Wall clock time and date at job start Wed Apr 1 2020 04:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47044 * 2 1 4 4 C 1.52992 * 109.46966 * 240.00148 * 2 1 3 5 5 N 1.46499 * 109.46632 * 120.00190 * 2 1 3 6 6 C 1.35027 * 124.88705 * 75.00210 * 5 2 1 7 7 C 1.35363 * 107.22952 * 179.70689 * 6 5 2 8 8 C 1.41494 * 105.50589 * 0.26743 * 7 6 5 9 9 C 1.47705 * 126.52206 * 179.97438 * 8 7 6 10 10 O 1.21575 * 120.00068 * 354.71913 * 9 8 7 11 11 N 1.34773 * 120.00334 * 174.71260 * 9 8 7 12 12 C 1.47157 * 121.21526 * 5.50555 * 11 9 8 13 13 C 1.52840 * 107.97828 * 237.28784 * 12 11 9 14 14 C 1.53096 * 110.57927 * 302.65801 * 13 12 11 15 15 H 1.09000 * 112.49212 * 289.42989 * 14 13 12 16 16 C 1.56035 * 106.38947 * 164.56381 * 14 13 12 17 17 C 1.54504 * 102.61029 * 281.62096 * 16 14 13 18 18 N 1.47438 * 107.14872 * 337.15450 * 17 16 14 19 19 C 1.36941 * 126.06242 * 178.37871 * 18 17 16 20 20 H 1.07993 * 119.99880 * 179.97438 * 19 18 17 21 21 C 1.38816 * 119.99607 * 359.97438 * 19 18 17 22 22 N 1.31617 * 120.00032 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99593 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47103 * 90.00316 * 23 21 19 25 25 H 1.48504 * 109.46771 * 210.00296 * 23 21 19 26 26 H 1.48506 * 109.47275 * 330.00089 * 23 21 19 27 27 C 1.46469 * 107.87748 * 358.37639 * 18 17 16 28 28 H 1.08997 * 108.42352 * 270.10019 * 27 18 17 29 29 C 1.46761 * 121.22338 * 185.22234 * 11 9 8 30 30 N 1.28472 * 124.88323 * 255.18571 * 5 2 1 31 31 H 1.08996 * 109.47210 * 300.00344 * 1 2 3 32 32 H 1.09009 * 109.46831 * 59.99710 * 1 2 3 33 33 H 1.09000 * 109.47550 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47003 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.47373 * 299.99806 * 3 2 1 36 36 H 1.09003 * 109.46780 * 59.99863 * 3 2 1 37 37 H 1.09004 * 109.47437 * 299.99757 * 4 2 1 38 38 H 1.09000 * 109.47354 * 60.00253 * 4 2 1 39 39 H 1.09007 * 109.47318 * 180.02562 * 4 2 1 40 40 H 1.08009 * 126.38268 * 359.97072 * 6 5 2 41 41 H 1.08007 * 127.24802 * 180.28284 * 7 6 5 42 42 H 1.08990 * 109.76063 * 356.90438 * 12 11 9 43 43 H 1.08998 * 109.76282 * 117.62119 * 12 11 9 44 44 H 1.09005 * 109.25372 * 62.93967 * 13 12 11 45 45 H 1.09001 * 109.25732 * 182.37377 * 13 12 11 46 46 H 1.08999 * 110.78443 * 39.89867 * 16 14 13 47 47 H 1.08999 * 110.78227 * 163.34136 * 16 14 13 48 48 H 1.09000 * 109.90511 * 217.77319 * 17 16 14 49 49 H 1.09000 * 110.05164 * 96.61412 * 17 16 14 50 50 H 0.97004 * 119.99924 * 179.97438 * 22 21 19 51 51 H 1.08995 * 109.22899 * 247.78951 * 29 11 9 52 52 H 1.09005 * 109.22025 * 7.14530 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0183 -0.6907 1.1962 6 6 2.0054 -2.0290 1.3745 7 6 2.5414 -2.2764 2.5926 8 6 2.8665 -1.0074 3.1276 9 6 3.4801 -0.7395 4.4442 10 8 3.6674 -1.6526 5.2247 11 7 3.8326 0.5172 4.7802 12 6 3.5107 1.6584 3.9088 13 6 4.8182 2.3681 3.5586 14 6 5.5478 2.8102 4.8298 15 1 5.0420 3.6322 5.3364 16 6 7.0102 3.1478 4.4034 17 6 7.6573 1.7501 4.2819 18 7 6.8622 0.8290 5.1145 19 6 7.0782 -0.5152 5.2613 20 1 6.4323 -1.0994 5.8998 21 6 8.1276 -1.1269 4.5892 22 7 8.9151 -0.4148 3.8114 23 14 8.4218 -2.9607 4.7889 24 1 7.6554 -3.7005 3.7543 25 1 9.8702 -3.2495 4.6329 26 1 7.9740 -3.3900 6.1381 27 6 5.8002 1.6068 5.7569 28 1 6.1746 1.9791 6.7105 29 6 4.5460 0.7983 6.0315 30 7 2.5172 -0.1098 2.2278 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 1.6767 -1.7489 -1.2493 38 1 1.6767 -0.2073 -2.1392 39 1 3.1300 -0.7216 -1.2490 40 1 1.6398 -2.7653 0.6739 41 1 2.6900 -3.2396 3.0581 42 1 3.0294 1.3023 2.9980 43 1 2.8462 2.3459 4.4321 44 1 5.4571 1.6874 2.9958 45 1 4.5995 3.2434 2.9468 46 1 7.0238 3.6649 3.4440 47 1 7.5098 3.7399 5.1702 48 1 8.6849 1.7841 4.6438 49 1 7.6406 1.4195 3.2434 50 1 9.6486 -0.8422 3.3420 51 1 3.8923 1.3595 6.6992 52 1 4.8210 -0.1431 6.5072 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042076802.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:17 Heat of formation + Delta-G solvation = 89.562114 kcal Electronic energy + Delta-G solvation = -33227.598752 eV Core-core repulsion = 29230.354339 eV Total energy + Delta-G solvation = -3997.244413 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.63519 -39.61813 -37.87026 -36.88238 -34.82469 -32.70575 -31.32497 -30.80170 -30.54095 -28.85689 -28.21083 -27.84560 -27.56953 -24.87538 -24.32633 -22.82389 -22.36052 -21.62618 -19.90843 -19.73346 -19.46686 -18.21870 -17.13333 -16.42739 -16.33967 -15.97693 -15.27289 -14.74544 -14.58356 -14.49986 -14.27371 -13.90143 -13.85692 -13.67471 -13.62032 -12.95879 -12.86598 -12.81405 -12.71283 -12.56261 -12.42749 -12.31388 -12.13136 -11.86510 -11.52936 -11.51324 -11.40026 -11.30495 -11.20910 -10.77623 -10.71532 -10.63298 -10.23614 -9.98103 -9.74761 -9.63545 -9.54433 -9.41567 -9.13569 -9.05891 -8.85116 -8.43426 -7.90959 -6.65956 -5.54929 -2.86037 1.88536 2.38157 2.41338 3.54588 3.58526 3.59336 3.63833 4.01993 4.09924 4.36898 4.46515 4.66896 4.75971 4.79333 5.06464 5.10349 5.22283 5.24955 5.33677 5.34706 5.39796 5.45103 5.47595 5.53089 5.58897 5.66557 5.75230 5.78100 5.85779 5.87695 5.92508 5.95014 5.96892 6.07138 6.15443 6.24634 6.30820 6.40114 6.43628 6.55612 6.65168 6.70198 6.74917 6.87026 7.00161 7.11960 7.34978 7.71998 7.74250 7.99554 8.01675 8.20547 8.40277 8.84316 9.39055 10.00145 10.65085 11.57599 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010804 B = 0.004449 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.962988 B = 6292.458425 C = 7162.557104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.168 3.832 3 C -0.149 4.149 4 C -0.160 4.160 5 N -0.280 5.280 6 C -0.020 4.020 7 C -0.179 4.179 8 C 0.003 3.997 9 C 0.607 3.393 10 O -0.535 6.535 11 N -0.580 5.580 12 C 0.078 3.922 13 C -0.117 4.117 14 C -0.102 4.102 15 H 0.073 0.927 16 C -0.143 4.143 17 C 0.180 3.820 18 N -0.588 5.588 19 C -0.210 4.210 20 H 0.081 0.919 21 C -0.009 4.009 22 N -0.927 5.927 23 Si 0.905 3.095 24 H -0.291 1.291 25 H -0.294 1.294 26 H -0.280 1.280 27 C 0.155 3.845 28 H 0.026 0.974 29 C 0.113 3.887 30 N -0.259 5.259 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.175 0.825 41 H 0.159 0.841 42 H 0.133 0.867 43 H 0.053 0.947 44 H 0.077 0.923 45 H 0.056 0.944 46 H 0.057 0.943 47 H 0.053 0.947 48 H 0.040 0.960 49 H 0.044 0.956 50 H 0.248 0.752 51 H 0.055 0.945 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.185 5.754 -10.450 21.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.086 3.914 3 C -0.206 4.206 4 C -0.218 4.218 5 N -0.068 5.068 6 C -0.162 4.162 7 C -0.206 4.206 8 C -0.157 4.157 9 C 0.393 3.607 10 O -0.410 6.410 11 N -0.312 5.312 12 C -0.046 4.046 13 C -0.155 4.155 14 C -0.122 4.122 15 H 0.092 0.908 16 C -0.181 4.181 17 C 0.055 3.945 18 N -0.313 5.313 19 C -0.338 4.338 20 H 0.099 0.901 21 C -0.204 4.204 22 N -0.576 5.576 23 Si 0.737 3.263 24 H -0.218 1.218 25 H -0.220 1.220 26 H -0.206 1.206 27 C 0.046 3.954 28 H 0.043 0.957 29 C -0.010 4.010 30 N -0.093 5.093 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.192 0.808 41 H 0.177 0.823 42 H 0.150 0.850 43 H 0.071 0.929 44 H 0.095 0.905 45 H 0.074 0.926 46 H 0.076 0.924 47 H 0.072 0.928 48 H 0.058 0.942 49 H 0.062 0.938 50 H 0.058 0.942 51 H 0.073 0.927 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -17.972 6.272 -10.411 21.696 hybrid contribution 0.414 -1.811 0.060 1.858 sum -17.557 4.462 -10.351 20.864 Atomic orbital electron populations 1.22242 0.92494 1.03282 1.03591 1.20973 0.94789 0.94097 0.81530 1.21989 1.02861 0.92460 1.03337 1.22238 1.02876 1.00974 0.95724 1.45953 1.43026 1.04761 1.13079 1.22622 1.07512 0.86352 0.99754 1.21741 1.04883 0.98863 0.95162 1.22087 1.06095 0.91423 0.96055 1.16809 0.77632 0.82497 0.83727 1.90751 1.55645 1.43862 1.50759 1.47579 1.55557 1.05875 1.22142 1.22573 0.97124 0.87899 0.96980 1.21764 0.96662 0.99588 0.97465 1.22392 0.96053 0.97348 0.96417 0.90825 1.23150 0.95459 0.99901 0.99629 1.21195 0.93572 0.84000 0.95719 1.44277 1.29593 1.04547 1.52891 1.19054 1.09978 0.82122 1.22676 0.90123 1.24685 0.98293 0.97668 0.99769 1.69968 1.19917 1.33626 1.34042 0.86184 0.76513 0.85681 0.77960 1.21813 1.22044 1.20597 1.20775 0.88932 0.90815 0.94839 0.95717 1.21539 0.92706 1.01934 0.84822 1.73080 1.15257 1.25254 0.95732 0.91396 0.90185 0.91630 0.91032 0.90701 0.90700 0.91416 0.89927 0.91075 0.80827 0.82341 0.85036 0.92873 0.90470 0.92578 0.92438 0.92848 0.94226 0.93804 0.94185 0.92725 0.88789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.02 8.70 37.16 0.32 -0.70 16 2 C 0.17 1.43 1.21 -131.82 -0.16 1.27 16 3 C -0.15 -1.26 8.01 37.16 0.30 -0.96 16 4 C -0.16 -1.10 8.27 37.15 0.31 -0.79 16 5 N -0.28 -3.50 3.16 -48.62 -0.15 -3.65 16 6 C -0.02 -0.24 10.52 -17.17 -0.18 -0.42 16 7 C -0.18 -2.88 10.81 -39.37 -0.43 -3.31 16 8 C 0.00 0.06 6.91 -82.77 -0.57 -0.51 16 9 C 0.61 13.13 7.71 -12.39 -0.10 13.03 16 10 O -0.54 -13.18 16.41 5.30 0.09 -13.09 16 11 N -0.58 -11.53 2.96 -174.98 -0.52 -12.04 16 12 C 0.08 1.29 6.34 -3.77 -0.02 1.27 16 13 C -0.12 -2.01 5.04 -26.76 -0.13 -2.15 16 14 C -0.10 -1.82 3.68 -88.43 -0.33 -2.15 16 15 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 16 C -0.14 -2.73 6.33 -24.32 -0.15 -2.88 16 17 C 0.18 4.46 4.61 -2.74 -0.01 4.45 16 18 N -0.59 -15.23 3.20 -164.16 -0.53 -15.75 16 19 C -0.21 -6.11 9.71 -15.06 -0.15 -6.26 16 20 H 0.08 2.41 6.53 -52.49 -0.34 2.06 16 21 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 22 N -0.93 -28.33 10.38 55.49 0.58 -27.76 16 23 Si 0.91 24.14 29.55 -169.99 -5.02 19.12 16 24 H -0.29 -7.85 7.11 56.52 0.40 -7.44 16 25 H -0.29 -7.76 7.11 56.52 0.40 -7.36 16 26 H -0.28 -7.39 7.11 56.52 0.40 -6.99 16 27 C 0.15 3.28 2.97 -68.08 -0.20 3.08 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 29 C 0.11 2.29 5.70 -4.55 -0.03 2.27 16 30 N -0.26 -4.05 7.30 33.42 0.24 -3.81 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.35 8.14 -51.92 -0.42 -0.08 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.69 7.99 -51.93 -0.42 0.27 16 37 H 0.07 0.40 7.27 -51.93 -0.38 0.03 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.17 1.46 7.47 -52.48 -0.39 1.06 16 41 H 0.16 2.47 8.06 -52.48 -0.42 2.05 16 42 H 0.13 2.12 3.78 -106.36 -0.40 1.72 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.08 1.66 6.86 -51.93 -0.36 1.30 16 45 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.06 1.00 7.97 -51.93 -0.41 0.58 16 47 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.04 1.09 7.57 -51.93 -0.39 0.70 16 49 H 0.04 1.22 7.04 -51.93 -0.37 0.85 16 50 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 51 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 52 H 0.09 2.18 5.60 -51.93 -0.29 1.89 16 LS Contribution 396.58 15.07 5.98 5.98 Total: -1.00 -35.48 396.58 -9.77 -45.24 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -8.80 Total: 0.88 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: -1.63 Total: 4.89 kcal Atomic # 7 Polarization: -62.64 SS G_CDS: -0.38 Total: -63.01 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.09 Total: -13.09 kcal Atomic # 14 Polarization: 24.14 SS G_CDS: -5.02 Total: 19.12 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.48 -9.77 -45.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042076802.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.804 kcal (2) G-P(sol) polarization free energy of solvation -35.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds