Wall clock time and date at job start Wed Apr 1 2020 04:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.47077 * 2 1 4 4 C 1.52998 * 109.47239 * 120.00266 * 2 1 3 5 5 N 1.46506 * 109.46726 * 174.58176 * 4 2 1 6 6 N 1.28441 * 125.18673 * 276.31321 * 5 4 2 7 7 C 1.30868 * 110.92742 * 180.02562 * 6 5 4 8 8 C 1.39673 * 107.85741 * 359.77568 * 7 6 5 9 9 C 1.36591 * 125.19071 * 96.34369 * 5 4 2 10 10 C 1.47169 * 126.88629 * 359.93519 * 9 5 4 11 11 O 1.21622 * 119.99628 * 8.39341 * 10 9 5 12 12 N 1.34772 * 119.99935 * 188.11134 * 10 9 5 13 13 C 1.47569 * 125.67730 * 358.36330 * 12 10 9 14 14 C 1.55427 * 104.88108 * 156.02580 * 13 12 10 15 15 C 1.53655 * 101.31541 * 35.82755 * 14 13 12 16 16 C 1.53654 * 111.42309 * 204.77424 * 15 14 13 17 17 C 1.55186 * 101.41596 * 272.72797 * 16 15 14 18 18 N 1.47564 * 105.00927 * 324.50758 * 17 16 15 19 19 C 1.36933 * 125.67184 * 203.82326 * 18 17 16 20 20 H 1.08006 * 119.99474 * 180.02562 * 19 18 17 21 21 C 1.38811 * 120.00650 * 0.04489 * 19 18 17 22 22 N 1.31623 * 119.99291 * 359.97438 * 21 19 18 23 23 Si 1.86787 * 120.00419 * 179.97438 * 21 19 18 24 24 H 1.48510 * 109.47375 * 89.99687 * 23 21 19 25 25 H 1.48501 * 109.47591 * 209.99819 * 23 21 19 26 26 H 1.48502 * 109.47497 * 330.00152 * 23 21 19 27 27 C 1.47402 * 108.65065 * 23.85876 * 18 17 16 28 28 C 1.47401 * 125.67488 * 178.66084 * 12 10 9 29 29 H 1.09003 * 109.46457 * 299.99557 * 1 2 3 30 30 H 1.08996 * 109.47281 * 59.99893 * 1 2 3 31 31 H 1.08993 * 109.46588 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46457 * 240.00443 * 2 1 3 33 33 H 1.09003 * 109.46869 * 304.84829 * 3 2 1 34 34 H 1.08996 * 109.46831 * 64.84104 * 3 2 1 35 35 H 1.08993 * 109.47166 * 184.85079 * 3 2 1 36 36 H 1.08995 * 109.47477 * 54.58354 * 4 2 1 37 37 H 1.09002 * 109.47037 * 294.57210 * 4 2 1 38 38 H 1.07998 * 126.06877 * 180.02562 * 7 6 5 39 39 H 1.08005 * 127.32087 * 180.27383 * 8 7 6 40 40 H 1.09008 * 110.32943 * 275.01323 * 13 12 10 41 41 H 1.08998 * 110.33196 * 37.24737 * 13 12 10 42 42 H 1.08991 * 111.25673 * 277.74999 * 14 13 12 43 43 H 1.09008 * 110.94905 * 153.76139 * 14 13 12 44 44 H 1.08999 * 111.03305 * 30.76343 * 16 15 14 45 45 H 1.08996 * 111.03549 * 154.69716 * 16 15 14 46 46 H 1.08997 * 110.33358 * 205.62034 * 17 16 15 47 47 H 1.09003 * 110.41991 * 83.43739 * 17 16 15 48 48 H 0.97002 * 119.99824 * 180.02562 * 22 21 19 49 49 H 1.08993 * 109.98989 * 238.54075 * 27 18 17 50 50 H 1.09003 * 109.98514 * 117.23428 * 27 18 17 51 51 H 1.09003 * 109.98690 * 301.46381 * 28 12 10 52 52 H 1.09006 * 109.98668 * 62.72638 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.4993 -0.8352 1.1856 6 7 4.1435 -1.7541 0.5608 7 6 5.4354 -1.5886 0.6883 8 6 5.6463 -0.4488 1.4675 9 6 4.3823 0.0193 1.7822 10 6 4.0554 1.2038 2.5920 11 8 2.9029 1.4207 2.9145 12 7 5.0338 2.0452 2.9809 13 6 6.4725 1.8824 2.6961 14 6 7.0609 3.3186 2.7793 15 6 6.2229 3.9223 3.9169 16 6 6.1546 5.4537 3.8119 17 6 7.4304 5.8721 4.5901 18 7 7.5523 4.8870 5.6820 19 6 8.2133 5.0839 6.8650 20 1 8.2453 4.2961 7.6032 21 6 8.8419 6.2959 7.1156 22 7 8.8029 7.2557 6.2159 23 14 9.7429 6.5646 8.7296 24 1 11.1595 6.1439 8.5818 25 1 9.6892 8.0034 9.0930 26 1 9.0966 5.7599 9.7974 27 6 6.8449 3.6556 5.2871 28 6 4.8454 3.2780 3.7667 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.6075 1.9808 -0.8434 34 1 1.7493 1.9307 0.9302 35 1 3.1265 1.4438 -0.0869 36 1 1.5998 -1.7171 1.2990 37 1 1.7583 -0.1544 2.1365 38 1 6.2022 -2.2188 0.2627 39 1 6.5942 -0.0238 1.7630 40 1 6.9356 1.2366 3.4424 41 1 6.6167 1.4718 1.6968 42 1 6.9066 3.8633 1.8480 43 1 8.1181 3.2919 3.0439 44 1 6.2067 5.7773 2.7724 45 1 5.2572 5.8394 4.2956 46 1 7.3133 6.8764 4.9973 47 1 8.3042 5.8272 3.9401 48 1 9.2425 8.1026 6.3908 49 1 6.0643 3.4255 6.0121 50 1 7.5491 2.8262 5.2214 51 1 4.1725 3.9556 3.2412 52 1 4.4378 3.0356 4.7482 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041330679.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:06 Heat of formation + Delta-G solvation = 62.803860 kcal Electronic energy + Delta-G solvation = -31659.430554 eV Core-core repulsion = 27661.025816 eV Total energy + Delta-G solvation = -3998.404738 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.60971 -41.41619 -39.64104 -37.68679 -37.06603 -34.62997 -33.05459 -32.51483 -31.59913 -30.81200 -29.69246 -28.20243 -27.64032 -27.38266 -25.79320 -24.38969 -22.98192 -22.67132 -22.16701 -21.50162 -20.48638 -20.08628 -18.85637 -18.10880 -17.61681 -17.30178 -16.84203 -16.65002 -16.32247 -16.18103 -15.89535 -15.64296 -15.30917 -14.95542 -14.71517 -14.64434 -14.27420 -14.06785 -13.90316 -13.76457 -13.62019 -13.54060 -13.19506 -13.09803 -12.95699 -12.90733 -12.68574 -12.65224 -12.38970 -12.31107 -12.02856 -12.01042 -11.88415 -11.79089 -11.66906 -11.50665 -11.46460 -11.15905 -11.03944 -10.70495 -10.24722 -9.98137 -9.73829 -8.84940 -7.75289 -5.18443 0.21119 1.27789 1.48188 1.49120 1.57794 1.66297 2.00368 2.11361 2.50991 3.20564 3.34990 3.49610 3.53149 3.62673 3.65152 3.69719 3.86840 3.92218 3.96582 4.18197 4.19978 4.24738 4.34703 4.39904 4.44731 4.54934 4.62208 4.66089 4.67416 4.70912 4.72673 4.77703 4.81141 4.84020 4.87776 4.92940 4.95872 5.04092 5.06321 5.08897 5.22471 5.25619 5.29116 5.31771 5.34984 5.49359 5.56332 5.69065 5.76080 5.86232 6.32736 6.34694 6.89135 7.10236 7.13966 7.81039 8.44741 9.26398 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022405 B = 0.002368 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.401450 B =11819.296679 C =12330.275992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.098 4.098 3 C -0.144 4.144 4 C 0.110 3.890 5 N -0.259 5.259 6 N -0.296 5.296 7 C -0.005 4.005 8 C -0.196 4.196 9 C -0.050 4.050 10 C 0.601 3.399 11 O -0.568 6.568 12 N -0.598 5.598 13 C 0.088 3.912 14 C -0.108 4.108 15 C -0.071 4.071 16 C -0.116 4.116 17 C 0.159 3.841 18 N -0.625 5.625 19 C -0.236 4.236 20 H 0.078 0.922 21 C -0.066 4.066 22 N -0.947 5.947 23 Si 0.976 3.024 24 H -0.286 1.286 25 H -0.294 1.294 26 H -0.272 1.272 27 C 0.150 3.850 28 C 0.137 3.863 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.054 0.946 35 H 0.030 0.970 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.218 0.782 39 H 0.194 0.806 40 H 0.085 0.915 41 H 0.116 0.884 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.090 0.910 45 H 0.060 0.940 46 H 0.067 0.933 47 H -0.004 1.004 48 H 0.246 0.754 49 H 0.018 0.982 50 H 0.032 0.968 51 H 0.076 0.924 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.721 -16.291 -15.799 25.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.118 4.118 3 C -0.202 4.202 4 C -0.010 4.010 5 N -0.047 5.047 6 N -0.129 5.129 7 C -0.180 4.180 8 C -0.224 4.224 9 C -0.178 4.178 10 C 0.390 3.610 11 O -0.449 6.449 12 N -0.330 5.330 13 C -0.033 4.033 14 C -0.146 4.146 15 C -0.072 4.072 16 C -0.155 4.155 17 C 0.034 3.966 18 N -0.351 5.351 19 C -0.365 4.365 20 H 0.096 0.904 21 C -0.258 4.258 22 N -0.597 5.597 23 Si 0.805 3.195 24 H -0.213 1.213 25 H -0.221 1.221 26 H -0.197 1.197 27 C 0.025 3.975 28 C 0.014 3.986 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.050 0.950 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.234 0.766 39 H 0.211 0.789 40 H 0.103 0.897 41 H 0.134 0.866 42 H 0.111 0.889 43 H 0.103 0.897 44 H 0.108 0.892 45 H 0.079 0.921 46 H 0.085 0.915 47 H 0.014 0.986 48 H 0.056 0.944 49 H 0.036 0.964 50 H 0.050 0.950 51 H 0.095 0.905 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.247 -16.771 -15.998 26.215 hybrid contribution 1.303 1.057 1.564 2.294 sum -10.944 -15.715 -14.434 23.980 Atomic orbital electron populations 1.21741 0.91871 1.03137 1.02971 1.21383 0.98002 0.95935 0.96437 1.21849 0.99619 0.96251 1.02436 1.22550 0.72623 1.03976 1.01847 1.45888 1.07915 1.16861 1.34011 1.73176 1.08800 1.13606 1.17311 1.24194 0.92341 0.99282 1.02183 1.23193 0.97270 0.98758 1.03200 1.21288 0.91645 0.97977 1.06886 1.16680 0.83909 0.81236 0.79222 1.90724 1.20119 1.75334 1.58718 1.48272 1.08115 1.23601 1.52983 1.23195 0.78500 0.98168 1.03483 1.22687 0.99681 0.94459 0.97788 1.21383 0.94102 0.96107 0.95642 1.22716 0.98686 0.93229 1.00862 1.21724 0.92308 0.95114 0.87477 1.44898 1.61814 1.12142 1.16278 1.19410 1.25099 0.98557 0.93424 0.90442 1.25564 1.02360 0.96352 1.01558 1.70051 1.49167 1.05266 1.35246 0.85107 0.78373 0.76579 0.79442 1.21309 1.22101 1.19742 1.21271 0.93981 0.89221 0.93046 1.21721 0.96656 0.84803 0.95380 0.92324 0.90980 0.90954 0.90728 0.91381 0.92681 0.95038 0.87302 0.87312 0.76576 0.78915 0.89655 0.86633 0.88917 0.89683 0.89194 0.92091 0.91501 0.98639 0.94389 0.96442 0.95048 0.90529 0.92097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.19 71.98 0.66 -1.10 16 2 C -0.10 -1.68 3.12 -10.79 -0.03 -1.72 16 3 C -0.14 -2.94 8.06 71.98 0.58 -2.36 16 4 C 0.11 2.17 5.45 86.38 0.47 2.64 16 5 N -0.26 -5.92 3.08 -334.68 -1.03 -6.95 16 6 N -0.30 -6.52 11.90 -57.14 -0.68 -7.20 16 7 C 0.00 -0.08 12.03 85.18 1.02 0.94 16 8 C -0.20 -3.57 9.30 22.66 0.21 -3.36 16 9 C -0.05 -1.17 5.82 40.79 0.24 -0.94 16 10 C 0.60 16.23 7.25 86.59 0.63 16.86 16 11 O -0.57 -17.92 13.15 -4.10 -0.05 -17.97 16 12 N -0.60 -14.92 3.34 -816.50 -2.73 -17.65 16 13 C 0.09 1.72 5.29 87.01 0.46 2.18 16 14 C -0.11 -2.57 5.87 31.65 0.19 -2.38 16 15 C -0.07 -2.16 0.61 -51.86 -0.03 -2.19 16 16 C -0.12 -3.98 5.93 31.56 0.19 -3.80 16 17 C 0.16 7.42 5.83 86.93 0.51 7.92 16 18 N -0.63 -31.02 3.41 -693.04 -2.36 -33.38 16 19 C -0.24 -12.98 10.28 84.03 0.86 -12.12 16 20 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 21 C -0.07 -3.68 5.49 84.86 0.47 -3.21 16 22 N -0.95 -55.45 10.10 21.65 0.22 -55.23 16 23 Si 0.98 45.20 29.55 68.60 2.03 47.23 16 24 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 25 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 26 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 27 C 0.15 5.81 6.39 86.15 0.55 6.37 16 28 C 0.14 3.84 6.13 86.15 0.53 4.36 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.05 1.32 6.73 -2.39 -0.02 1.31 16 35 H 0.03 0.73 6.98 -2.39 -0.02 0.71 16 36 H 0.11 1.76 8.14 -2.39 -0.02 1.75 16 37 H 0.11 2.51 5.85 -2.39 -0.01 2.49 16 38 H 0.22 2.10 8.06 -2.91 -0.02 2.07 16 39 H 0.19 2.51 4.90 -2.91 -0.01 2.49 16 40 H 0.09 1.58 8.07 -2.38 -0.02 1.56 16 41 H 0.12 1.69 5.26 -2.39 -0.01 1.68 16 42 H 0.09 1.94 7.82 -2.39 -0.02 1.92 16 43 H 0.08 2.19 7.94 -2.38 -0.02 2.18 16 44 H 0.09 2.60 7.78 -2.39 -0.02 2.58 16 45 H 0.06 2.12 8.08 -2.39 -0.02 2.10 16 46 H 0.07 3.66 5.89 -2.39 -0.01 3.64 16 47 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 48 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 49 H 0.02 0.71 7.44 -2.39 -0.02 0.69 16 50 H 0.03 1.18 7.78 -2.39 -0.02 1.16 16 51 H 0.08 2.11 7.86 -2.39 -0.02 2.09 16 52 H 0.06 1.87 7.42 -2.38 -0.02 1.86 16 Total: -1.00 -69.40 394.87 3.80 -65.60 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 0.91 Total: 17.46 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: 7.50 Total: 8.10 kcal Atomic # 7 Polarization: -113.83 SS G_CDS: -6.59 Total: -120.41 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.05 Total: -17.97 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -69.40 3.80 -65.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041330679.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.404 kcal (2) G-P(sol) polarization free energy of solvation -69.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds