Wall clock time and date at job start Wed Apr 1 2020 04:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47335 * 2 1 4 4 C 1.53000 * 109.47045 * 120.00090 * 2 1 3 5 5 N 1.46499 * 109.47406 * 239.99779 * 2 1 3 6 6 C 1.35037 * 124.88301 * 75.00369 * 5 2 1 7 7 C 1.35365 * 107.22947 * 180.02562 * 6 5 2 8 8 C 1.41497 * 105.50238 * 359.97438 * 7 6 5 9 9 C 1.47719 * 126.51693 * 180.02562 * 8 7 6 10 10 O 1.21566 * 119.99829 * 7.19512 * 9 8 7 11 11 N 1.34773 * 119.99738 * 187.19493 * 9 8 7 12 12 C 1.46952 * 120.44608 * 6.97683 * 11 9 8 13 13 C 1.53593 * 108.53210 * 125.75103 * 12 11 9 14 14 H 1.08998 * 110.59883 * 172.16098 * 13 12 11 15 15 C 1.53373 * 108.68464 * 294.35892 * 13 12 11 16 16 C 1.53003 * 109.27004 * 60.29593 * 15 13 12 17 17 C 1.53007 * 109.79697 * 60.56722 * 16 15 13 18 18 C 1.53369 * 109.26085 * 299.41978 * 17 16 15 19 19 H 1.08996 * 111.09382 * 177.82900 * 18 17 16 20 20 C 1.46941 * 120.44200 * 186.69773 * 11 9 8 21 21 N 1.47570 * 107.76658 * 51.14323 * 13 12 11 22 22 C 1.36936 * 121.60861 * 120.50463 * 21 13 12 23 23 H 1.08001 * 120.00215 * 221.50830 * 22 21 13 24 24 C 1.38820 * 120.00149 * 41.51014 * 22 21 13 25 25 N 1.31620 * 119.99510 * 6.42691 * 24 22 21 26 26 Si 1.86794 * 120.00139 * 186.42779 * 24 22 21 27 27 H 1.48498 * 109.47240 * 59.99917 * 26 24 22 28 28 H 1.48495 * 109.47275 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.46862 * 300.00085 * 26 24 22 30 30 N 1.28472 * 124.88779 * 254.69800 * 5 2 1 31 31 H 1.09002 * 109.47192 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47161 * 60.00115 * 1 2 3 33 33 H 1.09000 * 109.47668 * 299.99776 * 1 2 3 34 34 H 1.09011 * 109.47004 * 59.99715 * 3 2 1 35 35 H 1.08995 * 109.47725 * 179.97438 * 3 2 1 36 36 H 1.08998 * 109.47170 * 300.00225 * 3 2 1 37 37 H 1.09002 * 109.47176 * 59.99928 * 4 2 1 38 38 H 1.09005 * 109.47309 * 180.02562 * 4 2 1 39 39 H 1.09005 * 109.47112 * 299.99636 * 4 2 1 40 40 H 1.08006 * 126.38619 * 359.97438 * 6 5 2 41 41 H 1.07997 * 127.24703 * 180.02562 * 7 6 5 42 42 H 1.08997 * 109.62413 * 245.46385 * 12 11 9 43 43 H 1.08999 * 109.62353 * 6.03788 * 12 11 9 44 44 H 1.09005 * 109.49917 * 180.22931 * 15 13 12 45 45 H 1.08997 * 109.50644 * 300.35517 * 15 13 12 46 46 H 1.08997 * 109.41691 * 300.46955 * 16 15 13 47 47 H 1.09000 * 109.36156 * 180.63512 * 16 15 13 48 48 H 1.09002 * 109.50787 * 179.48787 * 17 16 15 49 49 H 1.09002 * 109.54378 * 59.37963 * 17 16 15 50 50 H 1.09001 * 109.62391 * 353.95913 * 20 11 9 51 51 H 1.08998 * 109.62440 * 114.51872 * 20 11 9 52 52 H 0.97004 * 119.99724 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 2.0183 -0.6906 -1.1961 6 6 2.0055 -0.1759 -2.4444 7 6 2.5352 -1.1099 -3.2687 8 6 2.8627 -2.2065 -2.4368 9 6 3.4724 -3.4825 -2.8637 10 8 3.8619 -3.6174 -4.0073 11 7 3.5970 -4.4970 -1.9852 12 6 2.9949 -4.4023 -0.6481 13 6 2.0944 -5.6274 -0.4303 14 1 1.7393 -5.6641 0.5995 15 6 0.9217 -5.5567 -1.4162 16 6 1.4638 -5.5623 -2.8470 17 6 2.2477 -6.8519 -3.0991 18 6 3.4259 -6.9274 -2.1201 19 1 3.9837 -7.8550 -2.2483 20 6 4.3315 -5.7150 -2.3539 21 7 2.8865 -6.8308 -0.7499 22 6 3.1097 -7.8109 0.1800 23 1 4.0847 -8.2687 0.2588 24 6 2.0827 -8.2162 1.0215 25 7 0.8641 -7.7517 0.8436 26 14 2.4302 -9.4208 2.4063 27 1 3.4397 -8.8389 3.3269 28 1 1.1758 -9.6912 3.1536 29 1 2.9512 -10.6903 1.8389 30 7 2.5255 -1.8709 -1.2075 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 0.5138 0.8900 34 1 1.6766 1.9564 0.8901 35 1 3.1299 1.4426 0.0005 36 1 1.6766 1.9563 -0.8899 37 1 1.6766 -1.7489 1.2492 38 1 3.1300 -0.7209 1.2495 39 1 1.6766 -0.2074 2.1393 40 1 1.6400 0.7990 -2.7318 41 1 2.6785 -1.0337 -4.3364 42 1 3.7808 -4.3867 0.1070 43 1 2.3985 -3.4926 -0.5787 44 1 0.2711 -6.4190 -1.2702 45 1 0.3567 -4.6405 -1.2447 46 1 2.1217 -4.7048 -2.9886 47 1 0.6321 -5.5007 -3.5488 48 1 2.6240 -6.8551 -4.1221 49 1 1.5941 -7.7112 -2.9490 50 1 4.6137 -5.6682 -3.4057 51 1 5.2251 -5.8048 -1.7361 52 1 0.1465 -8.0346 1.4318 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039617100.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:05 Heat of formation + Delta-G solvation = 103.992877 kcal Electronic energy + Delta-G solvation = -33585.948491 eV Core-core repulsion = 29589.329842 eV Total energy + Delta-G solvation = -3996.618648 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 4.39 seconds Orbital eigenvalues (eV) -42.71102 -40.23818 -37.57151 -36.85492 -33.82343 -32.68314 -31.85894 -30.85742 -30.48480 -30.23602 -27.81913 -27.58420 -26.79878 -25.41967 -24.17711 -22.99491 -21.88717 -21.30541 -20.82918 -19.78489 -19.26661 -18.18100 -17.37275 -16.62378 -16.02256 -15.84287 -15.40195 -14.70704 -14.53482 -14.51686 -14.01681 -13.89089 -13.79272 -13.49643 -13.35806 -13.09150 -12.83421 -12.77197 -12.69737 -12.58435 -12.31877 -12.22463 -12.09094 -11.89220 -11.83395 -11.48453 -11.40611 -11.20180 -11.11696 -10.87641 -10.69880 -10.37942 -10.26356 -9.95589 -9.89239 -9.80849 -9.63051 -9.30823 -9.15859 -8.98577 -8.93494 -8.42657 -7.68624 -6.32805 -5.78027 -3.36820 1.82634 2.28457 2.38967 3.37107 3.42251 3.43594 3.59276 3.80404 4.11765 4.39073 4.47330 4.49891 4.72641 4.77416 5.07010 5.13763 5.26605 5.31578 5.37610 5.38145 5.40158 5.47561 5.52118 5.60872 5.77649 5.83900 5.85381 5.90816 5.91729 6.01963 6.05422 6.11007 6.14886 6.20717 6.38202 6.45372 6.49388 6.60222 6.66218 6.72846 6.78838 6.85192 6.99287 7.07754 7.18911 7.25581 7.33292 7.54554 7.71636 7.82278 7.99371 8.16360 8.53927 8.69083 9.22355 9.78414 10.50947 11.27506 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012519 B = 0.004191 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.103463 B = 6679.951392 C = 8065.094884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.168 3.832 3 C -0.158 4.158 4 C -0.150 4.150 5 N -0.278 5.278 6 C -0.022 4.022 7 C -0.182 4.182 8 C -0.010 4.010 9 C 0.599 3.401 10 O -0.553 6.553 11 N -0.574 5.574 12 C 0.067 3.933 13 C 0.186 3.814 14 H 0.098 0.902 15 C -0.112 4.112 16 C -0.137 4.137 17 C -0.119 4.119 18 C 0.152 3.848 19 H 0.077 0.923 20 C 0.101 3.899 21 N -0.578 5.578 22 C -0.258 4.258 23 H 0.059 0.941 24 C 0.019 3.981 25 N -0.893 5.893 26 Si 0.901 3.099 27 H -0.283 1.283 28 H -0.291 1.291 29 H -0.282 1.282 30 N -0.245 5.245 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.174 0.826 41 H 0.158 0.842 42 H 0.055 0.945 43 H 0.115 0.885 44 H 0.077 0.923 45 H 0.028 0.972 46 H 0.079 0.921 47 H 0.027 0.973 48 H 0.040 0.960 49 H 0.056 0.944 50 H 0.081 0.919 51 H 0.061 0.939 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.511 18.792 -1.385 18.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.086 3.914 3 C -0.216 4.216 4 C -0.207 4.207 5 N -0.067 5.067 6 C -0.164 4.164 7 C -0.210 4.210 8 C -0.170 4.170 9 C 0.387 3.613 10 O -0.431 6.431 11 N -0.305 5.305 12 C -0.057 4.057 13 C 0.079 3.921 14 H 0.116 0.884 15 C -0.151 4.151 16 C -0.175 4.175 17 C -0.158 4.158 18 C 0.045 3.955 19 H 0.096 0.904 20 C -0.023 4.023 21 N -0.299 5.299 22 C -0.388 4.388 23 H 0.077 0.923 24 C -0.182 4.182 25 N -0.535 5.535 26 Si 0.730 3.270 27 H -0.209 1.209 28 H -0.217 1.217 29 H -0.208 1.208 30 N -0.080 5.080 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.191 0.809 41 H 0.175 0.825 42 H 0.073 0.927 43 H 0.132 0.868 44 H 0.096 0.904 45 H 0.046 0.954 46 H 0.097 0.903 47 H 0.046 0.954 48 H 0.059 0.941 49 H 0.075 0.925 50 H 0.099 0.901 51 H 0.079 0.921 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.499 18.316 -0.634 18.334 hybrid contribution -0.132 -0.388 -0.060 0.414 sum -0.632 17.928 -0.694 17.953 Atomic orbital electron populations 1.22256 0.92277 1.04050 1.03253 1.21007 0.95038 0.92238 0.83125 1.22225 1.02479 0.93300 1.03582 1.21998 1.02459 1.01996 0.94278 1.46045 1.42642 1.10638 1.07347 1.22645 1.07446 1.01491 0.84843 1.21702 1.05687 0.92778 1.00843 1.22060 1.07379 0.97416 0.90100 1.16785 0.78347 0.81435 0.84780 1.90739 1.51860 1.82065 1.18413 1.47976 1.51933 1.15428 1.15200 1.23334 0.97963 1.02946 0.81472 1.20948 0.88828 0.83488 0.98837 0.88390 1.21800 0.98886 1.00089 0.94287 1.22078 0.98865 0.99559 0.97027 1.21880 0.98621 0.98017 0.97266 1.21180 0.92830 0.94604 0.86915 0.90449 1.22185 0.94667 0.84989 1.00479 1.44236 1.61003 1.19006 1.05681 1.18976 0.93960 1.14045 1.11841 0.92341 1.25409 0.94861 0.97605 1.00286 1.69924 0.99613 1.45516 1.38423 0.86432 0.76919 0.81581 0.82065 1.20928 1.21703 1.20824 1.73563 1.13931 0.98118 1.22402 0.90985 0.91691 0.90083 0.89887 0.91356 0.91469 0.90172 0.91353 0.90664 0.80862 0.82457 0.92659 0.86814 0.90441 0.95364 0.90332 0.95428 0.94112 0.92504 0.90058 0.92062 0.93590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 8.70 37.15 0.32 -0.90 16 2 C 0.17 1.46 1.21 -131.82 -0.16 1.30 16 3 C -0.16 -0.96 8.27 37.16 0.31 -0.65 16 4 C -0.15 -1.40 8.00 37.16 0.30 -1.10 16 5 N -0.28 -3.36 3.16 -48.62 -0.15 -3.52 16 6 C -0.02 -0.24 10.52 -17.17 -0.18 -0.42 16 7 C -0.18 -2.58 10.81 -39.37 -0.43 -3.01 16 8 C -0.01 -0.17 6.82 -82.76 -0.56 -0.74 16 9 C 0.60 11.83 5.06 -12.39 -0.06 11.76 16 10 O -0.55 -11.94 16.25 5.31 0.09 -11.85 16 11 N -0.57 -11.41 1.66 -173.69 -0.29 -11.70 16 12 C 0.07 1.35 5.57 -3.49 -0.02 1.33 16 13 C 0.19 4.28 2.60 -66.84 -0.17 4.10 16 14 H 0.10 2.51 6.60 -51.93 -0.34 2.17 16 15 C -0.11 -2.51 5.51 -26.54 -0.15 -2.66 16 16 C -0.14 -2.94 5.55 -26.73 -0.15 -3.09 16 17 C -0.12 -2.54 5.57 -26.54 -0.15 -2.68 16 18 C 0.15 3.31 3.62 -67.09 -0.24 3.06 16 19 H 0.08 1.64 8.01 -51.93 -0.42 1.23 16 20 C 0.10 2.00 5.85 -3.74 -0.02 1.98 16 21 N -0.58 -14.08 2.46 -155.70 -0.38 -14.46 16 22 C -0.26 -6.86 9.62 -15.06 -0.14 -7.01 16 23 H 0.06 1.55 7.84 -52.49 -0.41 1.14 16 24 C 0.02 0.51 5.16 -17.43 -0.09 0.42 16 25 N -0.89 -24.66 10.78 55.49 0.60 -24.06 16 26 Si 0.90 21.10 29.56 -169.99 -5.02 16.08 16 27 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 28 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 29 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 30 N -0.25 -3.81 7.40 33.42 0.25 -3.56 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.35 8.14 -51.92 -0.42 -0.07 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.34 7.27 -51.93 -0.38 -0.04 16 37 H 0.08 0.92 8.00 -51.93 -0.42 0.51 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.17 1.24 7.47 -52.48 -0.39 0.85 16 41 H 0.16 2.05 8.06 -52.49 -0.42 1.63 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.11 2.14 4.14 -72.47 -0.30 1.84 16 44 H 0.08 1.98 7.44 -51.93 -0.39 1.60 16 45 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.08 1.67 2.46 -52.45 -0.13 1.54 16 47 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 50 H 0.08 1.58 6.98 -51.93 -0.36 1.21 16 51 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 52 H 0.25 6.87 8.31 -40.82 -0.34 6.54 16 LS Contribution 389.45 15.07 5.87 5.87 Total: -1.00 -31.25 389.45 -9.23 -40.48 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -8.59 Total: 5.03 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -1.60 Total: 1.70 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: 0.02 Total: -57.31 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.09 Total: -11.85 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.25 -9.23 -40.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039617100.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.474 kcal (2) G-P(sol) polarization free energy of solvation -31.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.39 seconds