Wall clock time and date at job start Wed Apr 1 2020 06:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.47137 * 2 1 4 4 H 1.09002 * 109.49425 * 55.06343 * 3 2 1 5 5 C 1.53190 * 109.49664 * 295.00134 * 3 2 1 6 6 N 1.46922 * 108.77486 * 185.41582 * 5 3 2 7 7 C 1.34778 * 120.63012 * 233.58156 * 6 5 3 8 8 O 1.21605 * 119.99719 * 7.19833 * 7 6 5 9 9 C 1.47406 * 120.00447 * 187.19384 * 7 6 5 10 10 N 1.31878 * 125.93257 * 6.42004 * 9 7 6 11 11 C 1.33374 * 109.15782 * 179.97438 * 10 9 7 12 12 C 1.34873 * 108.15295 * 359.97438 * 11 10 9 13 13 N 1.35673 * 107.37406 * 0.07618 * 12 11 10 14 14 C 1.46450 * 124.57452 * 179.83654 * 13 12 11 15 15 C 1.53282 * 108.75265 * 342.81068 * 14 13 12 16 16 C 1.53144 * 109.60207 * 50.52273 * 15 14 13 17 17 C 1.50763 * 128.32112 * 180.12499 * 12 11 10 18 18 C 1.46923 * 118.74012 * 53.85935 * 6 5 3 19 19 C 1.53621 * 108.54085 * 306.09060 * 18 6 5 20 20 C 1.53040 * 109.49757 * 175.16234 * 3 2 1 21 21 H 1.08991 * 109.45705 * 61.29193 * 20 3 2 22 22 N 1.46502 * 109.45724 * 301.33811 * 20 3 2 23 23 C 1.36936 * 119.99870 * 155.00339 * 22 20 3 24 24 H 1.07995 * 119.99982 * 359.97438 * 23 22 20 25 25 C 1.38815 * 119.99642 * 179.97438 * 23 22 20 26 26 N 1.31622 * 119.99498 * 179.97438 * 25 23 22 27 27 Si 1.86794 * 120.00362 * 359.97438 * 25 23 22 28 28 H 1.48501 * 109.47282 * 89.99638 * 27 25 23 29 29 H 1.48496 * 109.47175 * 209.99750 * 27 25 23 30 30 H 1.48504 * 109.47121 * 329.99842 * 27 25 23 31 31 H 1.08999 * 109.46793 * 59.99821 * 1 2 3 32 32 H 1.09000 * 109.47167 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46822 * 300.00138 * 1 2 3 34 34 H 1.08995 * 109.46905 * 239.99676 * 2 1 3 35 35 H 1.09000 * 109.46761 * 119.99393 * 2 1 3 36 36 H 1.08997 * 109.58986 * 65.62311 * 5 3 2 37 37 H 1.09006 * 109.58340 * 305.19990 * 5 3 2 38 38 H 1.07993 * 125.92223 * 179.71997 * 11 10 9 39 39 H 1.08997 * 109.59031 * 102.59373 * 14 13 12 40 40 H 1.09002 * 109.58492 * 222.88418 * 14 13 12 41 41 H 1.08997 * 109.44912 * 170.56321 * 15 14 13 42 42 H 1.09005 * 109.44883 * 290.51437 * 15 14 13 43 43 H 1.08999 * 109.51102 * 50.45317 * 16 15 14 44 44 H 1.09005 * 109.51015 * 170.54126 * 16 15 14 45 45 H 1.09000 * 109.73237 * 44.56982 * 17 12 11 46 46 H 1.09002 * 109.77092 * 283.90791 * 17 12 11 47 47 H 1.08990 * 109.58941 * 65.92709 * 18 6 5 48 48 H 1.09000 * 109.58877 * 186.35340 * 18 6 5 49 49 H 1.08994 * 109.64109 * 294.86640 * 19 18 6 50 50 H 1.09007 * 109.45671 * 174.74048 * 19 18 6 51 51 H 0.97005 * 120.00448 * 334.99359 * 22 20 3 52 52 H 0.96999 * 119.99824 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6065 1.9816 0.8424 5 6 1.6351 2.1280 -1.3088 6 7 2.2416 3.4656 -1.3493 7 6 1.4817 4.5579 -1.5638 8 8 0.2701 4.4590 -1.5954 9 6 2.1192 5.8724 -1.7600 10 7 3.4144 6.0961 -1.8671 11 6 3.6204 7.4030 -2.0361 12 6 2.4215 8.0208 -2.0360 13 7 1.4737 7.0658 -1.8617 14 6 0.0337 7.3256 -1.7999 15 6 -0.1866 8.8184 -1.5301 16 6 0.6357 9.6465 -2.5218 17 6 2.1274 9.4907 -2.1963 18 6 3.6930 3.5893 -1.1579 19 6 4.0741 2.8880 0.1548 20 6 3.5656 1.4450 0.1217 21 1 3.9989 0.9267 -0.7337 22 7 3.9578 0.7607 1.3563 23 6 5.1962 0.1850 1.4563 24 1 5.8836 0.2349 0.6248 25 6 5.5679 -0.4629 2.6263 26 7 6.7581 -1.0167 2.7222 27 14 4.3793 -0.5486 4.0647 28 1 3.5457 -1.7718 3.9458 29 1 5.1439 -0.5924 5.3369 30 1 3.5030 0.6503 4.0548 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5137 0.8901 36 1 0.5497 2.2174 -1.3539 37 1 1.9908 1.5397 -2.1546 38 1 4.5809 7.8836 -2.1489 39 1 -0.4277 7.0538 -2.7492 40 1 -0.4095 6.7375 -0.9963 41 1 -1.2438 9.0562 -1.6476 42 1 0.1277 9.0537 -0.5133 43 1 0.4456 9.2943 -3.5357 44 1 0.3526 10.6961 -2.4422 45 1 2.7263 9.8993 -3.0102 46 1 2.3586 10.0162 -1.2697 47 1 4.2131 3.1178 -1.9916 48 1 3.9659 4.6432 -1.1033 49 1 3.6220 3.4138 0.9957 50 1 5.1585 2.8892 0.2655 51 1 3.3403 0.7157 2.1031 52 1 7.0178 -1.4698 3.5396 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037992699.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:56 Heat of formation + Delta-G solvation = 38.739977 kcal Electronic energy + Delta-G solvation = -31709.105555 eV Core-core repulsion = 27709.657328 eV Total energy + Delta-G solvation = -3999.448226 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.78588 -39.91636 -37.80795 -37.13227 -34.81853 -33.83641 -33.23876 -31.72611 -31.08461 -29.79563 -29.29069 -28.07401 -25.53985 -24.71639 -23.83369 -23.23678 -22.33569 -21.87692 -20.75341 -20.26504 -19.56992 -19.09955 -17.57068 -17.10133 -16.64549 -16.39902 -15.62726 -15.23348 -14.93743 -14.64981 -14.54517 -14.30338 -14.25955 -14.19989 -13.88201 -13.70748 -13.56756 -13.33174 -13.17185 -12.82124 -12.65780 -12.45320 -12.29762 -11.98267 -11.73840 -11.59684 -11.52491 -11.45002 -11.36622 -11.03586 -10.95524 -10.70605 -10.44963 -10.32113 -10.22691 -10.17475 -9.92584 -9.69982 -9.55230 -9.46923 -8.82081 -8.70271 -8.37771 -7.20584 -5.73533 -3.08092 1.23073 2.21154 2.42423 3.15833 3.32212 3.39627 3.43072 3.47549 4.01840 4.14172 4.18111 4.23515 4.37071 4.62170 4.80751 4.84484 4.92505 5.00655 5.06880 5.09705 5.20202 5.25615 5.27818 5.32567 5.41075 5.41712 5.47213 5.54073 5.56061 5.63100 5.64771 5.66524 5.78768 5.84811 5.99894 6.04715 6.07021 6.17815 6.26214 6.30387 6.36037 6.43264 6.44399 6.58322 6.65495 6.76178 6.85523 6.94487 7.07673 7.39727 7.64976 8.03374 8.11110 8.45890 9.24480 9.97341 10.17773 11.45009 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015654 B = 0.002796 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.271761 B =10013.548676 C =10906.137962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.107 4.107 4 H 0.069 0.931 5 C 0.121 3.879 6 N -0.578 5.578 7 C 0.603 3.397 8 O -0.554 6.554 9 C 0.153 3.847 10 N -0.438 5.438 11 C -0.024 4.024 12 C -0.003 4.003 13 N -0.410 5.410 14 C 0.104 3.896 15 C -0.136 4.136 16 C -0.127 4.127 17 C -0.048 4.048 18 C 0.073 3.927 19 C -0.148 4.148 20 C 0.186 3.814 21 H 0.057 0.943 22 N -0.746 5.746 23 C -0.238 4.238 24 H 0.091 0.909 25 C 0.004 3.996 26 N -0.935 5.935 27 Si 0.881 3.119 28 H -0.285 1.285 29 H -0.292 1.292 30 H -0.278 1.278 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.178 0.822 39 H 0.090 0.910 40 H 0.103 0.897 41 H 0.090 0.910 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.079 0.921 45 H 0.091 0.909 46 H 0.086 0.914 47 H 0.065 0.935 48 H 0.139 0.861 49 H 0.054 0.946 50 H 0.080 0.920 51 H 0.360 0.640 52 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.570 21.755 -12.331 28.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.127 4.127 4 H 0.087 0.913 5 C -0.002 4.002 6 N -0.308 5.308 7 C 0.388 3.612 8 O -0.432 6.432 9 C -0.106 4.106 10 N -0.159 5.159 11 C -0.176 4.176 12 C -0.123 4.123 13 N -0.091 5.091 14 C -0.018 4.018 15 C -0.174 4.174 16 C -0.165 4.165 17 C -0.086 4.086 18 C -0.049 4.049 19 C -0.189 4.189 20 C 0.077 3.923 21 H 0.075 0.925 22 N -0.388 5.388 23 C -0.367 4.367 24 H 0.108 0.892 25 C -0.192 4.192 26 N -0.583 5.583 27 Si 0.712 3.288 28 H -0.211 1.211 29 H -0.219 1.219 30 H -0.204 1.204 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.089 0.911 38 H 0.195 0.805 39 H 0.108 0.892 40 H 0.121 0.879 41 H 0.108 0.892 42 H 0.094 0.906 43 H 0.088 0.912 44 H 0.098 0.902 45 H 0.110 0.890 46 H 0.105 0.895 47 H 0.083 0.917 48 H 0.156 0.844 49 H 0.072 0.928 50 H 0.098 0.902 51 H 0.193 0.807 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -14.575 20.918 -12.329 28.319 hybrid contribution -1.154 0.401 1.199 1.712 sum -15.729 21.318 -11.129 28.736 Atomic orbital electron populations 1.21858 0.96681 1.01146 1.01413 1.21464 0.94476 0.95688 1.03474 1.21821 0.97870 0.96164 0.96876 0.91293 1.21821 0.99361 0.80958 0.98018 1.47843 1.09618 1.05550 1.67810 1.16516 0.85565 0.81628 0.77456 1.90768 1.13053 1.85515 1.53898 1.22522 0.87952 0.87970 1.12113 1.70226 1.12311 1.16638 1.16760 1.22146 0.97401 0.89794 1.08214 1.21311 0.89325 0.92628 1.09010 1.44950 1.08079 1.06151 1.49884 1.22147 0.77094 0.97643 1.04880 1.21958 1.01896 0.92727 1.00837 1.21688 0.94342 1.00902 0.99552 1.20303 0.96832 0.88184 1.03248 1.22999 0.77414 1.06544 0.97960 1.22682 1.02455 0.98103 0.95637 1.20218 0.90470 0.91075 0.90555 0.92502 1.42789 1.16590 1.66366 1.13010 1.19068 0.90648 1.26626 1.00406 0.89162 1.24646 0.96429 1.00464 0.97615 1.69699 1.19267 1.41758 1.27580 0.86598 0.80969 0.77763 0.83505 1.21131 1.21883 1.20404 0.92966 0.93040 0.93099 0.91846 0.90459 0.89045 0.91055 0.80495 0.89168 0.87906 0.89176 0.90617 0.91223 0.90249 0.89014 0.89545 0.91655 0.84434 0.92756 0.90160 0.80724 0.93153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.67 37.16 0.36 -1.64 16 2 C -0.11 -1.75 5.31 -26.73 -0.14 -1.89 16 3 C -0.11 -1.74 1.93 -90.50 -0.17 -1.91 16 4 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 5 C 0.12 1.77 5.33 -3.71 -0.02 1.75 16 6 N -0.58 -8.89 2.97 -173.79 -0.52 -9.40 16 7 C 0.60 9.46 7.67 -12.53 -0.10 9.36 16 8 O -0.55 -9.27 14.77 5.27 0.08 -9.19 16 9 C 0.15 2.19 7.54 -154.86 -1.17 1.02 16 10 N -0.44 -6.09 7.67 -11.45 -0.09 -6.18 16 11 C -0.02 -0.26 11.82 -18.08 -0.21 -0.47 16 12 C 0.00 -0.03 6.57 -82.06 -0.54 -0.57 16 13 N -0.41 -4.71 3.14 -110.07 -0.35 -5.06 16 14 C 0.10 0.93 6.05 -3.92 -0.02 0.91 16 15 C -0.14 -0.77 5.93 -26.51 -0.16 -0.93 16 16 C -0.13 -0.61 5.96 -26.41 -0.16 -0.77 16 17 C -0.05 -0.27 6.31 -27.61 -0.17 -0.44 16 18 C 0.07 1.13 6.13 -3.49 -0.02 1.11 16 19 C -0.15 -2.65 5.67 -26.39 -0.15 -2.80 16 20 C 0.19 3.55 2.19 -67.89 -0.15 3.40 16 21 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 22 N -0.75 -17.32 4.14 -53.39 -0.22 -17.54 16 23 C -0.24 -6.58 10.41 -15.06 -0.16 -6.74 16 24 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 25 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 26 N -0.93 -29.34 13.97 55.49 0.78 -28.57 16 27 Si 0.88 22.26 27.73 -169.99 -4.71 17.54 16 28 H -0.28 -7.13 7.11 56.52 0.40 -6.72 16 29 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 30 H -0.28 -6.69 6.52 56.52 0.37 -6.32 16 31 H 0.05 0.63 6.70 -51.93 -0.35 0.28 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.08 1.38 7.22 -51.93 -0.37 1.00 16 36 H 0.09 1.33 5.72 -51.93 -0.30 1.04 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.18 1.44 8.06 -52.49 -0.42 1.02 16 39 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.10 1.04 7.42 -51.93 -0.39 0.65 16 41 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.08 0.45 8.12 -51.93 -0.42 0.03 16 43 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 44 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 45 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 48 H 0.14 2.14 4.13 -62.78 -0.26 1.88 16 49 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 50 H 0.08 1.56 8.14 -51.92 -0.42 1.13 16 51 H 0.36 8.39 5.37 -40.82 -0.22 8.17 16 52 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 396.25 15.07 5.97 5.97 Total: -1.00 -33.38 396.25 -10.79 -44.18 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -8.66 Total: 8.85 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -3.08 Total: -0.60 kcal Atomic # 7 Polarization: -66.36 SS G_CDS: -0.39 Total: -66.75 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.08 Total: -9.19 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.71 Total: 17.54 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.38 -10.79 -44.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037992699.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.916 kcal (2) G-P(sol) polarization free energy of solvation -33.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds