Wall clock time and date at job start Wed Apr 1 2020 04:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46709 * 2 1 4 4 C 1.52997 * 109.47223 * 119.99711 * 2 1 3 5 5 N 1.46498 * 109.47440 * 240.00094 * 2 1 3 6 6 C 1.34264 * 125.75247 * 74.99599 * 5 2 1 7 7 C 1.38043 * 107.41752 * 179.97438 * 6 5 2 8 8 C 1.47428 * 126.41338 * 180.02562 * 7 6 5 9 9 O 1.21598 * 120.00094 * 35.16537 * 8 7 6 10 10 N 1.34780 * 119.99742 * 215.16763 * 8 7 6 11 11 C 1.46946 * 120.44406 * 6.14059 * 10 8 7 12 12 C 1.54062 * 108.30097 * 125.71810 * 11 10 8 13 13 H 1.09000 * 110.52578 * 172.86765 * 12 11 10 14 14 C 1.53365 * 108.83881 * 294.51538 * 12 11 10 15 15 C 1.53009 * 109.25208 * 60.25550 * 14 12 11 16 16 C 1.53003 * 109.80015 * 60.57744 * 15 14 12 17 17 C 1.53365 * 109.27987 * 299.43965 * 16 15 14 18 18 H 1.08998 * 110.59536 * 178.09849 * 17 16 15 19 19 C 1.46942 * 120.44025 * 186.41428 * 10 8 7 20 20 N 1.47572 * 107.98055 * 56.33772 * 17 16 15 21 21 C 1.36940 * 121.60895 * 122.28209 * 20 17 16 22 22 H 1.07997 * 120.00009 * 152.22305 * 21 20 17 23 23 C 1.38810 * 119.99924 * 332.22530 * 21 20 17 24 24 N 1.31615 * 120.00081 * 340.66825 * 23 21 20 25 25 Si 1.86800 * 119.99857 * 160.66868 * 23 21 20 26 26 H 1.48501 * 109.47348 * 94.98396 * 25 23 21 27 27 H 1.48504 * 109.46954 * 214.98247 * 25 23 21 28 28 H 1.48499 * 109.47283 * 334.98234 * 25 23 21 29 29 C 1.41288 * 107.16814 * 0.02562 * 7 6 5 30 30 N 1.30453 * 108.02479 * 359.73756 * 29 7 6 31 31 H 1.09004 * 109.46405 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47309 * 60.00098 * 1 2 3 33 33 H 1.09000 * 109.47433 * 299.99522 * 1 2 3 34 34 H 1.09007 * 109.47359 * 60.00387 * 3 2 1 35 35 H 1.09002 * 109.46869 * 179.97438 * 3 2 1 36 36 H 1.08995 * 109.47534 * 300.00383 * 3 2 1 37 37 H 1.09004 * 109.47152 * 60.00798 * 4 2 1 38 38 H 1.09002 * 109.47406 * 180.02562 * 4 2 1 39 39 H 1.08997 * 109.47672 * 300.00172 * 4 2 1 40 40 H 1.08002 * 126.29206 * 359.95973 * 6 5 2 41 41 H 1.08995 * 109.62733 * 245.48843 * 11 10 8 42 42 H 1.09004 * 109.62119 * 6.04849 * 11 10 8 43 43 H 1.09002 * 109.50881 * 300.32096 * 14 12 11 44 44 H 1.08998 * 109.54613 * 180.21104 * 14 12 11 45 45 H 1.09002 * 109.41264 * 300.47438 * 15 14 12 46 46 H 1.09000 * 109.35824 * 180.64652 * 15 14 12 47 47 H 1.09003 * 109.49954 * 179.50153 * 16 15 14 48 48 H 1.08999 * 109.50755 * 59.38477 * 16 15 14 49 49 H 1.08998 * 109.62792 * 353.97086 * 19 10 8 50 50 H 1.09006 * 109.62561 * 114.54286 * 19 10 8 51 51 H 0.96998 * 120.00197 * 180.02562 * 24 23 21 52 52 H 1.08005 * 125.99026 * 180.02562 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 2.0184 -0.6906 -1.1961 6 6 2.0140 -0.1959 -2.4443 7 6 2.5574 -1.1579 -3.2720 8 6 2.7517 -1.0500 -4.7294 9 8 3.0468 0.0201 -5.2259 10 7 2.6024 -2.1375 -5.5114 11 6 2.1160 -3.4023 -4.9429 12 6 0.8944 -3.8623 -5.7611 13 1 0.5803 -4.8591 -5.4513 14 6 -0.2428 -2.8525 -5.5633 15 6 0.2146 -1.4759 -6.0500 16 6 0.5666 -1.5426 -7.5375 17 6 1.7065 -2.5476 -7.7435 18 1 1.9523 -2.6371 -8.8016 19 6 2.9293 -2.0759 -6.9427 20 7 1.2765 -3.8447 -7.1864 21 6 1.2342 -4.9774 -7.9549 22 1 1.3624 -5.9465 -7.4958 23 6 1.0266 -4.8798 -9.3239 24 7 0.5011 -3.7860 -9.8335 25 14 1.4930 -6.3010 -10.4429 26 1 0.3019 -7.1552 -10.6809 27 1 1.9877 -5.7693 -11.7382 28 1 2.5604 -7.1082 -9.7992 29 6 2.8923 -2.2651 -2.4607 30 7 2.5730 -1.9748 -1.2296 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 0.5137 0.8900 34 1 1.6766 1.9564 0.8901 35 1 3.1299 1.4426 0.0005 36 1 1.6765 1.9564 -0.8899 37 1 1.6768 -1.7489 1.2492 38 1 3.1300 -0.7208 1.2495 39 1 1.6767 -0.2074 2.1392 40 1 1.6517 0.7759 -2.7455 41 1 2.9023 -4.1551 -4.9988 42 1 1.8257 -3.2488 -3.9035 43 1 -0.5010 -2.7975 -4.5057 44 1 -1.1153 -3.1692 -6.1349 45 1 1.0922 -1.1646 -5.4835 46 1 -0.5884 -0.7543 -5.8996 47 1 0.8832 -0.5578 -7.8810 48 1 -0.3076 -1.8627 -8.1044 49 1 3.1742 -1.0502 -7.2184 50 1 3.7780 -2.7270 -7.1527 51 1 0.3557 -3.7180 -10.7901 52 1 3.3392 -3.1881 -2.7996 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039718411.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:22 Heat of formation + Delta-G solvation = 96.338771 kcal Electronic energy + Delta-G solvation = -32996.766681 eV Core-core repulsion = 28999.816126 eV Total energy + Delta-G solvation = -3996.950555 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 4.34 seconds Orbital eigenvalues (eV) -41.64130 -40.15185 -37.53874 -36.88588 -33.91417 -32.65449 -31.88720 -30.87093 -30.56090 -29.81118 -27.85951 -27.74340 -26.71323 -25.57067 -23.88000 -23.04109 -21.97792 -21.19802 -20.99629 -19.75605 -19.15745 -18.21624 -17.35732 -16.56439 -15.86610 -15.54209 -15.31339 -14.91492 -14.67368 -14.57253 -14.31851 -13.94715 -13.82235 -13.50659 -13.20791 -13.05017 -12.91392 -12.81782 -12.64003 -12.61580 -12.48976 -12.29111 -12.17175 -11.98537 -11.69871 -11.59263 -11.56609 -11.28788 -11.15471 -10.87936 -10.83127 -10.65412 -10.29407 -10.06639 -9.96669 -9.85180 -9.57275 -9.50905 -9.36482 -9.16499 -8.57701 -8.46898 -7.75717 -6.56366 -5.79665 -3.21891 1.66751 2.20417 2.32954 3.36632 3.43349 3.45311 3.47311 3.72796 4.07685 4.33306 4.43858 4.47644 4.67811 4.75160 5.03871 5.09011 5.12960 5.23867 5.24809 5.29277 5.35114 5.37970 5.39388 5.47902 5.58114 5.70799 5.75660 5.76278 5.77483 5.86039 5.87494 5.96348 6.00774 6.12523 6.25494 6.37914 6.44745 6.54212 6.57871 6.59861 6.69753 6.84013 6.84776 6.99205 7.02302 7.15506 7.24383 7.56561 7.58081 7.67312 7.79067 8.03189 8.39898 8.69852 9.16451 9.79206 10.41658 11.26971 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022994 B = 0.003005 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.442657 B = 9316.306274 C = 9498.271249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.178 3.822 3 C -0.162 4.162 4 C -0.142 4.142 5 N -0.353 5.353 6 C 0.116 3.884 7 C -0.279 4.279 8 C 0.592 3.408 9 O -0.560 6.560 10 N -0.584 5.584 11 C 0.089 3.911 12 C 0.153 3.847 13 H 0.076 0.924 14 C -0.120 4.120 15 C -0.138 4.138 16 C -0.112 4.112 17 C 0.180 3.820 18 H 0.113 0.887 19 C 0.093 3.907 20 N -0.578 5.578 21 C -0.251 4.251 22 H 0.066 0.934 23 C 0.005 3.995 24 N -0.894 5.894 25 Si 0.899 3.101 26 H -0.289 1.289 27 H -0.290 1.290 28 H -0.279 1.279 29 C 0.078 3.922 30 N -0.296 5.296 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.179 0.821 41 H 0.064 0.936 42 H 0.081 0.919 43 H 0.036 0.964 44 H 0.056 0.944 45 H 0.083 0.917 46 H 0.026 0.974 47 H 0.036 0.964 48 H 0.070 0.930 49 H 0.080 0.920 50 H 0.060 0.940 51 H 0.253 0.747 52 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.458 7.873 20.041 21.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.096 3.904 3 C -0.220 4.220 4 C -0.200 4.200 5 N -0.134 5.134 6 C -0.034 4.034 7 C -0.294 4.294 8 C 0.381 3.619 9 O -0.440 6.440 10 N -0.316 5.316 11 C -0.036 4.036 12 C 0.045 3.955 13 H 0.094 0.906 14 C -0.160 4.160 15 C -0.176 4.176 16 C -0.151 4.151 17 C 0.073 3.927 18 H 0.130 0.870 19 C -0.030 4.030 20 N -0.299 5.299 21 C -0.380 4.380 22 H 0.084 0.916 23 C -0.194 4.194 24 N -0.538 5.538 25 Si 0.729 3.271 26 H -0.216 1.216 27 H -0.216 1.216 28 H -0.205 1.205 29 C -0.109 4.109 30 N -0.116 5.116 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.196 0.804 41 H 0.082 0.918 42 H 0.099 0.901 43 H 0.055 0.945 44 H 0.075 0.925 45 H 0.100 0.900 46 H 0.045 0.955 47 H 0.055 0.945 48 H 0.089 0.911 49 H 0.098 0.902 50 H 0.078 0.922 51 H 0.064 0.936 52 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 1.515 8.064 20.916 22.468 hybrid contribution -0.023 -0.474 -1.624 1.692 sum 1.492 7.590 19.292 20.785 Atomic orbital electron populations 1.22282 0.92680 1.03631 1.03314 1.20800 0.94570 0.91919 0.83158 1.22281 1.02526 0.93530 1.03695 1.21904 1.02220 1.01413 0.94468 1.48714 1.46407 1.12184 1.06100 1.22703 0.97653 0.98972 0.84096 1.20318 1.17154 0.96831 0.95057 1.17066 0.76399 0.83751 0.84635 1.90739 1.50331 1.27570 1.75353 1.47953 1.63331 1.10615 1.09658 1.22739 0.98200 0.85080 0.97600 1.21266 0.90783 0.96667 0.86802 0.90616 1.21919 0.99314 0.96724 0.97999 1.22101 1.00841 0.95866 0.98783 1.21768 1.01114 0.97521 0.94653 1.21083 0.89231 0.84208 0.98172 0.87000 1.22507 0.99830 1.01554 0.79099 1.44410 1.74972 1.05922 1.04617 1.19114 1.43466 0.86133 0.89289 0.91583 1.25000 0.99125 0.97201 0.98101 1.70010 1.44307 1.27691 1.11766 0.86337 0.78306 0.82001 0.80437 1.21639 1.21625 1.20473 1.24146 0.98385 0.98655 0.89693 1.77101 1.18183 0.95548 1.20750 0.91344 0.91600 0.90297 0.89964 0.91347 0.91359 0.90826 0.91583 0.90971 0.80443 0.91773 0.90140 0.94493 0.92474 0.89952 0.95489 0.94535 0.91090 0.90153 0.92210 0.93643 0.79310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 8.72 37.16 0.32 -0.79 16 2 C 0.18 1.42 1.23 -131.82 -0.16 1.26 16 3 C -0.16 -1.02 8.28 37.16 0.31 -0.72 16 4 C -0.14 -1.03 8.07 37.16 0.30 -0.73 16 5 N -0.35 -4.02 3.41 -48.11 -0.16 -4.18 16 6 C 0.12 1.48 10.54 -16.56 -0.17 1.31 16 7 C -0.28 -4.16 5.36 -105.07 -0.56 -4.73 16 8 C 0.59 10.66 4.95 -12.52 -0.06 10.60 16 9 O -0.56 -11.68 16.39 5.28 0.09 -11.59 16 10 N -0.58 -10.60 1.64 -173.22 -0.28 -10.88 16 11 C 0.09 1.48 4.83 -3.24 -0.02 1.46 16 12 C 0.15 3.01 3.61 -66.60 -0.24 2.77 16 13 H 0.08 1.46 8.03 -51.93 -0.42 1.04 16 14 C -0.12 -2.33 5.59 -26.54 -0.15 -2.48 16 15 C -0.14 -2.76 5.55 -26.72 -0.15 -2.91 16 16 C -0.11 -2.48 5.56 -26.54 -0.15 -2.63 16 17 C 0.18 4.11 2.65 -66.85 -0.18 3.93 16 18 H 0.11 2.89 5.95 -51.93 -0.31 2.58 16 19 C 0.09 1.88 5.89 -3.49 -0.02 1.86 16 20 N -0.58 -13.54 2.53 -155.16 -0.39 -13.93 16 21 C -0.25 -6.49 9.71 -15.06 -0.15 -6.64 16 22 H 0.07 1.69 7.90 -52.49 -0.41 1.27 16 23 C 0.00 0.13 4.96 -17.43 -0.09 0.04 16 24 N -0.89 -24.69 11.05 55.49 0.61 -24.07 16 25 Si 0.90 21.02 29.60 -169.99 -5.03 15.99 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 28 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 29 C 0.08 1.04 9.57 -16.98 -0.16 0.88 16 30 N -0.30 -3.85 11.56 30.86 0.36 -3.50 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.43 7.34 -51.93 -0.38 0.05 16 37 H 0.07 0.62 8.04 -51.93 -0.42 0.20 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.18 1.97 7.53 -52.49 -0.40 1.57 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.08 1.18 4.48 -51.93 -0.23 0.95 16 43 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.08 1.61 2.48 -52.42 -0.13 1.48 16 46 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 48 H 0.07 1.78 7.97 -51.93 -0.41 1.37 16 49 H 0.08 1.64 6.98 -51.93 -0.36 1.28 16 50 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 51 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 52 H 0.19 2.19 6.96 -52.48 -0.37 1.82 16 LS Contribution 390.37 15.07 5.88 5.88 Total: -1.00 -30.88 390.37 -8.72 -39.61 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -8.47 Total: 4.18 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -1.32 Total: 2.49 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: 0.13 Total: -56.56 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.09 Total: -11.59 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 15.99 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.88 -8.72 -39.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039718411.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.945 kcal (2) G-P(sol) polarization free energy of solvation -30.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.34 seconds