Wall clock time and date at job start Wed Apr 1 2020 06:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47347 * 2 1 4 4 H 1.08994 * 109.52220 * 54.91800 * 3 2 1 5 5 C 1.53189 * 109.49865 * 294.83587 * 3 2 1 6 6 N 1.46923 * 108.77913 * 185.41002 * 5 3 2 7 7 C 1.34767 * 120.63535 * 233.58841 * 6 5 3 8 8 O 1.21604 * 120.00147 * 354.97535 * 7 6 5 9 9 C 1.47412 * 120.00245 * 174.97680 * 7 6 5 10 10 N 1.31876 * 125.93226 * 5.52479 * 9 7 6 11 11 C 1.33378 * 109.15230 * 179.84371 * 10 9 7 12 12 C 1.34868 * 108.15687 * 0.38935 * 11 10 9 13 13 N 1.35677 * 107.37341 * 359.80210 * 12 11 10 14 14 C 1.46450 * 124.57651 * 179.88912 * 13 12 11 15 15 C 1.53283 * 108.75610 * 342.81661 * 14 13 12 16 16 C 1.53144 * 109.61551 * 50.49180 * 15 14 13 17 17 C 1.50763 * 128.32181 * 179.84642 * 12 11 10 18 18 C 1.46930 * 118.73366 * 53.60974 * 6 5 3 19 19 C 1.53160 * 108.77228 * 306.39289 * 18 6 5 20 20 C 1.53038 * 109.32706 * 54.63968 * 19 18 6 21 21 H 1.09001 * 109.45936 * 178.61753 * 20 19 18 22 22 N 1.46504 * 109.45578 * 58.64937 * 20 19 18 23 23 C 1.36928 * 120.00304 * 84.97118 * 22 20 19 24 24 H 1.08004 * 120.00184 * 0.02562 * 23 22 20 25 25 C 1.38811 * 120.00239 * 179.97438 * 23 22 20 26 26 N 1.31617 * 119.99832 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 120.00268 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.47397 * 180.02562 * 27 25 23 29 29 H 1.48505 * 109.46853 * 300.00130 * 27 25 23 30 30 H 1.48499 * 109.47237 * 60.00137 * 27 25 23 31 31 H 1.09002 * 109.47378 * 300.00257 * 1 2 3 32 32 H 1.09003 * 109.47006 * 60.00130 * 1 2 3 33 33 H 1.09003 * 109.47599 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47378 * 239.99742 * 2 1 3 35 35 H 1.09000 * 109.47272 * 120.00320 * 2 1 3 36 36 H 1.09003 * 109.59024 * 305.20160 * 5 3 2 37 37 H 1.09004 * 109.58476 * 65.62682 * 5 3 2 38 38 H 1.08001 * 125.91996 * 180.17500 * 11 10 9 39 39 H 1.09005 * 109.58722 * 102.59924 * 14 13 12 40 40 H 1.08997 * 109.59032 * 223.03886 * 14 13 12 41 41 H 1.09000 * 109.44676 * 290.44188 * 15 14 13 42 42 H 1.08998 * 109.41825 * 170.51571 * 15 14 13 43 43 H 1.09002 * 109.50636 * 170.60141 * 16 15 14 44 44 H 1.08998 * 109.55035 * 50.47772 * 16 15 14 45 45 H 1.08995 * 109.73260 * 283.81621 * 17 12 11 46 46 H 1.09000 * 109.73276 * 44.45903 * 17 12 11 47 47 H 1.09009 * 109.58590 * 66.18221 * 18 6 5 48 48 H 1.09003 * 109.58694 * 186.45783 * 18 6 5 49 49 H 1.09005 * 109.49826 * 294.68088 * 19 18 6 50 50 H 1.08994 * 109.48010 * 174.59463 * 19 18 6 51 51 H 0.97002 * 119.99964 * 264.96344 * 22 20 19 52 52 H 0.97006 * 120.00282 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6048 1.9827 0.8407 5 6 1.6386 2.1267 -1.3105 6 7 2.2452 3.4643 -1.3507 7 6 1.4859 4.5563 -1.5682 8 8 0.3035 4.4337 -1.8240 9 6 2.0889 5.8996 -1.4959 10 7 3.3700 6.1649 -1.3302 11 6 3.5449 7.4871 -1.3172 12 6 2.3394 8.0720 -1.4705 13 7 1.4196 7.0810 -1.5827 14 6 -0.0177 7.2975 -1.7615 15 6 -0.3505 8.7427 -1.3737 16 6 0.6008 9.7009 -2.0963 17 6 2.0134 9.5433 -1.5174 18 6 3.6953 3.5886 -1.1498 19 6 4.0735 2.8881 0.1586 20 6 3.5652 1.4450 0.1258 21 1 3.8546 0.9370 1.0458 22 7 4.1508 0.7474 -1.0218 23 6 5.3883 0.1712 -0.9142 24 1 5.9326 0.2305 0.0167 25 6 5.9428 -0.4902 -2.0014 26 7 5.2794 -0.5630 -3.1358 27 14 7.6307 -1.2769 -1.8544 28 1 7.9938 -1.9147 -3.1454 29 1 8.6345 -0.2356 -1.5178 30 1 7.6060 -2.3053 -0.7834 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 1.9966 1.5376 -2.1549 37 1 0.5533 2.2161 -1.3585 38 1 4.4880 8.0003 -1.2002 39 1 -0.2858 7.1280 -2.8044 40 1 -0.5730 6.6107 -1.1228 41 1 -0.2388 8.8642 -0.2963 42 1 -1.3780 8.9672 -1.6597 43 1 0.2614 10.7269 -1.9539 44 1 0.6154 9.4667 -3.1608 45 1 2.0473 9.9599 -0.5108 46 1 2.7323 10.0594 -2.1537 47 1 4.2210 3.1188 -1.9811 48 1 3.9675 4.6427 -1.0944 49 1 3.6191 3.4148 0.9979 50 1 5.1576 2.8896 0.2716 51 1 3.6618 0.6936 -1.8578 52 1 5.6667 -1.0255 -3.8954 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037992697.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:50 Heat of formation + Delta-G solvation = 22.106431 kcal Electronic energy + Delta-G solvation = -32098.262086 eV Core-core repulsion = 28098.092575 eV Total energy + Delta-G solvation = -4000.169511 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -43.65624 -41.18830 -39.18195 -37.77556 -35.90796 -35.34355 -33.93507 -33.41415 -31.87650 -30.97922 -30.23287 -29.02036 -26.74900 -25.60922 -25.31776 -24.93523 -23.78314 -22.90651 -22.11784 -21.23337 -20.03866 -19.78323 -19.25599 -18.16959 -17.73616 -17.28740 -16.71793 -16.56093 -16.09755 -15.93450 -15.61918 -15.31158 -15.16087 -15.02625 -14.87983 -14.80658 -14.77467 -14.58869 -14.35760 -14.24041 -14.01471 -13.60397 -13.14235 -13.04050 -12.92704 -12.81338 -12.66487 -12.40108 -12.31085 -12.15727 -12.07120 -11.90784 -11.88864 -11.84434 -11.60926 -11.46562 -11.31860 -11.14925 -10.93153 -10.78080 -10.23136 -9.75806 -9.33076 -8.90233 -7.87367 -5.13635 0.25607 1.32321 1.48733 1.51116 1.53514 1.56679 2.16118 2.27259 2.60534 3.12733 3.46037 3.49497 3.55985 3.75001 3.78073 3.84936 3.86607 4.05148 4.09594 4.11735 4.25393 4.34081 4.41684 4.42733 4.44093 4.48637 4.53393 4.61163 4.63933 4.67138 4.83735 4.85623 4.87692 4.96768 4.98032 5.04703 5.08849 5.11098 5.16301 5.17926 5.24266 5.29069 5.32183 5.37600 5.44092 5.50905 5.60137 5.61629 5.83732 6.00807 6.28682 6.33989 6.68431 7.01404 7.41001 8.17360 8.41655 9.36020 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014170 B = 0.003080 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.513379 B = 9087.588494 C =10416.252669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.104 4.104 3 C -0.090 4.090 4 H 0.084 0.916 5 C 0.126 3.874 6 N -0.576 5.576 7 C 0.596 3.404 8 O -0.575 6.575 9 C 0.115 3.885 10 N -0.458 5.458 11 C -0.043 4.043 12 C 0.016 3.984 13 N -0.407 5.407 14 C 0.096 3.904 15 C -0.127 4.127 16 C -0.125 4.125 17 C -0.046 4.046 18 C 0.073 3.927 19 C -0.134 4.134 20 C 0.171 3.829 21 H 0.048 0.952 22 N -0.723 5.723 23 C -0.227 4.227 24 H 0.074 0.926 25 C -0.075 4.075 26 N -0.971 5.971 27 Si 0.966 3.034 28 H -0.301 1.301 29 H -0.280 1.280 30 H -0.280 1.280 31 H 0.064 0.936 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.044 0.956 35 H 0.064 0.936 36 H 0.049 0.951 37 H 0.092 0.908 38 H 0.204 0.796 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.111 0.889 43 H 0.108 0.892 44 H 0.062 0.938 45 H 0.107 0.893 46 H 0.112 0.888 47 H 0.036 0.964 48 H 0.162 0.838 49 H 0.065 0.935 50 H 0.060 0.940 51 H 0.372 0.628 52 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.407 23.742 6.559 27.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C -0.110 4.110 4 H 0.102 0.898 5 C 0.004 3.996 6 N -0.305 5.305 7 C 0.384 3.616 8 O -0.456 6.456 9 C -0.142 4.142 10 N -0.180 5.180 11 C -0.195 4.195 12 C -0.104 4.104 13 N -0.088 5.088 14 C -0.025 4.025 15 C -0.165 4.165 16 C -0.163 4.163 17 C -0.084 4.084 18 C -0.049 4.049 19 C -0.175 4.175 20 C 0.063 3.937 21 H 0.066 0.934 22 N -0.364 5.364 23 C -0.359 4.359 24 H 0.092 0.908 25 C -0.267 4.267 26 N -0.622 5.622 27 Si 0.797 3.203 28 H -0.227 1.227 29 H -0.207 1.207 30 H -0.206 1.206 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.110 0.890 38 H 0.221 0.779 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.097 0.903 42 H 0.130 0.870 43 H 0.126 0.874 44 H 0.081 0.919 45 H 0.125 0.875 46 H 0.130 0.870 47 H 0.054 0.946 48 H 0.178 0.822 49 H 0.083 0.917 50 H 0.079 0.921 51 H 0.205 0.795 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -12.481 22.937 6.560 26.924 hybrid contribution 0.607 -0.853 -0.833 1.338 sum -11.874 22.084 5.726 25.719 Atomic orbital electron populations 1.21786 0.94473 1.02075 1.01922 1.21336 0.96270 0.94764 1.01882 1.21646 0.95790 0.96690 0.96852 0.89751 1.21641 0.98714 0.81217 0.98037 1.47821 1.09518 1.05566 1.67580 1.16788 0.85035 0.82493 0.77316 1.90720 1.15957 1.86727 1.52171 1.22133 0.88536 0.88177 1.15370 1.69681 1.13382 1.17262 1.17682 1.22733 0.99180 0.88859 1.08685 1.22080 0.88871 0.93609 1.05882 1.45166 1.09694 1.04906 1.49017 1.22364 0.75738 1.00775 1.03598 1.21981 1.02374 0.90103 1.02046 1.21723 0.93496 1.01342 0.99705 1.20571 0.98546 0.84867 1.04420 1.22995 0.77289 1.07524 0.97095 1.22305 1.00868 0.97565 0.96715 1.20476 0.91208 0.91344 0.90722 0.93435 1.42552 1.18354 1.64155 1.11349 1.19542 0.94433 1.25109 0.96826 0.90784 1.25423 1.02010 1.03305 0.95998 1.69813 1.39726 1.49804 1.02860 0.85309 0.80703 0.78359 0.75978 1.22747 1.20671 1.20619 0.91705 0.93154 0.91964 0.93689 0.91746 0.93250 0.88993 0.77930 0.89590 0.89396 0.90316 0.87026 0.87373 0.91884 0.87511 0.86970 0.94594 0.82210 0.91674 0.92096 0.79452 0.94410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.90 9.67 71.98 0.70 -3.21 16 2 C -0.10 -3.48 5.19 30.59 0.16 -3.33 16 3 C -0.09 -3.12 2.14 -10.72 -0.02 -3.15 16 4 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 5 C 0.13 4.71 5.02 86.36 0.43 5.14 16 6 N -0.58 -21.77 2.97 -822.85 -2.45 -24.22 16 7 C 0.60 21.92 7.68 86.66 0.67 22.59 16 8 O -0.57 -22.08 14.77 -4.04 -0.06 -22.14 16 9 C 0.11 3.70 7.61 136.40 1.04 4.73 16 10 N -0.46 -14.32 7.53 -190.12 -1.43 -15.75 16 11 C -0.04 -0.99 11.82 83.68 0.99 0.00 16 12 C 0.02 0.31 6.57 41.21 0.27 0.58 16 13 N -0.41 -9.98 3.14 -502.14 -1.58 -11.56 16 14 C 0.10 1.82 6.05 86.48 0.52 2.35 16 15 C -0.13 -1.23 5.93 30.74 0.18 -1.04 16 16 C -0.13 -0.90 5.96 30.80 0.18 -0.71 16 17 C -0.05 -0.41 6.31 30.03 0.19 -0.22 16 18 C 0.07 2.86 6.07 86.35 0.52 3.38 16 19 C -0.13 -5.04 5.78 30.66 0.18 -4.86 16 20 C 0.17 6.90 2.53 45.02 0.11 7.01 16 21 H 0.05 1.93 8.08 -2.39 -0.02 1.91 16 22 N -0.72 -36.13 3.72 -322.81 -1.20 -37.33 16 23 C -0.23 -12.54 9.93 84.03 0.83 -11.70 16 24 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 25 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 26 N -0.97 -60.32 13.06 21.65 0.28 -60.03 16 27 Si 0.97 47.04 29.55 68.60 2.03 49.06 16 28 H -0.30 -14.92 7.11 99.48 0.71 -14.22 16 29 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 30 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 31 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.05 1.38 6.70 -2.39 -0.02 1.36 16 33 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.04 1.80 7.70 -2.39 -0.02 1.78 16 35 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.05 2.12 6.64 -2.39 -0.02 2.10 16 37 H 0.09 3.28 5.76 -2.39 -0.01 3.27 16 38 H 0.20 3.29 8.06 -2.91 -0.02 3.26 16 39 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 40 H 0.09 1.92 7.42 -2.39 -0.02 1.91 16 41 H 0.08 0.74 8.12 -2.39 -0.02 0.72 16 42 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 44 H 0.06 0.58 8.12 -2.39 -0.02 0.56 16 45 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.04 1.68 7.74 -2.38 -0.02 1.66 16 48 H 0.16 5.99 3.65 -61.70 -0.22 5.76 16 49 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 50 H 0.06 2.41 8.14 -2.39 -0.02 2.40 16 51 H 0.37 20.30 5.94 -92.71 -0.55 19.75 16 52 H 0.25 15.08 8.31 -92.70 -0.77 14.31 16 Total: -1.00 -72.39 395.42 3.17 -69.21 By element: Atomic # 1 Polarization: 38.93 SS G_CDS: 0.16 Total: 39.09 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: 7.42 Total: 13.67 kcal Atomic # 7 Polarization: -142.52 SS G_CDS: -6.37 Total: -148.90 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.06 Total: -22.14 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.06 kcal Total: -72.39 3.17 -69.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037992697.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.320 kcal (2) G-P(sol) polarization free energy of solvation -72.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds