Wall clock time and date at job start Wed Apr 1 2020 06:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47396 * 2 1 4 4 H 1.09003 * 109.51643 * 305.07984 * 3 2 1 5 5 C 1.53192 * 109.49840 * 65.15483 * 3 2 1 6 6 N 1.46923 * 108.77401 * 174.59195 * 5 3 2 7 7 C 1.34776 * 120.63047 * 126.37191 * 6 5 3 8 8 O 1.21600 * 120.00463 * 354.90272 * 7 6 5 9 9 C 1.47436 * 120.00144 * 174.90474 * 7 6 5 10 10 C 1.41293 * 126.41005 * 309.56705 * 9 7 6 11 11 N 1.30453 * 108.01702 * 179.85000 * 10 9 7 12 12 N 1.39929 * 108.89917 * 0.40626 * 11 10 9 13 13 C 1.46504 * 125.75697 * 179.73281 * 12 11 10 14 14 C 1.34260 * 108.49512 * 359.73555 * 12 11 10 15 15 C 1.50694 * 126.29572 * 180.02562 * 14 12 11 16 16 C 1.52997 * 117.50040 * 131.65500 * 15 14 12 17 17 C 1.52994 * 117.50227 * 63.02986 * 15 14 12 18 18 C 1.46933 * 118.74102 * 306.39150 * 6 5 3 19 19 C 1.53187 * 108.77337 * 53.60789 * 18 6 5 20 20 C 1.53039 * 109.50054 * 184.99844 * 3 2 1 21 21 H 1.09000 * 109.45230 * 58.66577 * 20 3 2 22 22 N 1.46500 * 109.45913 * 298.69928 * 20 3 2 23 23 C 1.36937 * 120.00147 * 154.92947 * 22 20 3 24 24 H 1.07998 * 119.99726 * 0.02562 * 23 22 20 25 25 C 1.38812 * 119.99967 * 180.02562 * 23 22 20 26 26 N 1.31622 * 120.00234 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00030 * 180.02562 * 25 23 22 28 28 H 1.48507 * 109.46904 * 0.02562 * 27 25 23 29 29 H 1.48496 * 109.47127 * 240.00007 * 27 25 23 30 30 H 1.48503 * 109.47214 * 119.99610 * 27 25 23 31 31 H 1.09006 * 109.47408 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47830 * 300.00528 * 1 2 3 33 33 H 1.09005 * 109.47086 * 60.00928 * 1 2 3 34 34 H 1.09003 * 109.47767 * 239.99089 * 2 1 3 35 35 H 1.09002 * 109.46676 * 119.99712 * 2 1 3 36 36 H 1.09000 * 109.58567 * 54.80002 * 5 3 2 37 37 H 1.09000 * 109.70273 * 294.44553 * 5 3 2 38 38 H 1.07998 * 125.99490 * 359.97438 * 10 9 7 39 39 H 1.08996 * 109.47211 * 264.90770 * 13 12 11 40 40 H 1.09000 * 109.46707 * 24.90862 * 13 12 11 41 41 H 1.08996 * 109.47162 * 144.90181 * 13 12 11 42 42 H 1.09000 * 115.54792 * 277.35909 * 15 14 12 43 43 H 1.08999 * 117.50002 * 359.97438 * 16 15 14 44 44 H 1.09007 * 117.49953 * 145.01823 * 16 15 14 45 45 H 1.09005 * 117.50355 * 214.98267 * 17 15 14 46 46 H 1.09003 * 117.49869 * 359.97438 * 17 15 14 47 47 H 1.09003 * 109.58530 * 293.82764 * 18 6 5 48 48 H 1.08992 * 109.58805 * 173.39647 * 18 6 5 49 49 H 1.09001 * 109.50179 * 185.41707 * 19 18 6 50 50 H 1.09004 * 109.52639 * 65.33224 * 19 18 6 51 51 H 0.97006 * 119.99876 * 334.93729 * 22 20 3 52 52 H 0.97004 * 119.99491 * 0.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9826 -0.8408 5 6 1.6384 2.1268 1.3104 6 7 2.2450 3.4644 1.3505 7 6 1.4855 4.5566 1.5670 8 8 0.2762 4.4517 1.6390 9 6 2.1209 5.8785 1.7165 10 6 3.1965 6.1998 2.5745 11 7 3.4736 7.4649 2.4179 12 7 2.5955 8.0076 1.4732 13 6 2.5771 9.4017 1.0231 14 6 1.7726 7.0354 1.0486 15 6 0.6716 7.1802 0.0300 16 6 0.6076 6.1435 -1.0933 17 6 1.0733 7.5695 -1.3940 18 6 3.6952 3.5889 1.1497 19 6 4.0737 2.8881 -0.1588 20 6 3.5652 1.4450 -0.1257 21 1 3.8545 0.9368 -1.0456 22 7 4.1507 0.7476 1.0219 23 6 5.3879 0.1706 0.9143 24 1 5.9322 0.2301 -0.0166 25 6 5.9423 -0.4907 2.0015 26 7 5.2787 -0.5636 3.1359 27 14 7.6303 -1.2771 1.8549 28 1 8.1626 -1.0551 0.4863 29 1 7.5212 -2.7353 2.1136 30 1 8.5494 -0.6655 2.8481 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5137 -0.8901 34 1 1.8934 -0.5140 -0.8899 35 1 1.8932 -0.5138 0.8901 36 1 1.9963 1.5378 2.1548 37 1 0.5533 2.2160 1.3609 38 1 3.7021 5.5173 3.2415 39 1 1.8428 9.9610 1.6028 40 1 3.5639 9.8423 1.1649 41 1 2.3110 9.4390 -0.0332 42 1 -0.2728 7.5692 0.4106 43 1 1.3621 5.3569 -1.0958 44 1 -0.3791 5.8501 -1.4519 45 1 0.3931 8.2144 -1.9505 46 1 2.1340 7.7213 -1.5941 47 1 4.2208 3.1190 1.9811 48 1 3.9669 4.6428 1.0917 49 1 5.1578 2.8893 -0.2719 50 1 3.6197 3.4145 -0.9985 51 1 3.6618 0.6944 1.8581 52 1 4.4020 -0.1555 3.2119 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038001749.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:56 Heat of formation + Delta-G solvation = 79.083185 kcal Electronic energy + Delta-G solvation = -32455.939991 eV Core-core repulsion = 28458.241177 eV Total energy + Delta-G solvation = -3997.698814 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.66831 -39.69469 -37.66992 -37.24782 -34.46744 -33.96075 -33.38328 -31.73133 -30.37728 -29.32881 -28.46563 -27.19296 -25.07965 -23.79694 -23.58458 -23.37197 -22.83412 -21.69808 -20.80000 -20.40704 -19.24190 -18.31814 -17.30391 -17.24391 -16.67416 -15.76031 -15.64997 -15.31106 -14.95900 -14.79208 -14.58559 -14.27051 -14.03630 -13.76264 -13.66384 -13.33312 -13.29806 -13.07985 -12.92264 -12.77002 -12.64468 -12.19065 -12.10948 -11.82871 -11.74081 -11.51306 -11.27985 -11.13584 -10.96049 -10.87441 -10.67720 -10.51503 -10.49871 -10.28041 -10.16773 -10.02063 -9.83529 -9.58785 -9.48113 -9.14145 -8.89848 -8.59726 -8.16500 -7.00792 -6.08221 -3.08259 1.50902 2.17670 2.28116 3.11912 3.43236 3.48280 3.52275 3.58175 3.67339 4.10124 4.30837 4.53254 4.60820 4.67602 4.81909 4.87514 4.94374 5.04581 5.09831 5.14881 5.26509 5.27644 5.34670 5.42551 5.49314 5.54835 5.58344 5.64086 5.65974 5.67321 5.74866 5.77945 5.82010 5.86594 5.89851 6.03628 6.12050 6.19177 6.29989 6.34364 6.36354 6.40403 6.53147 6.64103 6.66827 6.69303 6.76010 6.87805 7.01810 7.47971 7.78472 7.83860 8.51065 8.76825 9.23726 10.10085 10.25856 11.39675 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012183 B = 0.003537 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.803212 B = 7915.407390 C = 9217.441881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.103 4.103 4 H 0.067 0.933 5 C 0.121 3.879 6 N -0.597 5.597 7 C 0.595 3.405 8 O -0.549 6.549 9 C -0.272 4.272 10 C 0.085 3.915 11 N -0.296 5.296 12 N -0.361 5.361 13 C 0.098 3.902 14 C 0.165 3.835 15 C -0.102 4.102 16 C -0.142 4.142 17 C -0.176 4.176 18 C 0.116 3.884 19 C -0.147 4.147 20 C 0.185 3.815 21 H 0.050 0.950 22 N -0.729 5.729 23 C -0.327 4.327 24 H 0.064 0.936 25 C -0.043 4.043 26 N -0.944 5.944 27 Si 1.082 2.918 28 H -0.296 1.296 29 H -0.294 1.294 30 H -0.294 1.294 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.048 0.952 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.191 0.809 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.128 0.872 43 H 0.098 0.902 44 H 0.105 0.895 45 H 0.103 0.897 46 H 0.095 0.905 47 H 0.079 0.921 48 H 0.072 0.928 49 H 0.072 0.928 50 H 0.046 0.954 51 H 0.367 0.633 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.176 17.521 -8.916 21.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.147 4.147 3 C -0.123 4.123 4 H 0.085 0.915 5 C -0.001 4.001 6 N -0.328 5.328 7 C 0.383 3.617 8 O -0.427 6.427 9 C -0.287 4.287 10 C -0.102 4.102 11 N -0.116 5.116 12 N -0.140 5.140 13 C -0.043 4.043 14 C 0.033 3.967 15 C -0.122 4.122 16 C -0.179 4.179 17 C -0.213 4.213 18 C -0.006 4.006 19 C -0.188 4.188 20 C 0.075 3.925 21 H 0.068 0.932 22 N -0.373 5.373 23 C -0.458 4.458 24 H 0.082 0.918 25 C -0.241 4.241 26 N -0.590 5.590 27 Si 0.914 3.086 28 H -0.222 1.222 29 H -0.222 1.222 30 H -0.222 1.222 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.106 0.894 38 H 0.208 0.792 39 H 0.095 0.905 40 H 0.111 0.889 41 H 0.107 0.893 42 H 0.145 0.855 43 H 0.116 0.884 44 H 0.123 0.877 45 H 0.122 0.878 46 H 0.113 0.887 47 H 0.097 0.903 48 H 0.091 0.909 49 H 0.091 0.909 50 H 0.065 0.935 51 H 0.201 0.799 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.717 17.714 -7.924 20.884 hybrid contribution -1.522 0.272 -0.726 1.708 sum -9.240 17.986 -8.650 21.993 Atomic orbital electron populations 1.21849 0.96678 1.01050 1.01430 1.21402 0.94379 0.95770 1.03146 1.21756 0.97343 0.96041 0.97181 0.91475 1.21639 0.98916 0.81619 0.97914 1.47969 1.08692 1.06186 1.70002 1.17234 0.85832 0.82649 0.75983 1.90720 1.13830 1.86108 1.52049 1.19952 1.05344 0.94706 1.08694 1.24055 0.94815 0.93060 0.98235 1.77211 1.14353 1.10698 1.09302 1.48235 1.25027 1.08944 1.31811 1.21938 1.04604 0.77165 1.00607 1.20349 0.92497 0.87665 0.96141 1.20434 0.96623 1.07789 0.87326 1.22913 1.03657 0.92252 0.99101 1.23101 1.02279 0.99588 0.96308 1.21729 0.79174 1.00272 0.99467 1.22488 1.01682 0.99071 0.95602 1.20143 0.89573 0.90547 0.92258 0.93217 1.42473 1.19463 1.65099 1.10250 1.20072 0.94726 1.31410 0.99611 0.91839 1.25652 1.05495 1.00216 0.92751 1.70832 1.14523 1.47764 1.25885 0.83190 0.74846 0.76248 0.74355 1.22249 1.22169 1.22165 0.93162 0.92750 0.93293 0.92026 0.90932 0.91397 0.89405 0.79201 0.90503 0.88885 0.89337 0.85453 0.88384 0.87675 0.87817 0.88694 0.90317 0.90934 0.90914 0.93511 0.79867 0.93415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.68 37.16 0.36 -1.69 16 2 C -0.11 -1.73 5.19 -26.73 -0.14 -1.87 16 3 C -0.10 -1.67 2.14 -90.50 -0.19 -1.86 16 4 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 5 C 0.12 2.03 5.04 -3.71 -0.02 2.01 16 6 N -0.60 -9.76 2.97 -174.04 -0.52 -10.27 16 7 C 0.60 9.92 6.33 -12.52 -0.08 9.84 16 8 O -0.55 -10.38 16.44 5.28 0.09 -10.30 16 9 C -0.27 -4.05 4.81 -105.06 -0.51 -4.55 16 10 C 0.09 1.21 9.98 -16.98 -0.17 1.04 16 11 N -0.30 -4.15 12.50 30.86 0.39 -3.77 16 12 N -0.36 -4.24 3.98 -63.34 -0.25 -4.49 16 13 C 0.10 0.68 11.18 59.85 0.67 1.35 16 14 C 0.16 2.09 6.45 -81.60 -0.53 1.57 16 15 C -0.10 -1.04 5.58 -91.78 -0.51 -1.55 16 16 C -0.14 -1.45 9.55 -26.73 -0.26 -1.71 16 17 C -0.18 -1.35 9.14 -26.74 -0.24 -1.59 16 18 C 0.12 1.91 5.66 -3.71 -0.02 1.89 16 19 C -0.15 -2.50 5.78 -26.61 -0.15 -2.65 16 20 C 0.19 3.46 2.53 -67.89 -0.17 3.29 16 21 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 22 N -0.73 -16.62 3.72 -53.38 -0.20 -16.82 16 23 C -0.33 -8.62 9.93 -15.06 -0.15 -8.77 16 24 H 0.06 1.68 7.83 -52.49 -0.41 1.27 16 25 C -0.04 -1.21 5.50 -17.43 -0.10 -1.30 16 26 N -0.94 -28.15 13.70 55.49 0.76 -27.39 16 27 Si 1.08 25.46 29.92 -169.99 -5.09 20.37 16 28 H -0.30 -6.57 7.11 56.52 0.40 -6.16 16 29 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 30 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.74 6.70 -51.93 -0.35 0.39 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.07 1.33 7.70 -51.93 -0.40 0.93 16 36 H 0.07 1.25 6.64 -51.93 -0.34 0.90 16 37 H 0.09 1.48 5.72 -51.93 -0.30 1.18 16 38 H 0.19 2.46 8.02 -52.49 -0.42 2.04 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 0.45 6.76 -51.93 -0.35 0.09 16 42 H 0.13 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.10 1.21 7.75 -51.93 -0.40 0.81 16 44 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.09 0.74 8.04 -51.93 -0.42 0.32 16 47 H 0.08 1.49 7.74 -51.93 -0.40 1.08 16 48 H 0.07 1.10 5.25 -51.93 -0.27 0.83 16 49 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 50 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 51 H 0.37 8.76 4.78 -40.82 -0.19 8.56 16 52 H 0.25 7.48 6.77 -40.82 -0.28 7.20 16 LS Contribution 406.35 15.07 6.12 6.12 Total: -1.00 -32.48 406.35 -9.31 -41.79 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: -8.40 Total: 11.31 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -2.21 Total: -6.57 kcal Atomic # 7 Polarization: -62.91 SS G_CDS: 0.18 Total: -62.73 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 14 Polarization: 25.46 SS G_CDS: -5.09 Total: 20.37 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.48 -9.31 -41.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038001749.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.871 kcal (2) G-P(sol) polarization free energy of solvation -32.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds