Wall clock time and date at job start Wed Apr 1 2020 04:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47523 * 2 1 4 4 C 1.53002 * 109.47209 * 120.00451 * 2 1 3 5 5 N 1.46496 * 109.47279 * 174.99886 * 4 2 1 6 6 C 1.35030 * 124.88524 * 124.72110 * 5 4 2 7 7 C 1.35373 * 107.22720 * 179.89511 * 6 5 4 8 8 C 1.41502 * 105.50257 * 0.35075 * 7 6 5 9 9 C 1.47712 * 126.51510 * 179.80065 * 8 7 6 10 10 O 1.21568 * 119.99871 * 352.47995 * 9 8 7 11 11 N 1.34778 * 119.99780 * 172.47820 * 9 8 7 12 12 C 1.46944 * 120.44151 * 184.27609 * 11 9 8 13 13 C 1.53592 * 108.53011 * 125.75063 * 12 11 9 14 14 H 1.09007 * 110.59559 * 172.16016 * 13 12 11 15 15 C 1.53361 * 108.69012 * 294.35787 * 13 12 11 16 16 C 1.53008 * 109.27139 * 60.29510 * 15 13 12 17 17 C 1.53005 * 109.79667 * 60.57038 * 16 15 13 18 18 C 1.53381 * 109.25587 * 299.42275 * 17 16 15 19 19 H 1.09002 * 111.08304 * 177.82683 * 18 17 16 20 20 C 1.46944 * 120.44311 * 3.99525 * 11 9 8 21 21 N 1.47564 * 107.98089 * 56.37674 * 18 17 16 22 22 C 1.36940 * 121.61246 * 122.23748 * 21 18 17 23 23 H 1.07994 * 120.00210 * 153.04120 * 22 21 18 24 24 C 1.38813 * 119.99617 * 333.04888 * 22 21 18 25 25 N 1.31615 * 120.00171 * 337.12578 * 24 22 21 26 26 Si 1.86797 * 120.00074 * 157.13254 * 24 22 21 27 27 H 1.48498 * 109.47567 * 94.61614 * 26 24 22 28 28 H 1.48499 * 109.47420 * 214.61922 * 26 24 22 29 29 H 1.48502 * 109.47164 * 334.61395 * 26 24 22 30 30 N 1.28470 * 124.88248 * 305.01975 * 5 4 2 31 31 H 1.08998 * 109.46857 * 300.00171 * 1 2 3 32 32 H 1.09004 * 109.46866 * 59.99461 * 1 2 3 33 33 H 1.09000 * 109.47511 * 179.97438 * 1 2 3 34 34 H 1.09007 * 109.46861 * 240.00027 * 2 1 3 35 35 H 1.09003 * 109.46598 * 60.00377 * 3 2 1 36 36 H 1.08997 * 109.47194 * 179.97438 * 3 2 1 37 37 H 1.08991 * 109.47229 * 300.00432 * 3 2 1 38 38 H 1.08999 * 109.47129 * 54.99523 * 4 2 1 39 39 H 1.08995 * 109.46636 * 294.99875 * 4 2 1 40 40 H 1.07997 * 126.38716 * 359.97438 * 6 5 4 41 41 H 1.08003 * 127.24315 * 180.09108 * 7 6 5 42 42 H 1.09000 * 109.62736 * 245.46201 * 12 11 9 43 43 H 1.09002 * 109.62902 * 6.04000 * 12 11 9 44 44 H 1.09004 * 109.50802 * 180.23631 * 15 13 12 45 45 H 1.09003 * 109.50759 * 300.35572 * 15 13 12 46 46 H 1.09006 * 109.41344 * 300.47544 * 16 15 13 47 47 H 1.09003 * 109.36788 * 180.64021 * 16 15 13 48 48 H 1.09000 * 109.50965 * 179.49299 * 17 16 15 49 49 H 1.08997 * 109.54576 * 59.37493 * 17 16 15 50 50 H 1.09006 * 109.62596 * 353.95884 * 20 11 9 51 51 H 1.09004 * 109.62367 * 114.51576 * 20 11 9 52 52 H 0.97005 * 120.00479 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5000 -0.8265 1.1905 6 6 4.3453 -0.3828 2.1455 7 6 5.6027 -0.6625 1.7294 8 6 5.4535 -1.2897 0.4698 9 6 6.5401 -1.7843 -0.4000 10 8 7.6990 -1.5479 -0.1189 11 7 6.2468 -2.4976 -1.5053 12 6 7.3206 -3.0738 -2.3264 13 6 7.0616 -4.5797 -2.4819 14 1 7.7586 -5.0168 -3.1970 15 6 7.1923 -5.2454 -1.1065 16 6 6.1606 -4.6401 -0.1524 17 6 4.7498 -4.8857 -0.6910 18 6 4.6095 -4.2181 -2.0648 19 1 3.6255 -4.4073 -2.4940 20 6 4.8486 -2.7146 -1.9020 21 7 5.6698 -4.7522 -2.9412 22 6 5.3765 -5.3780 -4.1234 23 1 6.0945 -5.3723 -4.9300 24 6 4.1562 -6.0195 -4.2849 25 7 3.4812 -6.4251 -3.2303 26 14 3.4719 -6.3072 -5.9990 27 1 3.8544 -7.6648 -6.4634 28 1 1.9915 -6.1940 -5.9665 29 1 4.0255 -5.2913 -6.9300 30 7 4.1606 -1.3493 0.2206 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5139 -0.8901 35 1 1.6768 1.9562 0.8901 36 1 3.1301 1.4424 0.0005 37 1 1.6768 1.9563 -0.8899 38 1 1.6053 -1.7199 1.2951 39 1 1.7517 -0.1584 2.1369 40 1 4.0695 0.1034 3.0696 41 1 6.5256 -0.4479 2.2477 42 1 7.3255 -2.5998 -3.3079 43 1 8.2812 -2.9162 -1.8359 44 1 7.0149 -6.3167 -1.2023 45 1 8.1949 -5.0757 -0.7137 46 1 6.3335 -3.5674 -0.0650 47 1 6.2598 -5.1042 0.8289 48 1 4.0185 -4.4606 -0.0035 49 1 4.5780 -5.9577 -0.7881 50 1 4.1844 -2.3210 -1.1326 51 1 4.6546 -2.2114 -2.8493 52 1 2.6286 -6.8737 -3.3431 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039613092.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:46 Heat of formation + Delta-G solvation = 103.569764 kcal Electronic energy + Delta-G solvation = -33436.799221 eV Core-core repulsion = 29440.162225 eV Total energy + Delta-G solvation = -3996.636996 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.67029 -40.23521 -37.55241 -36.66028 -33.87769 -32.80497 -32.25338 -31.62888 -30.60162 -30.25519 -27.55251 -27.43319 -26.37216 -25.36632 -23.85478 -22.60281 -21.54491 -21.29666 -20.96290 -20.32394 -19.30662 -18.23413 -17.44613 -16.76309 -16.27451 -15.93010 -15.39462 -15.18516 -14.62980 -14.50234 -14.07863 -13.87005 -13.69520 -13.52979 -13.40215 -13.26345 -13.01596 -12.89915 -12.76953 -12.58603 -12.30212 -12.23604 -11.98150 -11.86629 -11.49409 -11.35924 -11.31129 -11.18287 -11.05597 -10.92299 -10.64152 -10.31958 -10.25077 -10.02429 -9.89241 -9.81025 -9.66985 -9.26085 -9.18838 -9.02541 -8.93033 -8.44262 -7.72633 -6.55101 -5.79186 -3.16828 1.79387 2.25760 2.44047 3.37018 3.45359 3.48187 3.56614 3.78438 4.16458 4.45961 4.49952 4.64854 4.68634 4.83177 4.93363 5.14965 5.23734 5.31779 5.33005 5.35291 5.39050 5.53544 5.59504 5.72397 5.80427 5.81819 5.84979 5.87155 5.95603 5.96580 6.02184 6.05129 6.11911 6.16014 6.33678 6.40712 6.45969 6.56972 6.60695 6.68526 6.73288 6.80597 6.96362 7.04674 7.11735 7.21075 7.31298 7.54111 7.64235 7.80385 7.96298 8.14909 8.41148 8.66049 9.18267 9.82048 10.45173 11.27781 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010482 B = 0.004542 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.692417 B = 6163.052072 C = 7908.047299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.112 4.112 3 C -0.147 4.147 4 C 0.123 3.877 5 N -0.284 5.284 6 C -0.021 4.021 7 C -0.183 4.183 8 C -0.005 4.005 9 C 0.598 3.402 10 O -0.554 6.554 11 N -0.574 5.574 12 C 0.101 3.899 13 C 0.152 3.848 14 H 0.078 0.922 15 C -0.121 4.121 16 C -0.137 4.137 17 C -0.109 4.109 18 C 0.182 3.818 19 H 0.108 0.892 20 C 0.054 3.946 21 N -0.580 5.580 22 C -0.249 4.249 23 H 0.066 0.934 24 C 0.005 3.995 25 N -0.892 5.892 26 Si 0.895 3.105 27 H -0.289 1.289 28 H -0.290 1.290 29 H -0.280 1.280 30 N -0.246 5.246 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.177 0.823 41 H 0.158 0.842 42 H 0.063 0.937 43 H 0.081 0.919 44 H 0.057 0.943 45 H 0.041 0.959 46 H 0.079 0.921 47 H 0.027 0.973 48 H 0.031 0.969 49 H 0.070 0.930 50 H 0.130 0.870 51 H 0.054 0.946 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.989 13.792 11.130 18.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.131 4.131 3 C -0.205 4.205 4 C 0.003 3.997 5 N -0.070 5.070 6 C -0.164 4.164 7 C -0.211 4.211 8 C -0.165 4.165 9 C 0.386 3.614 10 O -0.432 6.432 11 N -0.305 5.305 12 C -0.023 4.023 13 C 0.044 3.956 14 H 0.096 0.904 15 C -0.160 4.160 16 C -0.176 4.176 17 C -0.148 4.148 18 C 0.075 3.925 19 H 0.125 0.875 20 C -0.070 4.070 21 N -0.301 5.301 22 C -0.379 4.379 23 H 0.084 0.916 24 C -0.194 4.194 25 N -0.536 5.536 26 Si 0.725 3.275 27 H -0.216 1.216 28 H -0.217 1.217 29 H -0.205 1.205 30 N -0.081 5.081 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.111 0.889 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.113 0.887 39 H 0.118 0.882 40 H 0.194 0.806 41 H 0.176 0.824 42 H 0.081 0.919 43 H 0.100 0.900 44 H 0.076 0.924 45 H 0.060 0.940 46 H 0.096 0.904 47 H 0.046 0.954 48 H 0.050 0.950 49 H 0.089 0.911 50 H 0.146 0.854 51 H 0.073 0.927 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.460 13.469 10.452 17.902 hybrid contribution 0.004 -0.167 -0.184 0.248 sum -5.456 13.302 10.268 17.668 Atomic orbital electron populations 1.21778 0.93632 1.02546 1.02341 1.21456 0.96525 0.96891 0.98219 1.21835 1.01428 0.95257 1.01954 1.22161 0.73956 1.03143 1.00473 1.45822 1.07581 1.40599 1.13034 1.22781 0.89937 1.06196 0.97437 1.21698 0.97811 1.05202 0.96375 1.22064 0.90472 1.06446 0.97504 1.16802 0.86542 0.77783 0.80306 1.90736 1.19568 1.59654 1.73252 1.48003 1.09081 1.49390 1.23994 1.22283 0.89974 0.96072 0.93989 1.21226 0.89167 0.91216 0.93977 0.90433 1.21915 0.97020 1.00279 0.96825 1.22095 0.96562 1.02379 0.96514 1.21757 0.94041 1.02179 0.96820 1.20945 0.95017 0.86950 0.89575 0.87490 1.23489 0.81111 1.00877 1.01550 1.44486 0.98821 1.65310 1.21460 1.19120 1.01736 1.27668 0.89335 0.91602 1.24922 1.00112 0.97669 0.96688 1.70077 1.15593 1.40190 1.27724 0.86403 0.78252 0.77920 0.84950 1.21632 1.21664 1.20496 1.73330 1.05310 1.16517 1.12968 0.92514 0.91765 0.91934 0.88937 0.92722 0.92608 0.92119 0.88680 0.88194 0.80618 0.82396 0.91907 0.90049 0.92437 0.94023 0.90368 0.95379 0.95003 0.91111 0.85364 0.92731 0.93795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.19 37.16 0.34 -0.61 16 2 C -0.11 -0.94 2.95 -90.62 -0.27 -1.20 16 3 C -0.15 -1.21 9.08 37.16 0.34 -0.87 16 4 C 0.12 0.99 5.79 -4.04 -0.02 0.97 16 5 N -0.28 -3.28 2.86 -61.33 -0.18 -3.45 16 6 C -0.02 -0.22 11.40 -17.17 -0.20 -0.41 16 7 C -0.18 -2.51 10.82 -39.36 -0.43 -2.93 16 8 C -0.01 -0.09 6.72 -82.76 -0.56 -0.64 16 9 C 0.60 11.66 5.13 -12.39 -0.06 11.60 16 10 O -0.55 -11.83 16.34 5.31 0.09 -11.74 16 11 N -0.57 -11.32 1.66 -173.70 -0.29 -11.61 16 12 C 0.10 1.98 5.88 -3.49 -0.02 1.96 16 13 C 0.15 3.25 3.62 -66.85 -0.24 3.01 16 14 H 0.08 1.61 8.01 -51.93 -0.42 1.20 16 15 C -0.12 -2.53 5.58 -26.54 -0.15 -2.67 16 16 C -0.14 -2.87 5.55 -26.72 -0.15 -3.02 16 17 C -0.11 -2.41 5.57 -26.53 -0.15 -2.56 16 18 C 0.18 4.17 2.68 -67.09 -0.18 3.99 16 19 H 0.11 2.76 5.99 -51.93 -0.31 2.45 16 20 C 0.05 1.09 5.72 -3.74 -0.02 1.06 16 21 N -0.58 -14.05 2.53 -155.71 -0.39 -14.45 16 22 C -0.25 -6.63 9.68 -15.06 -0.15 -6.77 16 23 H 0.07 1.74 7.93 -52.49 -0.42 1.32 16 24 C 0.01 0.14 4.86 -17.43 -0.08 0.05 16 25 N -0.89 -24.72 11.28 55.49 0.63 -24.10 16 26 Si 0.90 21.16 29.61 -169.99 -5.03 16.12 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 29 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 30 N -0.25 -3.75 7.90 33.42 0.26 -3.48 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 1.02 7.96 -51.93 -0.41 0.60 16 35 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.05 0.57 7.75 -51.93 -0.40 0.17 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.10 0.50 8.04 -51.93 -0.42 0.08 16 40 H 0.18 1.11 8.06 -52.49 -0.42 0.69 16 41 H 0.16 1.99 8.06 -52.48 -0.42 1.57 16 42 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.08 1.56 7.01 -51.93 -0.36 1.20 16 44 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 45 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.08 1.62 2.38 -52.44 -0.13 1.49 16 47 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.07 1.79 8.00 -51.93 -0.42 1.37 16 50 H 0.13 2.40 3.69 -119.91 -0.44 1.95 16 51 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 52 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 392.64 15.07 5.92 5.92 Total: -1.00 -31.39 392.64 -9.77 -41.15 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -8.78 Total: 4.69 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -1.99 Total: 0.94 kcal Atomic # 7 Polarization: -57.12 SS G_CDS: 0.03 Total: -57.09 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.09 Total: -11.74 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.39 -9.77 -41.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039613092.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.722 kcal (2) G-P(sol) polarization free energy of solvation -31.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds