Wall clock time and date at job start Wed Apr 1 2020 04:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47442 * 2 1 4 4 C 1.53000 * 109.47180 * 120.00132 * 2 1 3 5 5 N 1.46501 * 109.47082 * 174.99783 * 4 2 1 6 6 C 1.34250 * 125.75307 * 124.99928 * 5 4 2 7 7 C 1.38045 * 107.42073 * 179.97438 * 6 5 4 8 8 C 1.47429 * 126.41888 * 179.97438 * 7 6 5 9 9 O 1.21608 * 119.99771 * 329.09642 * 8 7 6 10 10 N 1.34776 * 119.99991 * 149.09543 * 8 7 6 11 11 C 1.46946 * 120.44158 * 173.58261 * 10 8 7 12 12 C 1.53598 * 108.52249 * 125.71620 * 11 10 8 13 13 H 1.09000 * 110.60105 * 172.17382 * 12 11 10 14 14 C 1.53363 * 108.68721 * 294.37657 * 12 11 10 15 15 C 1.53466 * 109.22074 * 60.41419 * 14 12 11 16 16 C 1.53016 * 109.91839 * 60.30244 * 15 14 12 17 17 C 1.53371 * 109.24903 * 299.64408 * 16 15 14 18 18 H 1.08994 * 111.08741 * 177.84807 * 17 16 15 19 19 C 1.46949 * 120.44306 * 353.55573 * 10 8 7 20 20 N 1.47568 * 107.98280 * 56.39199 * 17 16 15 21 21 C 1.36942 * 121.60760 * 122.27551 * 20 17 16 22 22 H 1.08002 * 119.99909 * 155.30093 * 21 20 17 23 23 C 1.38809 * 119.99917 * 335.29526 * 21 20 17 24 24 N 1.31613 * 120.00151 * 338.55301 * 23 21 20 25 25 Si 1.86800 * 119.99724 * 158.54762 * 23 21 20 26 26 H 1.48504 * 109.47011 * 85.00399 * 25 23 21 27 27 H 1.48497 * 109.47341 * 204.99879 * 25 23 21 28 28 H 1.48498 * 109.47426 * 325.00400 * 25 23 21 29 29 C 1.41295 * 107.16684 * 0.24691 * 7 6 5 30 30 N 1.30443 * 108.02213 * 359.58586 * 29 7 6 31 31 H 1.08996 * 109.46764 * 300.00067 * 1 2 3 32 32 H 1.09002 * 109.46607 * 59.99459 * 1 2 3 33 33 H 1.08992 * 109.47011 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.46909 * 240.00560 * 2 1 3 35 35 H 1.09005 * 109.47369 * 300.00603 * 3 2 1 36 36 H 1.09002 * 109.46829 * 59.99627 * 3 2 1 37 37 H 1.08992 * 109.47460 * 180.02562 * 3 2 1 38 38 H 1.09004 * 109.46956 * 55.00211 * 4 2 1 39 39 H 1.08997 * 109.46934 * 294.99782 * 4 2 1 40 40 H 1.08003 * 126.29321 * 359.97438 * 6 5 4 41 41 H 1.08994 * 109.63349 * 6.00752 * 11 10 8 42 42 H 1.09000 * 109.78965 * 245.52142 * 11 10 8 43 43 H 1.09006 * 109.50630 * 180.24462 * 14 12 11 44 44 H 1.08998 * 109.50800 * 300.36655 * 14 12 11 45 45 H 1.08993 * 109.16995 * 300.28326 * 15 14 12 46 46 H 1.08992 * 109.48929 * 180.52204 * 15 14 12 47 47 H 1.08998 * 109.50859 * 179.70994 * 16 15 14 48 48 H 1.09003 * 109.50647 * 59.57435 * 16 15 14 49 49 H 1.08998 * 109.62222 * 353.98234 * 19 10 8 50 50 H 1.09002 * 109.61841 * 114.53835 * 19 10 8 51 51 H 0.96999 * 119.99971 * 179.97438 * 24 23 21 52 52 H 1.07995 * 125.98732 * 179.73013 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.3560 -0.3964 2.1312 7 6 5.6324 -0.6848 1.6915 8 6 6.8902 -0.3912 2.4023 9 8 6.9645 0.5796 3.1309 10 7 7.9577 -1.1986 2.2445 11 6 9.2554 -0.8409 2.8340 12 6 9.7356 -2.0121 3.7040 13 1 10.7560 -1.8417 4.0472 14 6 8.7743 -2.1708 4.8884 15 6 7.3645 -2.4658 4.3588 16 6 7.3741 -3.7608 3.5438 17 6 8.3326 -3.6041 2.3568 18 1 8.3914 -4.5246 1.7761 19 6 7.8393 -2.4488 1.4814 20 7 9.6601 -3.2395 2.8883 21 6 10.7695 -4.0004 2.6320 22 1 11.7515 -3.5522 2.6670 23 6 10.6319 -5.3477 2.3275 24 7 9.5422 -5.9947 2.6829 25 14 11.9931 -6.2423 1.4131 26 1 13.0150 -6.7121 2.3829 27 1 11.4220 -7.4082 0.6923 28 1 12.6246 -5.3179 0.4375 29 6 5.5079 -1.3085 0.4297 30 7 4.2378 -1.3925 0.1447 31 1 -0.3633 0.5138 0.8900 32 1 -0.3632 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8934 -0.5138 -0.8901 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 3.1301 1.4425 -0.0005 38 1 1.6055 -1.7199 1.2951 39 1 1.7517 -0.1583 2.1369 40 1 4.0941 0.0864 3.0611 41 1 9.1443 0.0513 3.4501 42 1 9.9805 -0.6513 2.0425 43 1 9.1056 -2.9968 5.5178 44 1 8.7608 -1.2504 5.4721 45 1 7.0406 -1.6408 3.7243 46 1 6.6757 -2.5703 5.1970 47 1 6.3691 -3.9665 3.1754 48 1 7.7072 -4.5852 4.1743 49 1 6.7971 -2.6137 1.2084 50 1 8.4510 -2.3874 0.5812 51 1 9.4459 -6.9361 2.4697 52 1 6.3216 -1.6568 -0.1890 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039956744.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:37 Heat of formation + Delta-G solvation = 93.483875 kcal Electronic energy + Delta-G solvation = -32661.968146 eV Core-core repulsion = 28664.893793 eV Total energy + Delta-G solvation = -3997.074353 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.54828 -40.12063 -37.48318 -36.70062 -33.91905 -32.89182 -32.21560 -31.73947 -30.30389 -30.10921 -27.56988 -27.22936 -26.49354 -25.35500 -23.84569 -22.27547 -21.82520 -21.31889 -20.81835 -20.26391 -19.26899 -18.21516 -17.60261 -16.56444 -15.99912 -15.65578 -15.50334 -15.04784 -14.69027 -14.56621 -14.46126 -13.96346 -13.76837 -13.46468 -13.26869 -13.21054 -13.04579 -12.89507 -12.74096 -12.58032 -12.36124 -12.33432 -11.97329 -11.70745 -11.58010 -11.41143 -11.28273 -11.26252 -11.18460 -10.84533 -10.81769 -10.63800 -10.30925 -10.05331 -9.99299 -9.90274 -9.59239 -9.49912 -9.30855 -9.22428 -8.56482 -8.46928 -7.77268 -6.61456 -5.81251 -3.19355 1.66684 2.29176 2.34301 3.36462 3.44326 3.44725 3.47543 3.73288 4.13311 4.40278 4.47479 4.56653 4.71158 4.80166 4.93151 5.08401 5.18255 5.21127 5.25106 5.25544 5.34390 5.43455 5.46997 5.55947 5.68044 5.69984 5.80198 5.82488 5.88356 5.90299 5.93480 5.94784 6.02482 6.09480 6.24330 6.34029 6.45047 6.48226 6.53376 6.58540 6.70482 6.80293 6.82252 6.95352 7.07716 7.15407 7.20084 7.53127 7.58026 7.60902 7.76276 8.02226 8.36700 8.67732 9.14935 9.78625 10.39440 11.25521 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017262 B = 0.003064 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.662909 B = 9135.188402 C = 9852.670169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 C -0.148 4.148 4 C 0.135 3.865 5 N -0.360 5.360 6 C 0.116 3.884 7 C -0.280 4.280 8 C 0.594 3.406 9 O -0.564 6.564 10 N -0.584 5.584 11 C 0.103 3.897 12 C 0.152 3.848 13 H 0.077 0.923 14 C -0.120 4.120 15 C -0.138 4.138 16 C -0.111 4.111 17 C 0.176 3.824 18 H 0.118 0.882 19 C 0.077 3.923 20 N -0.579 5.579 21 C -0.247 4.247 22 H 0.068 0.932 23 C 0.002 3.998 24 N -0.895 5.895 25 Si 0.898 3.102 26 H -0.288 1.288 27 H -0.291 1.291 28 H -0.281 1.281 29 C 0.081 3.919 30 N -0.296 5.296 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.088 0.912 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.181 0.819 41 H 0.081 0.919 42 H 0.062 0.938 43 H 0.055 0.945 44 H 0.042 0.958 45 H 0.082 0.918 46 H 0.027 0.973 47 H 0.032 0.968 48 H 0.070 0.930 49 H 0.082 0.918 50 H 0.062 0.938 51 H 0.253 0.747 52 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.868 10.916 -3.718 19.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 C -0.205 4.205 4 C 0.014 3.986 5 N -0.139 5.139 6 C -0.034 4.034 7 C -0.295 4.295 8 C 0.384 3.616 9 O -0.445 6.445 10 N -0.316 5.316 11 C -0.021 4.021 12 C 0.044 3.956 13 H 0.095 0.905 14 C -0.159 4.159 15 C -0.176 4.176 16 C -0.151 4.151 17 C 0.069 3.931 18 H 0.135 0.865 19 C -0.047 4.047 20 N -0.300 5.300 21 C -0.376 4.376 22 H 0.086 0.914 23 C -0.197 4.197 24 N -0.540 5.540 25 Si 0.728 3.272 26 H -0.215 1.215 27 H -0.217 1.217 28 H -0.207 1.207 29 C -0.106 4.106 30 N -0.116 5.116 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.106 0.894 39 H 0.115 0.885 40 H 0.198 0.802 41 H 0.100 0.900 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.060 0.940 45 H 0.100 0.900 46 H 0.046 0.954 47 H 0.051 0.949 48 H 0.089 0.911 49 H 0.100 0.900 50 H 0.080 0.920 51 H 0.063 0.937 52 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -16.835 10.829 -4.235 20.460 hybrid contribution 1.281 -0.512 0.289 1.410 sum -15.554 10.317 -3.946 19.077 Atomic orbital electron populations 1.21788 0.93897 1.02242 1.02406 1.21425 0.96146 0.96963 0.98275 1.21834 1.01600 0.95178 1.01916 1.21931 0.74270 1.02370 1.00042 1.48439 1.06612 1.44557 1.14326 1.22826 0.89036 0.96682 0.94900 1.20284 0.93714 1.15983 0.99502 1.17042 0.82476 0.81824 0.80281 1.90729 1.83885 1.29758 1.40100 1.47930 1.09655 1.21585 1.52395 1.22200 0.83260 0.99124 0.97510 1.21222 0.96953 0.87396 0.90024 0.90525 1.21968 0.96403 0.99511 0.98046 1.22176 0.96206 1.00193 0.99031 1.21784 0.97244 0.97098 0.98924 1.21079 0.83969 0.95316 0.92769 0.86510 1.22916 1.01129 0.85139 0.95492 1.44445 1.04952 1.24747 1.55871 1.19135 0.86627 0.89893 1.41932 0.91427 1.24900 0.97432 0.95877 1.01488 1.70016 1.28090 1.08742 1.47116 0.86380 0.81607 0.79131 0.80050 1.21521 1.21653 1.20671 1.24245 0.94419 0.96535 0.95409 1.77126 1.04268 1.20283 1.09952 0.92370 0.91922 0.92220 0.89404 0.92309 0.92622 0.92481 0.89390 0.88510 0.80169 0.90020 0.92004 0.92622 0.93951 0.89983 0.95426 0.94895 0.91137 0.90028 0.91962 0.93665 0.79054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.19 37.16 0.34 -0.42 16 2 C -0.11 -0.79 3.00 -90.62 -0.27 -1.07 16 3 C -0.15 -1.16 9.08 37.16 0.34 -0.82 16 4 C 0.13 1.05 5.88 -4.04 -0.02 1.02 16 5 N -0.36 -4.14 3.10 -60.81 -0.19 -4.33 16 6 C 0.12 1.47 11.37 -16.57 -0.19 1.29 16 7 C -0.28 -4.24 5.48 -105.06 -0.58 -4.82 16 8 C 0.59 10.57 4.97 -12.52 -0.06 10.51 16 9 O -0.56 -11.36 16.36 5.27 0.09 -11.27 16 10 N -0.58 -10.52 1.65 -173.80 -0.29 -10.80 16 11 C 0.10 1.90 5.90 -3.49 -0.02 1.88 16 12 C 0.15 3.10 3.62 -66.85 -0.24 2.86 16 13 H 0.08 1.53 8.01 -51.93 -0.42 1.12 16 14 C -0.12 -2.41 5.61 -26.30 -0.15 -2.56 16 15 C -0.14 -2.74 5.57 -26.48 -0.15 -2.89 16 16 C -0.11 -2.37 5.58 -26.53 -0.15 -2.52 16 17 C 0.18 3.84 2.68 -67.09 -0.18 3.66 16 18 H 0.12 2.90 5.75 -51.93 -0.30 2.60 16 19 C 0.08 1.40 4.67 -3.74 -0.02 1.38 16 20 N -0.58 -13.48 2.55 -155.71 -0.40 -13.88 16 21 C -0.25 -6.36 9.71 -15.06 -0.15 -6.51 16 22 H 0.07 1.73 7.92 -52.49 -0.42 1.31 16 23 C 0.00 0.04 4.93 -17.43 -0.09 -0.05 16 24 N -0.90 -24.33 11.16 55.49 0.62 -23.71 16 25 Si 0.90 20.86 29.60 -169.99 -5.03 15.82 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 29 C 0.08 1.14 9.56 -16.98 -0.16 0.97 16 30 N -0.30 -4.03 12.24 30.86 0.38 -3.66 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.09 0.80 8.04 -51.93 -0.42 0.38 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.58 7.75 -51.93 -0.40 0.18 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.10 0.54 8.06 -51.93 -0.42 0.12 16 40 H 0.18 1.90 8.06 -52.48 -0.42 1.47 16 41 H 0.08 1.49 6.98 -51.93 -0.36 1.13 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.08 1.60 2.47 -52.45 -0.13 1.47 16 46 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.07 1.73 8.14 -51.93 -0.42 1.30 16 49 H 0.08 1.34 4.26 -51.93 -0.22 1.12 16 50 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 51 H 0.25 6.75 8.31 -40.82 -0.34 6.42 16 52 H 0.19 2.43 6.63 -52.49 -0.35 2.08 16 LS Contribution 392.88 15.07 5.92 5.92 Total: -1.00 -30.42 392.88 -9.12 -39.55 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -8.48 Total: 4.44 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -1.74 Total: 1.92 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: 0.13 Total: -56.37 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.09 Total: -11.27 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.82 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.42 -9.12 -39.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039956744.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.030 kcal (2) G-P(sol) polarization free energy of solvation -30.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds