Wall clock time and date at job start Wed Apr 1 2020 04:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47103 * 2 1 4 4 C 1.53000 * 109.47376 * 120.00219 * 2 1 3 5 5 N 1.46501 * 109.46871 * 66.37443 * 4 2 1 6 6 C 1.35032 * 124.88461 * 83.61701 * 5 4 2 7 7 C 1.35363 * 107.22858 * 179.97438 * 6 5 4 8 8 C 1.41506 * 105.50370 * 359.97438 * 7 6 5 9 9 C 1.47703 * 126.51986 * 179.97438 * 8 7 6 10 10 O 1.21577 * 120.00057 * 5.43059 * 9 8 7 11 11 N 1.34779 * 120.00091 * 185.42679 * 9 8 7 12 12 C 1.47560 * 125.67326 * 353.72657 * 11 9 8 13 13 C 1.55438 * 104.87699 * 156.03094 * 12 11 9 14 14 C 1.53657 * 101.31424 * 35.83047 * 13 12 11 15 15 C 1.53660 * 111.41535 * 87.05740 * 14 13 12 16 16 C 1.55185 * 101.41477 * 155.02518 * 15 14 13 17 17 N 1.47559 * 105.01051 * 324.51398 * 16 15 14 18 18 C 1.36941 * 125.67404 * 203.83232 * 17 16 15 19 19 H 1.07994 * 119.99907 * 167.91745 * 18 17 16 20 20 C 1.38809 * 119.99610 * 347.90764 * 18 17 16 21 21 N 1.31618 * 120.00646 * 1.32070 * 20 18 17 22 22 Si 1.86806 * 119.99787 * 181.31439 * 20 18 17 23 23 H 1.48504 * 109.47067 * 94.98510 * 22 20 18 24 24 H 1.48497 * 109.47115 * 214.98683 * 22 20 18 25 25 H 1.48504 * 109.46808 * 334.98956 * 22 20 18 26 26 C 1.47409 * 108.65228 * 23.85960 * 17 16 15 27 27 C 1.47409 * 125.67135 * 174.03310 * 11 9 8 28 28 N 1.28469 * 124.88129 * 263.85820 * 5 4 2 29 29 H 1.09001 * 109.47134 * 63.59780 * 1 2 3 30 30 H 1.08997 * 109.46653 * 183.59592 * 1 2 3 31 31 H 1.08999 * 109.47103 * 303.59821 * 1 2 3 32 32 H 1.09007 * 109.46953 * 240.00600 * 2 1 3 33 33 H 1.08998 * 109.46912 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47013 * 300.00366 * 3 2 1 35 35 H 1.09004 * 109.46955 * 59.99976 * 3 2 1 36 36 H 1.08999 * 109.46798 * 306.37218 * 4 2 1 37 37 H 1.08995 * 109.47028 * 186.37720 * 4 2 1 38 38 H 1.07994 * 126.38489 * 359.93276 * 6 5 4 39 39 H 1.07999 * 127.24996 * 180.02562 * 7 6 5 40 40 H 1.09002 * 110.33262 * 275.01818 * 12 11 9 41 41 H 1.09000 * 110.33339 * 37.25931 * 12 11 9 42 42 H 1.08998 * 111.25457 * 277.75336 * 13 12 11 43 43 H 1.09005 * 110.94583 * 153.76570 * 13 12 11 44 44 H 1.08998 * 111.04046 * 273.06379 * 15 14 13 45 45 H 1.08999 * 111.03436 * 36.99991 * 15 14 13 46 46 H 1.09003 * 110.33442 * 205.62218 * 16 15 14 47 47 H 1.09005 * 110.41861 * 83.43549 * 16 15 14 48 48 H 0.96996 * 120.00449 * 180.02562 * 21 20 18 49 49 H 1.09001 * 109.98592 * 238.54049 * 26 17 16 50 50 H 1.08994 * 109.98439 * 117.23514 * 26 17 16 51 51 H 1.09001 * 109.98614 * 301.45263 * 27 11 9 52 52 H 1.08993 * 109.98609 * 62.72697 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6810 -2.1397 1.1749 6 6 2.3883 -3.0819 0.5151 7 6 1.7401 -4.2587 0.6802 8 6 0.6090 -3.9591 1.4759 9 6 -0.4206 -4.9136 1.9349 10 8 -0.2896 -6.1019 1.7138 11 7 -1.5053 -4.4672 2.5988 12 6 -1.7287 -3.0794 3.0476 13 6 -3.2722 -2.9433 3.1707 14 6 -3.6588 -4.3420 3.6760 15 6 -3.5823 -4.4259 5.2084 16 6 -4.5804 -5.5770 5.5032 17 7 -5.6515 -5.4203 4.5004 18 6 -6.9359 -5.8783 4.6256 19 1 -7.6962 -5.5502 3.9323 20 6 -7.2606 -6.7646 5.6434 21 7 -6.3399 -7.1445 6.5039 22 14 -9.0043 -7.4180 5.7920 23 1 -9.1024 -8.7287 5.1007 24 1 -9.3486 -7.5880 7.2265 25 1 -9.9480 -6.4568 5.1668 26 6 -5.1087 -4.6892 3.3411 27 6 -2.6628 -5.2856 3.0028 28 7 0.6454 -2.6651 1.7244 29 1 -0.3633 0.4570 -0.9205 30 1 -0.3632 -1.0256 0.0645 31 1 -0.3633 0.5687 0.8560 32 1 1.8933 -0.5138 -0.8901 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.5866 -0.2775 2.1355 37 1 3.1240 -0.6235 1.3080 38 1 3.3006 -2.9255 -0.0412 39 1 2.0264 -5.2233 0.2879 40 1 -1.2528 -2.9126 4.0140 41 1 -1.3447 -2.3759 2.3088 42 1 -3.7291 -2.7368 2.2029 43 1 -3.5390 -2.1769 3.8984 44 1 -2.5761 -4.6869 5.5363 45 1 -3.9126 -3.4944 5.6682 46 1 -4.9865 -5.4778 6.5099 47 1 -4.0910 -6.5440 5.3865 48 1 -6.5667 -7.7641 7.2148 49 1 -5.6813 -3.7768 3.1747 50 1 -5.1452 -5.3196 2.4528 51 1 -3.1190 -5.7445 2.1257 52 1 -2.3467 -6.0571 3.7049 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041330573.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:52 Heat of formation + Delta-G solvation = 53.456109 kcal Electronic energy + Delta-G solvation = -31134.163617 eV Core-core repulsion = 27135.353530 eV Total energy + Delta-G solvation = -3998.810087 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.64116 -41.41523 -39.64238 -37.39173 -37.20972 -34.54722 -33.16656 -32.21641 -31.60699 -30.68153 -29.86829 -28.30577 -27.98654 -27.06131 -25.76625 -23.92909 -23.17310 -22.57695 -22.22600 -21.03771 -20.39612 -20.16841 -18.85738 -18.27316 -17.75830 -17.25575 -16.81146 -16.77184 -16.48075 -16.03539 -15.63594 -15.61111 -15.22890 -14.90085 -14.65592 -14.43157 -14.25181 -14.12849 -13.78876 -13.71100 -13.62300 -13.39532 -13.17901 -13.10384 -12.94700 -12.89916 -12.85982 -12.70145 -12.48848 -12.22661 -11.99090 -11.91612 -11.88273 -11.76485 -11.68059 -11.62036 -11.45244 -11.23681 -11.16536 -10.68916 -10.18716 -10.04889 -9.67138 -8.83966 -7.85505 -5.23529 0.53116 1.21825 1.45289 1.47798 1.51594 1.56685 1.97970 2.32476 2.49508 3.23604 3.32389 3.52430 3.55343 3.62877 3.74130 3.78714 3.83668 3.96450 4.09241 4.15767 4.22587 4.29639 4.39795 4.48232 4.56570 4.60642 4.65675 4.68631 4.72554 4.76041 4.80213 4.82202 4.83280 4.91257 4.93546 4.97790 5.02749 5.05356 5.06040 5.18226 5.22690 5.27362 5.33647 5.38204 5.42143 5.45975 5.48126 5.61755 5.76329 5.95490 6.23068 6.42820 6.84072 7.09221 7.10910 7.76305 8.43858 9.24790 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021280 B = 0.002265 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.488155 B =12358.944078 C =13108.157970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.104 4.104 3 C -0.141 4.141 4 C 0.113 3.887 5 N -0.270 5.270 6 C 0.005 3.995 7 C -0.205 4.205 8 C -0.043 4.043 9 C 0.605 3.395 10 O -0.584 6.584 11 N -0.605 5.605 12 C 0.111 3.889 13 C -0.106 4.106 14 C -0.069 4.069 15 C -0.113 4.113 16 C 0.177 3.823 17 N -0.626 5.626 18 C -0.241 4.241 19 H 0.081 0.919 20 C -0.067 4.067 21 N -0.950 5.950 22 Si 0.979 3.021 23 H -0.291 1.291 24 H -0.293 1.293 25 H -0.265 1.265 26 C 0.148 3.852 27 C 0.134 3.866 28 N -0.256 5.256 29 H 0.058 0.942 30 H 0.033 0.967 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.108 0.892 37 H 0.135 0.865 38 H 0.225 0.775 39 H 0.157 0.843 40 H 0.075 0.925 41 H 0.106 0.894 42 H 0.085 0.915 43 H 0.108 0.892 44 H 0.072 0.928 45 H 0.084 0.916 46 H 0.043 0.957 47 H -0.015 1.015 48 H 0.247 0.753 49 H 0.046 0.954 50 H 0.016 0.984 51 H 0.054 0.946 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.779 22.509 -13.692 34.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.124 4.124 3 C -0.199 4.199 4 C -0.006 4.006 5 N -0.059 5.059 6 C -0.138 4.138 7 C -0.233 4.233 8 C -0.201 4.201 9 C 0.394 3.606 10 O -0.463 6.463 11 N -0.337 5.337 12 C -0.011 4.011 13 C -0.144 4.144 14 C -0.070 4.070 15 C -0.151 4.151 16 C 0.052 3.948 17 N -0.352 5.352 18 C -0.370 4.370 19 H 0.099 0.901 20 C -0.260 4.260 21 N -0.599 5.599 22 Si 0.807 3.193 23 H -0.218 1.218 24 H -0.219 1.219 25 H -0.189 1.189 26 C 0.023 3.977 27 C 0.011 3.989 28 N -0.094 5.094 29 H 0.077 0.923 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.126 0.874 37 H 0.153 0.847 38 H 0.242 0.758 39 H 0.175 0.825 40 H 0.093 0.907 41 H 0.124 0.876 42 H 0.103 0.897 43 H 0.127 0.873 44 H 0.090 0.910 45 H 0.103 0.897 46 H 0.062 0.938 47 H 0.003 0.997 48 H 0.056 0.944 49 H 0.064 0.936 50 H 0.034 0.966 51 H 0.073 0.927 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 22.241 22.727 -13.161 34.415 hybrid contribution -0.825 -2.141 -0.054 2.295 sum 21.416 20.587 -13.215 32.513 Atomic orbital electron populations 1.21872 0.95557 1.01051 1.02450 1.21483 0.96012 0.97882 0.97005 1.21751 1.02074 0.93125 1.02935 1.22622 1.03789 0.72845 1.01326 1.46047 1.15230 1.10254 1.34346 1.23344 1.01585 0.87073 1.01782 1.21939 0.96036 1.00738 1.04587 1.21551 0.99775 0.91161 1.07621 1.17098 0.80072 0.86381 0.77064 1.90757 1.78158 1.17699 1.59686 1.48546 1.17930 1.12402 1.54804 1.22724 0.95981 0.81370 1.01029 1.22732 0.94048 0.94673 1.02944 1.21355 0.93385 0.96234 0.96021 1.22741 0.99035 0.99723 0.93629 1.21309 0.87215 0.92919 0.93369 1.44912 1.07984 1.66193 1.16125 1.19435 0.85605 1.19946 1.11996 0.90086 1.25743 1.02027 0.99560 0.98671 1.70158 1.33691 1.37523 1.18535 0.85048 0.79413 0.78229 0.76566 1.21777 1.21925 1.18913 1.21269 0.91711 0.94995 0.89734 1.21639 0.85580 0.93564 0.98074 1.73529 1.08400 1.08487 1.18964 0.92279 0.94756 0.91782 0.90238 0.90648 0.91922 0.91738 0.87366 0.84723 0.75848 0.82550 0.90679 0.87567 0.89678 0.87333 0.90955 0.89733 0.93815 0.99746 0.94370 0.93557 0.96636 0.92721 0.93469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.13 71.98 0.66 -0.95 16 2 C -0.10 -0.56 3.11 -10.79 -0.03 -0.59 16 3 C -0.14 -0.28 9.19 71.98 0.66 0.38 16 4 C 0.11 0.62 5.65 86.38 0.49 1.11 16 5 N -0.27 -3.78 2.90 -347.96 -1.01 -4.79 16 6 C 0.00 0.06 11.46 83.54 0.96 1.02 16 7 C -0.20 -4.53 10.81 22.41 0.24 -4.28 16 8 C -0.04 -1.20 6.97 42.46 0.30 -0.90 16 9 C 0.60 21.51 7.84 86.74 0.68 22.19 16 10 O -0.58 -25.27 17.27 -3.96 -0.07 -25.33 16 11 N -0.60 -19.91 3.34 -815.87 -2.73 -22.64 16 12 C 0.11 2.75 6.25 87.02 0.54 3.30 16 13 C -0.11 -2.65 5.94 31.65 0.19 -2.46 16 14 C -0.07 -2.39 0.61 -51.86 -0.03 -2.42 16 15 C -0.11 -4.23 5.85 31.57 0.18 -4.04 16 16 C 0.18 9.08 5.44 86.93 0.47 9.55 16 17 N -0.63 -33.26 3.41 -693.05 -2.36 -35.62 16 18 C -0.24 -13.89 10.25 84.03 0.86 -13.03 16 19 H 0.08 4.46 7.83 -2.91 -0.02 4.43 16 20 C -0.07 -3.93 5.48 84.86 0.47 -3.47 16 21 N -0.95 -59.02 10.46 21.65 0.23 -58.79 16 22 Si 0.98 47.02 29.55 68.60 2.03 49.05 16 23 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 24 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 25 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 26 C 0.15 6.24 6.51 86.14 0.56 6.80 16 27 C 0.13 5.05 6.03 86.15 0.52 5.57 16 28 N -0.26 -5.52 8.29 -48.18 -0.40 -5.92 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.03 0.55 7.05 -2.39 -0.02 0.54 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.08 0.45 8.14 -2.38 -0.02 0.43 16 33 H 0.07 -0.06 8.14 -2.39 -0.02 -0.07 16 34 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 35 H 0.06 0.12 8.14 -2.38 -0.02 0.10 16 36 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.13 -0.11 8.14 -2.39 -0.02 -0.13 16 38 H 0.23 0.70 8.06 -2.91 -0.02 0.68 16 39 H 0.16 3.42 8.06 -2.91 -0.02 3.40 16 40 H 0.07 1.77 8.14 -2.39 -0.02 1.76 16 41 H 0.11 2.38 5.98 -2.39 -0.01 2.37 16 42 H 0.08 1.99 8.08 -2.39 -0.02 1.97 16 43 H 0.11 2.27 7.78 -2.38 -0.02 2.25 16 44 H 0.07 2.54 7.94 -2.39 -0.02 2.52 16 45 H 0.08 2.86 7.82 -2.39 -0.02 2.84 16 46 H 0.04 2.51 6.72 -2.39 -0.02 2.49 16 47 H -0.02 -0.89 8.11 -2.38 -0.02 -0.91 16 48 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 49 H 0.05 1.81 7.86 -2.39 -0.02 1.79 16 50 H 0.02 0.69 7.41 -2.39 -0.02 0.67 16 51 H 0.05 2.20 7.44 -2.39 -0.02 2.19 16 52 H 0.05 2.01 7.78 -2.39 -0.02 1.99 16 Total: -1.00 -80.92 408.57 4.29 -76.63 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 0.89 Total: 9.64 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: 7.71 Total: 17.77 kcal Atomic # 7 Polarization: -121.48 SS G_CDS: -6.27 Total: -127.76 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.07 Total: -25.33 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -80.92 4.29 -76.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041330573.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.088 kcal (2) G-P(sol) polarization free energy of solvation -80.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds