Wall clock time and date at job start Wed Apr 1 2020 04:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47103 * 2 1 4 4 C 1.53000 * 109.47376 * 120.00219 * 2 1 3 5 5 N 1.46501 * 109.46871 * 66.37443 * 4 2 1 6 6 C 1.35032 * 124.88461 * 83.61701 * 5 4 2 7 7 C 1.35363 * 107.22858 * 179.97438 * 6 5 4 8 8 C 1.41506 * 105.50370 * 359.97438 * 7 6 5 9 9 C 1.47703 * 126.51986 * 179.97438 * 8 7 6 10 10 O 1.21577 * 120.00057 * 5.43059 * 9 8 7 11 11 N 1.34779 * 120.00091 * 185.42679 * 9 8 7 12 12 C 1.47560 * 125.67326 * 353.72657 * 11 9 8 13 13 C 1.55438 * 104.87699 * 156.03094 * 12 11 9 14 14 C 1.53657 * 101.31424 * 35.83047 * 13 12 11 15 15 C 1.53660 * 111.41535 * 87.05740 * 14 13 12 16 16 C 1.55185 * 101.41477 * 155.02518 * 15 14 13 17 17 N 1.47559 * 105.01051 * 324.51398 * 16 15 14 18 18 C 1.36941 * 125.67404 * 203.83232 * 17 16 15 19 19 H 1.07994 * 119.99907 * 167.91745 * 18 17 16 20 20 C 1.38809 * 119.99610 * 347.90764 * 18 17 16 21 21 N 1.31618 * 120.00646 * 1.32070 * 20 18 17 22 22 Si 1.86806 * 119.99787 * 181.31439 * 20 18 17 23 23 H 1.48504 * 109.47067 * 94.98510 * 22 20 18 24 24 H 1.48497 * 109.47115 * 214.98683 * 22 20 18 25 25 H 1.48504 * 109.46808 * 334.98956 * 22 20 18 26 26 C 1.47409 * 108.65228 * 23.85960 * 17 16 15 27 27 C 1.47409 * 125.67135 * 174.03310 * 11 9 8 28 28 N 1.28469 * 124.88129 * 263.85820 * 5 4 2 29 29 H 1.09001 * 109.47134 * 63.59780 * 1 2 3 30 30 H 1.08997 * 109.46653 * 183.59592 * 1 2 3 31 31 H 1.08999 * 109.47103 * 303.59821 * 1 2 3 32 32 H 1.09007 * 109.46953 * 240.00600 * 2 1 3 33 33 H 1.08998 * 109.46912 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47013 * 300.00366 * 3 2 1 35 35 H 1.09004 * 109.46955 * 59.99976 * 3 2 1 36 36 H 1.08999 * 109.46798 * 306.37218 * 4 2 1 37 37 H 1.08995 * 109.47028 * 186.37720 * 4 2 1 38 38 H 1.07994 * 126.38489 * 359.93276 * 6 5 4 39 39 H 1.07999 * 127.24996 * 180.02562 * 7 6 5 40 40 H 1.09002 * 110.33262 * 275.01818 * 12 11 9 41 41 H 1.09000 * 110.33339 * 37.25931 * 12 11 9 42 42 H 1.08998 * 111.25457 * 277.75336 * 13 12 11 43 43 H 1.09005 * 110.94583 * 153.76570 * 13 12 11 44 44 H 1.08998 * 111.04046 * 273.06379 * 15 14 13 45 45 H 1.08999 * 111.03436 * 36.99991 * 15 14 13 46 46 H 1.09003 * 110.33442 * 205.62218 * 16 15 14 47 47 H 1.09005 * 110.41861 * 83.43549 * 16 15 14 48 48 H 0.96996 * 120.00449 * 180.02562 * 21 20 18 49 49 H 1.09001 * 109.98592 * 238.54049 * 26 17 16 50 50 H 1.08994 * 109.98439 * 117.23514 * 26 17 16 51 51 H 1.09001 * 109.98614 * 301.45263 * 27 11 9 52 52 H 1.08993 * 109.98609 * 62.72697 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6810 -2.1397 1.1749 6 6 2.3883 -3.0819 0.5151 7 6 1.7401 -4.2587 0.6802 8 6 0.6090 -3.9591 1.4759 9 6 -0.4206 -4.9136 1.9349 10 8 -0.2896 -6.1019 1.7138 11 7 -1.5053 -4.4672 2.5988 12 6 -1.7287 -3.0794 3.0476 13 6 -3.2722 -2.9433 3.1707 14 6 -3.6588 -4.3420 3.6760 15 6 -3.5823 -4.4259 5.2084 16 6 -4.5804 -5.5770 5.5032 17 7 -5.6515 -5.4203 4.5004 18 6 -6.9359 -5.8783 4.6256 19 1 -7.6962 -5.5502 3.9323 20 6 -7.2606 -6.7646 5.6434 21 7 -6.3399 -7.1445 6.5039 22 14 -9.0043 -7.4180 5.7920 23 1 -9.1024 -8.7287 5.1007 24 1 -9.3486 -7.5880 7.2265 25 1 -9.9480 -6.4568 5.1668 26 6 -5.1087 -4.6892 3.3411 27 6 -2.6628 -5.2856 3.0028 28 7 0.6454 -2.6651 1.7244 29 1 -0.3633 0.4570 -0.9205 30 1 -0.3632 -1.0256 0.0645 31 1 -0.3633 0.5687 0.8560 32 1 1.8933 -0.5138 -0.8901 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.5866 -0.2775 2.1355 37 1 3.1240 -0.6235 1.3080 38 1 3.3006 -2.9255 -0.0412 39 1 2.0264 -5.2233 0.2879 40 1 -1.2528 -2.9126 4.0140 41 1 -1.3447 -2.3759 2.3088 42 1 -3.7291 -2.7368 2.2029 43 1 -3.5390 -2.1769 3.8984 44 1 -2.5761 -4.6869 5.5363 45 1 -3.9126 -3.4944 5.6682 46 1 -4.9865 -5.4778 6.5099 47 1 -4.0910 -6.5440 5.3865 48 1 -6.5667 -7.7641 7.2148 49 1 -5.6813 -3.7768 3.1747 50 1 -5.1452 -5.3196 2.4528 51 1 -3.1190 -5.7445 2.1257 52 1 -2.3467 -6.0571 3.7049 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041330573.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:53 Heat of formation + Delta-G solvation = 74.090681 kcal Electronic energy + Delta-G solvation = -31133.268835 eV Core-core repulsion = 27135.353530 eV Total energy + Delta-G solvation = -3997.915305 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.85861 -40.01631 -38.18647 -36.94514 -35.56395 -32.80398 -32.28708 -31.00235 -30.38860 -29.02403 -28.36742 -27.68667 -27.28987 -25.56211 -24.16470 -22.56544 -22.15777 -21.89749 -20.58339 -20.27214 -19.27047 -18.70149 -17.57655 -16.88533 -16.50390 -16.40051 -15.64443 -15.51797 -15.00610 -14.73710 -14.35773 -14.32032 -14.14556 -13.77540 -13.75747 -13.35687 -13.11847 -12.98393 -12.83933 -12.63419 -12.54670 -12.40958 -11.94241 -11.84907 -11.79942 -11.62573 -11.54116 -11.36284 -11.34464 -11.17325 -10.88923 -10.75178 -10.70385 -10.17709 -10.05816 -9.92562 -9.79166 -9.68621 -9.54507 -9.39559 -9.21724 -8.54366 -8.37215 -6.72676 -5.67621 -3.03066 1.51901 2.00188 2.18697 3.15807 3.43529 3.48628 3.49726 3.50524 3.96455 4.13237 4.35129 4.41047 4.53684 4.58152 4.66885 4.80719 4.85460 4.94572 5.01557 5.09856 5.13144 5.17826 5.31208 5.38775 5.46240 5.51078 5.51871 5.53149 5.55693 5.60635 5.66673 5.77073 5.85011 5.94347 5.97424 6.07625 6.13392 6.21019 6.25893 6.33684 6.38950 6.47328 6.58395 6.61605 6.71345 6.82410 6.91077 7.59839 7.64983 7.66101 7.77744 7.86390 8.33357 8.33975 9.25727 9.86474 10.55138 11.43760 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021280 B = 0.002265 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.488155 B =12358.944078 C =13108.157970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C -0.145 4.145 4 C 0.121 3.879 5 N -0.282 5.282 6 C -0.021 4.021 7 C -0.179 4.179 8 C -0.008 4.008 9 C 0.612 3.388 10 O -0.537 6.537 11 N -0.604 5.604 12 C 0.104 3.896 13 C -0.119 4.119 14 C -0.080 4.080 15 C -0.133 4.133 16 C 0.171 3.829 17 N -0.604 5.604 18 C -0.226 4.226 19 H 0.075 0.925 20 C -0.008 4.008 21 N -0.919 5.919 22 Si 0.911 3.089 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.151 3.849 27 C 0.129 3.871 28 N -0.254 5.254 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.179 0.821 39 H 0.161 0.839 40 H 0.066 0.934 41 H 0.091 0.909 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.059 0.941 45 H 0.063 0.937 46 H 0.077 0.923 47 H 0.023 0.977 48 H 0.252 0.748 49 H 0.029 0.971 50 H 0.025 0.975 51 H 0.071 0.929 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.013 18.661 -12.477 30.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.131 4.131 3 C -0.203 4.203 4 C 0.001 3.999 5 N -0.070 5.070 6 C -0.163 4.163 7 C -0.207 4.207 8 C -0.168 4.168 9 C 0.398 3.602 10 O -0.412 6.412 11 N -0.337 5.337 12 C -0.019 4.019 13 C -0.157 4.157 14 C -0.081 4.081 15 C -0.171 4.171 16 C 0.046 3.954 17 N -0.331 5.331 18 C -0.355 4.355 19 H 0.093 0.907 20 C -0.204 4.204 21 N -0.567 5.567 22 Si 0.742 3.258 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.206 1.206 26 C 0.025 3.975 27 C 0.008 3.992 28 N -0.090 5.090 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.122 0.878 37 H 0.117 0.883 38 H 0.196 0.804 39 H 0.178 0.822 40 H 0.084 0.916 41 H 0.109 0.891 42 H 0.091 0.909 43 H 0.102 0.898 44 H 0.078 0.922 45 H 0.082 0.918 46 H 0.095 0.905 47 H 0.041 0.959 48 H 0.063 0.937 49 H 0.046 0.954 50 H 0.043 0.957 51 H 0.089 0.911 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 20.475 18.817 -11.927 30.258 hybrid contribution -0.343 -1.016 -0.355 1.130 sum 20.133 17.801 -12.282 29.547 Atomic orbital electron populations 1.21865 0.93805 1.02876 1.02255 1.21535 0.97626 0.96782 0.97194 1.21783 1.01082 0.94573 1.02883 1.22178 1.01535 0.75198 1.00986 1.45607 1.16522 1.08834 1.36047 1.22781 1.01310 0.88753 1.03489 1.21764 0.95878 0.99250 1.03798 1.21935 0.99261 0.90553 1.05088 1.16535 0.79589 0.86252 0.77806 1.90804 1.76979 1.15536 1.57886 1.48480 1.18694 1.11527 1.55001 1.22601 0.96184 0.82874 1.00195 1.22719 0.94047 0.97103 1.01840 1.21515 0.95739 0.93741 0.97095 1.22922 1.00170 1.01452 0.92603 1.21560 0.86464 0.92268 0.95067 1.44597 1.08275 1.65969 1.14210 1.19025 0.84236 1.20030 1.12202 0.90671 1.24870 0.97939 0.98897 0.98684 1.69927 1.31755 1.36943 1.18026 0.86114 0.83828 0.78998 0.76909 1.21619 1.21764 1.20638 1.21097 0.89554 0.95230 0.91633 1.21889 0.84492 0.93512 0.99323 1.73644 1.07116 1.09649 1.18547 0.92325 0.92042 0.92028 0.90388 0.92265 0.91709 0.91982 0.87754 0.88278 0.80432 0.82178 0.91603 0.89126 0.90853 0.89828 0.92215 0.91797 0.90507 0.95905 0.93736 0.95353 0.95742 0.91113 0.90756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.13 37.16 0.34 -0.63 16 2 C -0.11 -0.50 3.11 -90.62 -0.28 -0.79 16 3 C -0.15 -0.43 9.19 37.16 0.34 -0.08 16 4 C 0.12 0.59 5.65 -4.04 -0.02 0.57 16 5 N -0.28 -2.43 2.90 -61.33 -0.18 -2.61 16 6 C -0.02 -0.17 11.46 -17.17 -0.20 -0.37 16 7 C -0.18 -2.05 10.81 -39.36 -0.43 -2.48 16 8 C -0.01 -0.12 6.97 -82.76 -0.58 -0.69 16 9 C 0.61 10.49 7.84 -12.39 -0.10 10.40 16 10 O -0.54 -10.90 17.27 5.30 0.09 -10.80 16 11 N -0.60 -9.82 3.34 -171.85 -0.57 -10.40 16 12 C 0.10 1.40 6.25 -2.17 -0.01 1.38 16 13 C -0.12 -1.64 5.94 -25.09 -0.15 -1.79 16 14 C -0.08 -1.40 0.61 -154.02 -0.09 -1.49 16 15 C -0.13 -2.51 5.85 -25.23 -0.15 -2.65 16 16 C 0.17 4.20 5.44 -2.31 -0.01 4.19 16 17 N -0.60 -15.64 3.41 -170.41 -0.58 -16.22 16 18 C -0.23 -6.40 10.25 -15.06 -0.15 -6.56 16 19 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 20 C -0.01 -0.22 5.48 -17.43 -0.10 -0.31 16 21 N -0.92 -27.38 10.46 55.49 0.58 -26.80 16 22 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 C 0.15 3.17 6.51 -3.64 -0.02 3.15 16 27 C 0.13 2.34 6.03 -3.64 -0.02 2.32 16 28 N -0.25 -2.97 8.29 33.42 0.28 -2.70 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.55 7.05 -51.93 -0.37 0.19 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.12 8.14 -51.93 -0.42 -0.31 16 34 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 36 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.18 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.16 1.72 8.06 -52.49 -0.42 1.30 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.09 1.12 5.98 -51.93 -0.31 0.81 16 42 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 43 H 0.08 1.05 7.78 -51.93 -0.40 0.65 16 44 H 0.06 1.06 7.94 -51.93 -0.41 0.64 16 45 H 0.06 1.15 7.82 -51.93 -0.41 0.74 16 46 H 0.08 2.10 6.72 -51.93 -0.35 1.75 16 47 H 0.02 0.61 8.11 -51.93 -0.42 0.19 16 48 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 49 H 0.03 0.58 7.86 -51.93 -0.41 0.17 16 50 H 0.02 0.53 7.41 -51.93 -0.39 0.15 16 51 H 0.07 1.34 7.44 -51.93 -0.39 0.95 16 52 H 0.07 1.47 7.78 -51.93 -0.40 1.07 16 LS Contribution 408.57 15.07 6.16 6.16 Total: -1.00 -34.40 408.57 -9.75 -44.16 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -8.87 Total: -2.35 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: -1.63 Total: 4.16 kcal Atomic # 7 Polarization: -58.24 SS G_CDS: -0.48 Total: -58.72 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.09 Total: -10.80 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.40 -9.75 -44.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041330573.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.247 kcal (2) G-P(sol) polarization free energy of solvation -34.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds