9 7 12 12 C 1.34868 * 108.15687 * 0.38935 * 11 10 9 13 13 N 1.35677 * 107.37341 * 359.80210 * 12 11 10 14 14 C 1.46450 * 124.57651 * 179.88912 * 13 12 11 15 15 C 1.53283 * 108.75610 * 342.81661 * 14 13 12 16 16 C 1.53144 * 109.61551 * 50.49180 * 15 14 13 17 17 C 1.50763 * 128.32181 * 179.84642 * 12 11 10 18 18 C 1.46930 * 118.73366 * 53.60974 * 6 5 3 19 19 C 1.53160 * 108.77228 * 306.39289 * 18 6 5 20 20 C 1.53038 * 109.32706 * 54.63968 * 19 18 6 21 21 H 1.09001 * 109.45936 * 178.61753 * 20 19 18 22 22 N 1.46504 * 109.45578 * 58.64937 * 20 19 18 23 23 C 1.36928 * 120.00304 * 84.97118 * 22 20 19 24 24 H 1.08004 * 120.00184 * 0.02562 * 23 22 20 25 25 C 1.38811 * 120.00239 * 179.97438 * 23 22 20 26 26 N 1.31617 * 119.99832 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 120.00268 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.47397 * 180.02562 * 27 25 23 29 29 H 1.48505 * 109.46853 * 300.00130 * 27 25 23 30 30 H 1.48499 * 109.47237 * 60.00137 * 27 25 23 31 31 H 1.09002 * 109.47378 * 300.00257 * 1 2 3 32 32 H 1.09003 * 109.47006 * 60.00130 * 1 2 3 33 33 H 1.09003 * 109.47599 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47378 * 239.99742 * 2 1 3 35 35 H 1.09000 * 109.47272 * 120.00320 * 2 1 3 36 36 H 1.09003 * 109.59024 * 305.20160 * 5 3 2 37 37 H 1.09004 * 109.58476 * 65.62682 * 5 3 2 38 38 H 1.08001 * 125.91996 * 180.17500 * 11 10 9 39 39 H 1.09005 * 109.58722 * 102.59924 * 14 13 12 40 40 H 1.08997 * 109.59032 * 223.03886 * 14 13 12 41 41 H 1.09000 * 109.44676 * 290.44188 * 15 14 13 42 42 H 1.08998 * 109.41825 * 170.51571 * 15 14 13 43 43 H 1.09002 * 109.50636 * 170.60141 * 16 15 14 44 44 H 1.08998 * 109.55035 * 50.47772 * 16 15 14 45 45 H 1.08995 * 109.73260 * 283.81621 * 17 12 11 46 46 H 1.09000 * 109.73276 * 44.45903 * 17 12 11 47 47 H 1.09009 * 109.58590 * 66.18221 * 18 6 5 48 48 H 1.09003 * 109.58694 * 186.45783 * 18 6 5 49 49 H 1.09005 * 109.49826 * 294.68088 * 19 18 6 50 50 H 1.08994 * 109.48010 * 174.59463 * 19 18 6 51 51 H 0.97002 * 119.99964 * 264.96344 * 22 20 19 52 52 H 0.97006 * 120.00282 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6048 1.9827 0.8407 5 6 1.6386 2.1267 -1.3105 6 7 2.2452 3.4643 -1.3507 7 6 1.4859 4.5563 -1.5682 8 8 0.3035 4.4337 -1.8240 9 6 2.0889 5.8996 -1.4959 10 7 3.3700 6.1649 -1.3302 11 6 3.5449 7.4871 -1.3172 12 6 2.3394 8.0720 -1.4705 13 7 1.4196 7.0810 -1.5827 14 6 -0.0177 7.2975 -1.7615 15 6 -0.3505 8.7427 -1.3737 16 6 0.6008 9.7009 -2.0963 17 6 2.0134 9.5433 -1.5174 18 6 3.6953 3.5886 -1.1498 19 6 4.0735 2.8881 0.1586 20 6 3.5652 1.4450 0.1258 21 1 3.8546 0.9370 1.0458 22 7 4.1508 0.7474 -1.0218 23 6 5.3883 0.1712 -0.9142 24 1 5.9326 0.2305 0.0167 25 6 5.9428 -0.4902 -2.0014 26 7 5.2794 -0.5630 -3.1358 27 14 7.6307 -1.2769 -1.8544 28 1 7.9938 -1.9147 -3.1454 29 1 8.6345 -0.2356 -1.5178 30 1 7.6060 -2.3053 -0.7834 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 1.9966 1.5376 -2.1549 37 1 0.5533 2.2161 -1.3585 38 1 4.4880 8.0003 -1.2002 39 1 -0.2858 7.1280 -2.8044 40 1 -0.5730 6.6107 -1.1228 41 1 -0.2388 8.8642 -0.2963 42 1 -1.3780 8.9672 -1.6597 43 1 0.2614 10.7269 -1.9539 44 1 0.6154 9.4667 -3.1608 45 1 2.0473 9.9599 -0.5108 46 1 2.7323 10.0594 -2.1537 47 1 4.2210 3.1188 -1.9811 48 1 3.9675 4.6427 -1.0944 49 1 3.6191 3.4148 0.9979 50 1 5.1576 2.8896 0.2716 51 1 3.6618 0.6936 -1.8578 52 1 5.6667 -1.0255 -3.8954 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037992697.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:51 Heat of formation + Delta-G solvation = 39.400884 kcal Electronic energy + Delta-G solvation = -32097.512142 eV Core-core repulsion = 28098.092575 eV Total energy + Delta-G solvation = -3999.419567 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.66456 -39.74787 -37.68435 -37.03615 -34.37735 -33.66819 -33.11943 -31.59939 -30.96880 -29.28182 -28.92570 -27.87314 -25.39978 -24.60093 -23.65497 -23.43272 -22.66687 -22.04252 -20.66703 -20.09433 -19.13376 -18.33056 -17.24350 -16.91950 -16.45114 -16.25878 -15.43065 -15.09171 -14.67055 -14.55976 -14.42611 -14.35266 -14.15639 -14.02355 -13.84943 -13.56881 -13.50487 -13.19167 -12.95100 -12.89372 -12.45881 -12.27995 -12.12114 -11.77784 -11.51527 -11.45021 -11.37076 -11.33280 -11.04327 -10.95170 -10.75547 -10.64898 -10.31164 -10.22147 -10.13647 -10.00179 -9.79180 -9.69286 -9.46678 -9.13553 -8.69860 -8.53631 -8.07345 -6.86955 -5.70353 -2.97840 1.38259 2.35184 2.56969 3.39049 3.48008 3.51309 3.52888 3.53313 4.11273 4.23321 4.32181 4.36801 4.47928 4.65123 4.90772 4.96333 5.01443 5.11642 5.24199 5.28035 5.34789 5.36200 5.40835 5.44940 5.49957 5.56559 5.64841 5.71779 5.72847 5.79068 5.81907 5.93795 5.96741 6.01116 6.17593 6.19604 6.27576 6.37462 6.43414 6.44677 6.55783 6.63688 6.71252 6.76974 6.84727 6.92250 7.01797 7.12002 7.29717 7.64939 7.76330 7.87658 8.34176 8.48349 9.59657 10.17592 10.52764 11.52273 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014170 B = 0.003080 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.513379 B = 9087.588494 C =10416.252669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.102 4.102 4 H 0.065 0.935 5 C 0.119 3.881 6 N -0.569 5.569 7 C 0.597 3.403 8 O -0.560 6.560 9 C 0.161 3.839 10 N -0.436 5.436 11 C -0.024 4.024 12 C -0.007 4.007 13 N -0.410 5.410 14 C 0.104 3.896 15 C -0.136 4.136 16 C -0.127 4.127 17 C -0.046 4.046 18 C 0.061 3.939 19 C -0.143 4.143 20 C 0.176 3.824 21 H 0.048 0.952 22 N -0.718 5.718 23 C -0.233 4.233 24 H 0.068 0.932 25 C -0.013 4.013 26 N -0.934 5.934 27 Si 0.904 3.096 28 H -0.293 1.293 29 H -0.287 1.287 30 H -0.288 1.288 31 H 0.046 0.954 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.177 0.823 39 H 0.090 0.910 40 H 0.103 0.897 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.078 0.922 44 H 0.069 0.931 45 H 0.085 0.915 46 H 0.091 0.909 47 H 0.077 0.923 48 H 0.150 0.850 49 H 0.043 0.957 50 H 0.072 0.928 51 H 0.383 0.617 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.682 20.581 4.875 24.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.122 4.122 4 H 0.083 0.917 5 C -0.003 4.003 6 N -0.298 5.298 7 C 0.383 3.617 8 O -0.439 6.439 9 C -0.098 4.098 10 N -0.157 5.157 11 C -0.176 4.176 12 C -0.126 4.126 13 N -0.091 5.091 14 C -0.017 4.017 15 C -0.173 4.173 16 C -0.165 4.165 17 C -0.084 4.084 18 C -0.061 4.061 19 C -0.184 4.184 20 C 0.066 3.934 21 H 0.066 0.934 22 N -0.360 5.360 23 C -0.364 4.364 24 H 0.086 0.914 25 C -0.209 4.209 26 N -0.582 5.582 27 Si 0.735 3.265 28 H -0.219 1.219 29 H -0.214 1.214 30 H -0.215 1.215 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.194 0.806 39 H 0.108 0.892 40 H 0.121 0.879 41 H 0.093 0.907 42 H 0.108 0.892 43 H 0.097 0.903 44 H 0.088 0.912 45 H 0.103 0.897 46 H 0.109 0.891 47 H 0.095 0.905 48 H 0.166 0.834 49 H 0.061 0.939 50 H 0.090 0.910 51 H 0.218 0.782 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.729 19.766 4.830 23.486 hybrid contribution 0.430 -0.041 -0.333 0.546 sum -11.299 19.725 4.497 23.172 Atomic orbital electron populations 1.21857 0.96907 1.01007 1.01268 1.21418 0.94167 0.95758 1.03441 1.21739 0.97736 0.95994 0.96704 0.91694 1.21781 0.98536 0.81253 0.98691 1.47842 1.09833 1.05278 1.66841 1.16529 0.85205 0.81759 0.78221 1.90753 1.15378 1.86230 1.51560 1.22623 0.87861 0.88100 1.11253 1.69981 1.13181 1.15039 1.17493 1.22166 0.97247 0.89959 1.08205 1.21267 0.89860 0.91852 1.09640 1.44939 1.08497 1.05486 1.50185 1.22141 0.77260 0.98280 1.04060 1.21953 1.00834 0.92826 1.01729 1.21688 0.94366 1.00034 1.00414 1.20285 0.97389 0.88236 1.02534 1.23149 0.77074 1.07134 0.98707 1.22434 1.01541 0.98385 0.96054 1.20270 0.89511 0.91200 0.92424 0.93388 1.42444 1.19052 1.63934 1.10580 1.19172 0.93684 1.26602 0.96992 0.91366 1.24684 0.98489 1.01672 0.96039 1.69641 1.38167 1.48197 1.02235 0.86318 0.84556 0.79156 0.76442 1.21893 1.21380 1.21472 0.93442 0.92819 0.93165 0.90429 0.91978 0.90386 0.89696 0.80603 0.89159 0.87905 0.90701 0.89244 0.90335 0.91183 0.89689 0.89077 0.90502 0.83428 0.93852 0.90967 0.78175 0.93588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.67 37.16 0.36 -1.77 16 2 C -0.11 -1.82 5.19 -26.73 -0.14 -1.96 16 3 C -0.10 -1.75 2.14 -90.50 -0.19 -1.95 16 4 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 5 C 0.12 2.14 5.02 -3.71 -0.02 2.12 16 6 N -0.57 -10.36 2.97 -174.06 -0.52 -10.88 16 7 C 0.60 10.68 7.68 -12.53 -0.10 10.58 16 8 O -0.56 -10.48 14.77 5.27 0.08 -10.40 16 9 C 0.16 2.57 7.61 -154.86 -1.18 1.40 16 10 N -0.44 -6.84 7.53 -11.44 -0.09 -6.93 16 11 C -0.02 -0.30 11.82 -18.08 -0.21 -0.51 16 12 C -0.01 -0.08 6.57 -82.06 -0.54 -0.62 16 13 N -0.41 -5.23 3.14 -110.07 -0.35 -5.58 16 14 C 0.10 1.04 6.05 -3.92 -0.02 1.02 16 15 C -0.14 -0.87 5.93 -26.51 -0.16 -1.02 16 16 C -0.13 -0.72 5.96 -26.41 -0.16 -0.88 16 17 C -0.05 -0.30 6.31 -27.60 -0.17 -0.48 16 18 C 0.06 1.15 6.07 -3.72 -0.02 1.12 16 19 C -0.14 -2.67 5.78 -26.63 -0.15 -2.82 16 20 C 0.18 3.49 2.53 -67.89 -0.17 3.32 16 21 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 22 N -0.72 -17.24 3.72 -53.38 -0.20 -17.44 16 23 C -0.23 -6.30 9.93 -15.06 -0.15 -6.45 16 24 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 25 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 26 N -0.93 -27.88 13.06 55.49 0.72 -27.16 16 27 Si 0.90 22.40 29.55 -169.99 -5.02 17.38 16 28 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 29 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 30 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.75 6.70 -51.93 -0.35 0.40 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 1.48 7.70 -51.93 -0.40 1.08 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.08 1.55 6.64 -51.93 -0.34 1.21 16 37 H 0.08 1.48 5.76 -51.93 -0.30 1.18 16 38 H 0.18 1.65 8.06 -52.49 -0.42 1.22 16 39 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.10 1.13 7.42 -51.93 -0.39 0.74 16 41 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 42 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 45 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.08 1.69 7.74 -51.92 -0.40 1.29 16 48 H 0.15 2.68 3.65 -81.97 -0.30 2.38 16 49 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 51 H 0.38 9.86 5.94 -40.82 -0.24 9.62 16 52 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 395.42 15.07 5.96 5.96 Total: -1.00 -31.85 395.42 -11.14 -42.99 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -8.60 Total: 11.40 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -3.12 Total: 0.65 kcal Atomic # 7 Polarization: -67.56 SS G_CDS: -0.42 Total: -67.98 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.08 Total: -10.40 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.85 -11.14 -42.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037992697.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.390 kcal (2) G-P(sol) polarization free energy of solvation -31.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds