Wall clock time and date at job start Wed Apr 1 2020 04:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47152 * 2 1 4 4 C 1.52998 * 109.47265 * 120.00441 * 2 1 3 5 5 N 1.46505 * 109.46992 * 65.30101 * 4 2 1 6 6 N 1.28449 * 125.18968 * 274.31580 * 5 4 2 7 7 C 1.30863 * 110.92409 * 180.26292 * 6 5 4 8 8 C 1.39671 * 107.86315 * 359.75838 * 7 6 5 9 9 C 1.36593 * 125.19244 * 94.16517 * 5 4 2 10 10 C 1.47167 * 126.88256 * 0.02562 * 9 5 4 11 11 O 1.21632 * 119.99727 * 331.81262 * 10 9 5 12 12 N 1.34770 * 119.99886 * 151.53856 * 10 9 5 13 13 C 1.46952 * 120.44434 * 172.22487 * 12 10 9 14 14 C 1.53595 * 108.53345 * 125.74693 * 13 12 10 15 15 H 1.08998 * 110.59776 * 172.16521 * 14 13 12 16 16 C 1.53363 * 108.69061 * 294.36145 * 14 13 12 17 17 C 1.53016 * 109.26860 * 60.29024 * 16 14 13 18 18 C 1.53009 * 109.79214 * 60.57392 * 17 16 14 19 19 C 1.53368 * 109.25538 * 299.41732 * 18 17 16 20 20 H 1.08997 * 111.08513 * 177.83525 * 19 18 17 21 21 C 1.46941 * 120.44397 * 351.94394 * 12 10 9 22 22 N 1.47569 * 107.76542 * 51.14998 * 14 13 12 23 23 C 1.36934 * 121.61239 * 120.46005 * 22 14 13 24 24 H 1.07994 * 119.99719 * 329.04209 * 23 22 14 25 25 C 1.38809 * 119.99842 * 149.04585 * 23 22 14 26 26 N 1.31623 * 120.00206 * 350.05319 * 25 23 22 27 27 Si 1.86804 * 120.00037 * 170.05947 * 25 23 22 28 28 H 1.48505 * 109.47071 * 359.97438 * 27 25 23 29 29 H 1.48490 * 109.47365 * 119.99681 * 27 25 23 30 30 H 1.48500 * 109.46788 * 240.00012 * 27 25 23 31 31 H 1.08997 * 109.47404 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47067 * 299.99754 * 1 2 3 33 33 H 1.09006 * 109.47323 * 59.99316 * 1 2 3 34 34 H 1.09004 * 109.46431 * 240.00148 * 2 1 3 35 35 H 1.09001 * 109.46844 * 184.94843 * 3 2 1 36 36 H 1.08992 * 109.47128 * 304.95015 * 3 2 1 37 37 H 1.09001 * 109.46718 * 64.95515 * 3 2 1 38 38 H 1.09000 * 109.46994 * 305.30515 * 4 2 1 39 39 H 1.08996 * 109.47181 * 185.29848 * 4 2 1 40 40 H 1.08003 * 126.06492 * 179.71762 * 7 6 5 41 41 H 1.08001 * 127.31688 * 179.97438 * 8 7 6 42 42 H 1.08995 * 109.62770 * 245.46666 * 13 12 10 43 43 H 1.09005 * 109.62324 * 6.03769 * 13 12 10 44 44 H 1.08995 * 109.50699 * 180.22925 * 16 14 13 45 45 H 1.09007 * 109.50476 * 300.35931 * 16 14 13 46 46 H 1.08996 * 109.41804 * 300.46912 * 17 16 14 47 47 H 1.08999 * 109.41268 * 180.66766 * 17 16 14 48 48 H 1.09006 * 109.50334 * 179.48800 * 18 17 16 49 49 H 1.08994 * 109.54239 * 59.37615 * 18 17 16 50 50 H 1.08993 * 109.62858 * 353.95581 * 21 12 10 51 51 H 1.09007 * 109.62283 * 114.52501 * 21 12 10 52 52 H 0.96997 * 119.99594 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6587 -2.1345 1.1869 6 7 0.5342 -2.6157 1.5792 7 6 0.4924 -3.9114 1.4003 8 6 1.7063 -4.3049 0.8325 9 6 2.4435 -3.1410 0.7003 10 6 3.8031 -3.0142 0.1515 11 8 4.1516 -1.9749 -0.3757 12 7 4.6638 -4.0476 0.2382 13 6 5.9601 -3.9969 -0.4521 14 6 7.0707 -4.2650 0.5744 15 1 8.0347 -4.3722 0.0772 16 6 7.0960 -3.1106 1.5838 17 6 5.7435 -3.0320 2.2951 18 6 5.4745 -4.3397 3.0426 19 6 5.4425 -5.4988 2.0387 20 1 5.2902 -6.4519 2.5450 21 6 4.3212 -5.2376 1.0291 22 7 6.7218 -5.4999 1.3031 23 6 7.5451 -6.5940 1.2966 24 1 8.1641 -6.7989 0.4357 25 6 7.5840 -7.4399 2.3965 26 7 6.9857 -7.0916 3.5160 27 14 8.4856 -9.0723 2.2881 28 1 9.0688 -9.2265 0.9311 29 1 9.5711 -9.1066 3.3007 30 1 7.5329 -10.1819 2.5458 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5140 -0.8900 34 1 1.8932 -0.5139 -0.8901 35 1 3.1264 1.4437 -0.0886 36 1 1.6061 1.9813 -0.8423 37 1 1.7509 1.9300 0.9311 38 1 1.6012 -0.2653 2.1366 39 1 3.1258 -0.6399 1.2979 40 1 -0.3339 -4.5612 1.6483 41 1 2.0061 -5.3049 0.5559 42 1 5.9901 -4.7584 -1.2313 43 1 6.1009 -3.0107 -0.8946 44 1 7.8832 -3.2856 2.3171 45 1 7.2869 -2.1736 1.0605 46 1 4.9564 -2.8664 1.5595 47 1 5.7549 -2.2048 3.0047 48 1 4.5144 -4.2753 3.5548 49 1 6.2655 -4.5119 3.7723 50 1 3.3849 -5.0670 1.5603 51 1 4.2191 -6.0990 0.3690 52 1 7.0126 -7.6829 4.2845 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039613210.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:57 Heat of formation + Delta-G solvation = 96.479738 kcal Electronic energy + Delta-G solvation = -33561.518145 eV Core-core repulsion = 29564.573702 eV Total energy + Delta-G solvation = -3996.944443 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 2.59 seconds Orbital eigenvalues (eV) -42.56680 -40.40394 -37.66707 -36.58760 -34.11874 -32.95923 -32.09344 -31.96278 -30.55061 -30.32159 -27.32219 -27.07089 -26.47802 -25.60195 -24.06122 -22.49560 -21.80427 -21.40543 -21.02023 -20.54631 -19.20152 -18.41383 -17.64215 -16.46182 -16.00704 -15.91059 -15.58965 -14.98076 -14.89167 -14.60984 -14.09238 -13.99467 -13.81278 -13.67766 -13.52529 -13.12605 -13.00186 -12.93375 -12.73473 -12.47628 -12.39492 -12.12224 -12.08974 -11.80822 -11.50870 -11.34915 -11.15597 -11.12376 -10.96744 -10.87940 -10.74764 -10.61321 -10.28524 -10.18094 -10.10464 -10.00615 -9.80346 -9.48261 -9.36713 -9.06633 -8.77551 -8.55193 -7.94065 -6.61344 -5.85596 -3.35708 1.47706 2.42870 2.71594 3.26691 3.31903 3.39742 3.40914 3.44166 4.39986 4.47385 4.56691 4.64047 4.84911 4.93159 5.17107 5.21782 5.25877 5.30485 5.40333 5.48657 5.51162 5.63310 5.68014 5.70374 5.71750 5.76881 5.79829 5.85359 5.88780 5.91942 5.93535 5.98599 6.10641 6.13833 6.18574 6.23007 6.39722 6.42649 6.47387 6.58296 6.58839 6.70584 6.83287 6.86060 6.97853 7.06356 7.08409 7.48300 7.54521 7.68850 7.79760 8.14665 8.35250 8.37313 9.10627 9.70220 10.33239 11.20070 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019696 B = 0.003498 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.267064 B = 8003.202549 C = 8623.241898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.106 4.106 3 C -0.142 4.142 4 C 0.127 3.873 5 N -0.255 5.255 6 N -0.281 5.281 7 C -0.007 4.007 8 C -0.194 4.194 9 C -0.025 4.025 10 C 0.586 3.414 11 O -0.553 6.553 12 N -0.570 5.570 13 C 0.103 3.897 14 C 0.152 3.848 15 H 0.079 0.921 16 C -0.119 4.119 17 C -0.138 4.138 18 C -0.112 4.112 19 C 0.177 3.823 20 H 0.123 0.877 21 C 0.067 3.933 22 N -0.580 5.580 23 C -0.248 4.248 24 H 0.067 0.933 25 C 0.006 3.994 26 N -0.900 5.900 27 Si 0.905 3.095 28 H -0.278 1.278 29 H -0.291 1.291 30 H -0.289 1.289 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.095 0.905 39 H 0.106 0.894 40 H 0.184 0.816 41 H 0.165 0.835 42 H 0.065 0.935 43 H 0.083 0.917 44 H 0.057 0.943 45 H 0.042 0.958 46 H 0.076 0.924 47 H 0.028 0.972 48 H 0.033 0.967 49 H 0.073 0.927 50 H 0.090 0.910 51 H 0.065 0.935 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.028 10.013 -4.898 15.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 C -0.200 4.200 4 C 0.007 3.993 5 N -0.042 5.042 6 N -0.113 5.113 7 C -0.183 4.183 8 C -0.222 4.222 9 C -0.154 4.154 10 C 0.374 3.626 11 O -0.433 6.433 12 N -0.302 5.302 13 C -0.021 4.021 14 C 0.044 3.956 15 H 0.097 0.903 16 C -0.159 4.159 17 C -0.176 4.176 18 C -0.151 4.151 19 C 0.070 3.930 20 H 0.141 0.859 21 C -0.056 4.056 22 N -0.301 5.301 23 C -0.378 4.378 24 H 0.085 0.915 25 C -0.193 4.193 26 N -0.544 5.544 27 Si 0.735 3.265 28 H -0.203 1.203 29 H -0.217 1.217 30 H -0.216 1.216 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.113 0.887 39 H 0.124 0.876 40 H 0.201 0.799 41 H 0.182 0.818 42 H 0.084 0.916 43 H 0.101 0.899 44 H 0.076 0.924 45 H 0.060 0.940 46 H 0.093 0.907 47 H 0.046 0.954 48 H 0.051 0.949 49 H 0.091 0.909 50 H 0.108 0.892 51 H 0.083 0.917 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.377 11.458 -4.619 16.795 hybrid contribution 0.967 -1.662 -0.050 1.923 sum -10.411 9.796 -4.669 15.038 Atomic orbital electron populations 1.21872 0.94467 1.02588 1.01524 1.21416 0.96544 0.96730 0.97884 1.21732 1.01719 0.94503 1.02012 1.22175 1.02263 0.74823 1.00078 1.45679 1.09016 1.07817 1.41726 1.73143 1.05266 1.12970 1.19890 1.23544 0.99338 0.91097 1.04325 1.22424 0.95074 0.98245 1.06471 1.21515 0.95703 0.89474 1.08684 1.16735 0.82533 0.83979 0.79365 1.90770 1.77854 1.27845 1.46836 1.47888 1.16626 1.17426 1.48216 1.22320 0.82637 1.01832 0.95322 1.21238 0.94925 0.87716 0.91720 0.90300 1.21888 0.97597 0.97361 0.99025 1.22094 0.98842 0.97329 0.99319 1.21807 0.99838 0.94643 0.98861 1.21141 0.82984 0.99506 0.89355 0.85934 1.23168 1.01470 0.85872 0.95135 1.44398 1.18507 1.09469 1.57704 1.19195 1.19475 1.00755 0.98364 0.91540 1.25142 0.99505 0.99923 0.94715 1.69883 1.46566 1.36338 1.01604 0.86189 0.79209 0.83658 0.77475 1.20324 1.21747 1.21602 0.91988 0.92560 0.92755 0.89858 0.91911 0.92037 0.92522 0.88698 0.87630 0.79928 0.81784 0.91638 0.89864 0.92411 0.93973 0.90651 0.95369 0.94870 0.90851 0.89205 0.91661 0.93567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 8.97 37.16 0.33 -1.19 16 2 C -0.11 -1.19 3.12 -90.62 -0.28 -1.47 16 3 C -0.14 -1.29 9.19 37.16 0.34 -0.95 16 4 C 0.13 1.59 5.18 -4.04 -0.02 1.56 16 5 N -0.26 -3.68 3.12 -57.14 -0.18 -3.86 16 6 N -0.28 -3.94 10.53 30.59 0.32 -3.62 16 7 C -0.01 -0.09 12.03 -17.43 -0.21 -0.30 16 8 C -0.19 -2.66 8.58 -38.99 -0.33 -2.99 16 9 C -0.03 -0.39 6.38 -82.06 -0.52 -0.91 16 10 C 0.59 10.06 4.79 -12.64 -0.06 10.00 16 11 O -0.55 -10.22 14.78 5.25 0.08 -10.14 16 12 N -0.57 -9.90 1.66 -173.89 -0.29 -10.19 16 13 C 0.10 1.80 5.90 -3.49 -0.02 1.78 16 14 C 0.15 2.99 3.62 -66.85 -0.24 2.75 16 15 H 0.08 1.52 8.01 -51.93 -0.42 1.11 16 16 C -0.12 -2.32 5.58 -26.53 -0.15 -2.46 16 17 C -0.14 -2.67 5.55 -26.72 -0.15 -2.82 16 18 C -0.11 -2.35 5.52 -26.54 -0.15 -2.50 16 19 C 0.18 3.77 2.63 -67.09 -0.18 3.60 16 20 H 0.12 2.98 5.83 -51.93 -0.30 2.67 16 21 C 0.07 1.18 4.62 -3.74 -0.02 1.16 16 22 N -0.58 -13.13 2.53 -155.71 -0.39 -13.52 16 23 C -0.25 -6.25 9.73 -15.06 -0.15 -6.39 16 24 H 0.07 1.66 7.85 -52.49 -0.41 1.25 16 25 C 0.01 0.15 5.15 -17.43 -0.09 0.06 16 26 N -0.90 -23.85 10.62 55.49 0.59 -23.26 16 27 Si 0.90 20.49 29.57 -169.99 -5.03 15.47 16 28 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 29 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 30 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 31 H 0.06 0.75 6.73 -51.93 -0.35 0.40 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.11 1.44 6.88 -51.93 -0.36 1.08 16 40 H 0.18 1.69 8.06 -52.48 -0.42 1.27 16 41 H 0.16 2.02 6.52 -52.49 -0.34 1.68 16 42 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.08 1.43 6.98 -51.93 -0.36 1.06 16 44 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.04 0.75 8.14 -51.92 -0.42 0.32 16 46 H 0.08 1.42 2.44 -52.44 -0.13 1.29 16 47 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.07 1.77 7.90 -51.93 -0.41 1.36 16 50 H 0.09 1.45 4.25 -51.93 -0.22 1.23 16 51 H 0.07 1.13 8.14 -51.92 -0.42 0.71 16 52 H 0.25 6.61 8.31 -40.82 -0.34 6.27 16 LS Contribution 386.27 15.07 5.82 5.82 Total: -1.00 -28.10 386.27 -9.32 -37.43 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -8.35 Total: 6.96 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -1.89 Total: -1.09 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: 0.05 Total: -54.45 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.08 Total: -10.14 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.03 Total: 15.47 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -28.10 -9.32 -37.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039613210.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.908 kcal (2) G-P(sol) polarization free energy of solvation -28.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.59 seconds