Wall clock time and date at job start Wed Apr 1 2020 04:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.47077 * 2 1 4 4 C 1.52998 * 109.47239 * 120.00266 * 2 1 3 5 5 N 1.46506 * 109.46726 * 174.58176 * 4 2 1 6 6 N 1.28441 * 125.18673 * 276.31321 * 5 4 2 7 7 C 1.30868 * 110.92742 * 180.02562 * 6 5 4 8 8 C 1.39673 * 107.85741 * 359.77568 * 7 6 5 9 9 C 1.36591 * 125.19071 * 96.34369 * 5 4 2 10 10 C 1.47169 * 126.88629 * 359.93519 * 9 5 4 11 11 O 1.21622 * 119.99628 * 8.39341 * 10 9 5 12 12 N 1.34772 * 119.99935 * 188.11134 * 10 9 5 13 13 C 1.47569 * 125.67730 * 358.36330 * 12 10 9 14 14 C 1.55427 * 104.88108 * 156.02580 * 13 12 10 15 15 C 1.53655 * 101.31541 * 35.82755 * 14 13 12 16 16 C 1.53654 * 111.42309 * 204.77424 * 15 14 13 17 17 C 1.55186 * 101.41596 * 272.72797 * 16 15 14 18 18 N 1.47564 * 105.00927 * 324.50758 * 17 16 15 19 19 C 1.36933 * 125.67184 * 203.82326 * 18 17 16 20 20 H 1.08006 * 119.99474 * 180.02562 * 19 18 17 21 21 C 1.38811 * 120.00650 * 0.04489 * 19 18 17 22 22 N 1.31623 * 119.99291 * 359.97438 * 21 19 18 23 23 Si 1.86787 * 120.00419 * 179.97438 * 21 19 18 24 24 H 1.48510 * 109.47375 * 89.99687 * 23 21 19 25 25 H 1.48501 * 109.47591 * 209.99819 * 23 21 19 26 26 H 1.48502 * 109.47497 * 330.00152 * 23 21 19 27 27 C 1.47402 * 108.65065 * 23.85876 * 18 17 16 28 28 C 1.47401 * 125.67488 * 178.66084 * 12 10 9 29 29 H 1.09003 * 109.46457 * 299.99557 * 1 2 3 30 30 H 1.08996 * 109.47281 * 59.99893 * 1 2 3 31 31 H 1.08993 * 109.46588 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46457 * 240.00443 * 2 1 3 33 33 H 1.09003 * 109.46869 * 304.84829 * 3 2 1 34 34 H 1.08996 * 109.46831 * 64.84104 * 3 2 1 35 35 H 1.08993 * 109.47166 * 184.85079 * 3 2 1 36 36 H 1.08995 * 109.47477 * 54.58354 * 4 2 1 37 37 H 1.09002 * 109.47037 * 294.57210 * 4 2 1 38 38 H 1.07998 * 126.06877 * 180.02562 * 7 6 5 39 39 H 1.08005 * 127.32087 * 180.27383 * 8 7 6 40 40 H 1.09008 * 110.32943 * 275.01323 * 13 12 10 41 41 H 1.08998 * 110.33196 * 37.24737 * 13 12 10 42 42 H 1.08991 * 111.25673 * 277.74999 * 14 13 12 43 43 H 1.09008 * 110.94905 * 153.76139 * 14 13 12 44 44 H 1.08999 * 111.03305 * 30.76343 * 16 15 14 45 45 H 1.08996 * 111.03549 * 154.69716 * 16 15 14 46 46 H 1.08997 * 110.33358 * 205.62034 * 17 16 15 47 47 H 1.09003 * 110.41991 * 83.43739 * 17 16 15 48 48 H 0.97002 * 119.99824 * 180.02562 * 22 21 19 49 49 H 1.08993 * 109.98989 * 238.54075 * 27 18 17 50 50 H 1.09003 * 109.98514 * 117.23428 * 27 18 17 51 51 H 1.09003 * 109.98690 * 301.46381 * 28 12 10 52 52 H 1.09006 * 109.98668 * 62.72638 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.4993 -0.8352 1.1856 6 7 4.1435 -1.7541 0.5608 7 6 5.4354 -1.5886 0.6883 8 6 5.6463 -0.4488 1.4675 9 6 4.3823 0.0193 1.7822 10 6 4.0554 1.2038 2.5920 11 8 2.9029 1.4207 2.9145 12 7 5.0338 2.0452 2.9809 13 6 6.4725 1.8824 2.6961 14 6 7.0609 3.3186 2.7793 15 6 6.2229 3.9223 3.9169 16 6 6.1546 5.4537 3.8119 17 6 7.4304 5.8721 4.5901 18 7 7.5523 4.8870 5.6820 19 6 8.2133 5.0839 6.8650 20 1 8.2453 4.2961 7.6032 21 6 8.8419 6.2959 7.1156 22 7 8.8029 7.2557 6.2159 23 14 9.7429 6.5646 8.7296 24 1 11.1595 6.1439 8.5818 25 1 9.6892 8.0034 9.0930 26 1 9.0966 5.7599 9.7974 27 6 6.8449 3.6556 5.2871 28 6 4.8454 3.2780 3.7667 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.6075 1.9808 -0.8434 34 1 1.7493 1.9307 0.9302 35 1 3.1265 1.4438 -0.0869 36 1 1.5998 -1.7171 1.2990 37 1 1.7583 -0.1544 2.1365 38 1 6.2022 -2.2188 0.2627 39 1 6.5942 -0.0238 1.7630 40 1 6.9356 1.2366 3.4424 41 1 6.6167 1.4718 1.6968 42 1 6.9066 3.8633 1.8480 43 1 8.1181 3.2919 3.0439 44 1 6.2067 5.7773 2.7724 45 1 5.2572 5.8394 4.2956 46 1 7.3133 6.8764 4.9973 47 1 8.3042 5.8272 3.9401 48 1 9.2425 8.1026 6.3908 49 1 6.0643 3.4255 6.0121 50 1 7.5491 2.8262 5.2214 51 1 4.1725 3.9556 3.2412 52 1 4.4378 3.0356 4.7482 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041330679.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:08 Heat of formation + Delta-G solvation = 80.333942 kcal Electronic energy + Delta-G solvation = -31658.670392 eV Core-core repulsion = 27661.025816 eV Total energy + Delta-G solvation = -3997.644577 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.76534 -40.22891 -38.39524 -36.82304 -35.73723 -32.98986 -32.17949 -31.28800 -30.31718 -29.39772 -28.28327 -27.45981 -26.84089 -25.76167 -24.42572 -23.09133 -22.03475 -21.77191 -20.71789 -20.34028 -19.53661 -18.83817 -17.24574 -16.85856 -16.52464 -16.37242 -15.69461 -15.42344 -15.37536 -14.85675 -14.47491 -14.19528 -14.15191 -13.94642 -13.84043 -13.66044 -13.17095 -12.96203 -12.64833 -12.53244 -12.44251 -12.35302 -12.18140 -11.93830 -11.57358 -11.56179 -11.43455 -11.33539 -11.25351 -11.10650 -10.95091 -10.85454 -10.70092 -10.25806 -10.12440 -10.03334 -9.96489 -9.79284 -9.52412 -9.34993 -9.16511 -8.69617 -8.65723 -6.86465 -5.68220 -3.09583 1.13191 2.15347 2.46179 2.96987 3.09670 3.38274 3.43714 3.45420 4.19769 4.27115 4.42205 4.45956 4.63597 4.64486 4.67794 4.80905 4.94336 5.01205 5.09275 5.15824 5.24314 5.32915 5.35714 5.38548 5.43405 5.46046 5.49004 5.57256 5.57971 5.62323 5.74051 5.74678 5.78739 5.86929 5.91433 5.97674 6.07812 6.10693 6.16881 6.21981 6.31034 6.33172 6.50718 6.57116 6.58906 6.69512 6.78689 7.37126 7.47376 7.59660 7.82579 7.86008 8.01289 8.32748 9.19173 9.79734 10.44511 11.35811 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022405 B = 0.002368 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.401450 B =11819.296679 C =12330.275992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.105 4.105 3 C -0.151 4.151 4 C 0.113 3.887 5 N -0.252 5.252 6 N -0.280 5.280 7 C -0.006 4.006 8 C -0.204 4.204 9 C -0.027 4.027 10 C 0.602 3.398 11 O -0.544 6.544 12 N -0.597 5.597 13 C 0.083 3.917 14 C -0.114 4.114 15 C -0.082 4.082 16 C -0.131 4.131 17 C 0.155 3.845 18 N -0.604 5.604 19 C -0.222 4.222 20 H 0.077 0.923 21 C -0.011 4.011 22 N -0.922 5.922 23 Si 0.914 3.086 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.282 1.282 27 C 0.151 3.849 28 C 0.129 3.871 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.047 0.953 36 H 0.095 0.905 37 H 0.124 0.876 38 H 0.185 0.815 39 H 0.173 0.827 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.076 0.924 43 H 0.092 0.908 44 H 0.062 0.938 45 H 0.063 0.937 46 H 0.105 0.895 47 H 0.013 0.987 48 H 0.252 0.748 49 H 0.025 0.975 50 H 0.024 0.976 51 H 0.072 0.928 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.743 -14.363 -14.364 22.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.125 4.125 3 C -0.209 4.209 4 C -0.007 4.007 5 N -0.040 5.040 6 N -0.112 5.112 7 C -0.182 4.182 8 C -0.233 4.233 9 C -0.156 4.156 10 C 0.390 3.610 11 O -0.423 6.423 12 N -0.330 5.330 13 C -0.039 4.039 14 C -0.152 4.152 15 C -0.083 4.083 16 C -0.170 4.170 17 C 0.030 3.970 18 N -0.330 5.330 19 C -0.350 4.350 20 H 0.095 0.905 21 C -0.206 4.206 22 N -0.571 5.571 23 Si 0.744 3.256 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.025 3.975 28 C 0.007 3.993 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.066 0.934 36 H 0.113 0.887 37 H 0.142 0.858 38 H 0.202 0.798 39 H 0.190 0.810 40 H 0.095 0.905 41 H 0.107 0.893 42 H 0.094 0.906 43 H 0.110 0.890 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.123 0.877 47 H 0.031 0.969 48 H 0.063 0.937 49 H 0.043 0.957 50 H 0.042 0.958 51 H 0.091 0.909 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.261 -14.811 -14.553 24.114 hybrid contribution 1.308 0.497 1.112 1.787 sum -10.953 -14.314 -13.442 22.484 Atomic orbital electron populations 1.21758 0.93493 1.02122 1.02762 1.21428 0.96743 0.97174 0.97128 1.21930 1.00722 0.95208 1.02994 1.22481 0.72926 1.03300 1.01996 1.45738 1.07480 1.16867 1.33886 1.73175 1.07789 1.13386 1.16887 1.23591 0.92358 0.99285 1.02969 1.22886 0.97295 0.98998 1.04103 1.21319 0.90524 0.97861 1.05879 1.16456 0.84255 0.80900 0.79383 1.90735 1.19076 1.74670 1.57775 1.48288 1.07252 1.24137 1.53289 1.23078 0.80017 0.99151 1.01633 1.22709 1.00593 0.93384 0.98500 1.21566 0.92926 0.97199 0.96641 1.22875 1.01817 0.92006 1.00263 1.21963 0.90441 0.96905 0.87682 1.44613 1.61743 1.10053 1.16572 1.19067 1.25198 0.98487 0.92271 0.90535 1.24776 1.01048 0.96375 0.98449 1.69798 1.48373 1.05193 1.33738 0.86082 0.79564 0.77111 0.82794 1.21645 1.21663 1.20719 1.21131 0.94401 0.90812 0.91111 1.21968 0.97718 0.84051 0.95592 0.91890 0.91854 0.92339 0.90590 0.92502 0.90879 0.93366 0.88703 0.85781 0.79779 0.81003 0.90479 0.89313 0.90569 0.88986 0.91957 0.91816 0.87718 0.96853 0.93731 0.95676 0.95811 0.90939 0.90812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.19 37.16 0.34 -0.67 16 2 C -0.11 -0.96 3.12 -90.62 -0.28 -1.24 16 3 C -0.15 -1.59 8.06 37.16 0.30 -1.29 16 4 C 0.11 1.16 5.45 -4.04 -0.02 1.14 16 5 N -0.25 -3.06 3.08 -57.14 -0.18 -3.23 16 6 N -0.28 -3.38 11.90 30.59 0.36 -3.01 16 7 C -0.01 -0.06 12.03 -17.43 -0.21 -0.27 16 8 C -0.20 -2.17 9.30 -38.98 -0.36 -2.53 16 9 C -0.03 -0.35 5.82 -82.06 -0.48 -0.82 16 10 C 0.60 8.46 7.25 -12.64 -0.09 8.37 16 11 O -0.54 -8.58 13.15 5.26 0.07 -8.52 16 12 N -0.60 -7.97 3.34 -172.05 -0.57 -8.55 16 13 C 0.08 0.94 5.29 -2.17 -0.01 0.93 16 14 C -0.11 -1.49 5.87 -25.10 -0.15 -1.63 16 15 C -0.08 -1.29 0.61 -154.02 -0.09 -1.39 16 16 C -0.13 -2.28 5.93 -25.23 -0.15 -2.43 16 17 C 0.15 3.54 5.83 -2.30 -0.01 3.53 16 18 N -0.60 -14.74 3.41 -170.41 -0.58 -15.32 16 19 C -0.22 -6.02 10.28 -15.06 -0.15 -6.17 16 20 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 21 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 22 N -0.92 -26.23 10.10 55.49 0.56 -25.67 16 23 Si 0.91 21.70 29.55 -169.99 -5.02 16.68 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 27 C 0.15 2.96 6.39 -3.64 -0.02 2.93 16 28 C 0.13 1.87 6.13 -3.64 -0.02 1.85 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.88 6.73 -51.93 -0.35 0.53 16 35 H 0.05 0.58 6.98 -51.93 -0.36 0.22 16 36 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.12 1.42 5.85 -51.93 -0.30 1.12 16 38 H 0.19 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.17 1.47 4.90 -52.48 -0.26 1.21 16 40 H 0.08 0.84 8.07 -51.92 -0.42 0.42 16 41 H 0.09 0.83 5.26 -51.93 -0.27 0.55 16 42 H 0.08 0.92 7.82 -51.93 -0.41 0.52 16 43 H 0.09 1.28 7.94 -51.92 -0.41 0.87 16 44 H 0.06 0.96 7.78 -51.93 -0.40 0.55 16 45 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 46 H 0.11 2.75 5.89 -51.93 -0.31 2.45 16 47 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 49 H 0.03 0.51 7.44 -51.93 -0.39 0.12 16 50 H 0.02 0.46 7.78 -51.93 -0.40 0.06 16 51 H 0.07 1.04 7.86 -51.93 -0.41 0.63 16 52 H 0.07 1.14 7.42 -51.93 -0.39 0.76 16 LS Contribution 394.87 15.07 5.95 5.95 Total: -1.00 -31.17 394.87 -9.35 -40.52 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -8.42 Total: 1.27 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -1.52 Total: -0.12 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: -0.41 Total: -55.79 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.07 Total: -8.52 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.17 -9.35 -40.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041330679.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.857 kcal (2) G-P(sol) polarization free energy of solvation -31.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds