Wall clock time and date at job start Wed Apr 1 2020 04:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46924 * 2 1 4 4 C 1.52997 * 109.47148 * 120.00563 * 2 1 3 5 5 N 1.46504 * 109.46959 * 174.99665 * 4 2 1 6 6 C 1.35033 * 124.88173 * 124.99677 * 5 4 2 7 7 C 1.35363 * 107.22723 * 179.97438 * 6 5 4 8 8 C 1.41498 * 105.50416 * 359.97438 * 7 6 5 9 9 C 1.47706 * 126.51979 * 179.97438 * 8 7 6 10 10 O 1.21579 * 119.99900 * 352.80449 * 9 8 7 11 11 N 1.34770 * 120.00351 * 172.80184 * 9 8 7 12 12 C 1.46605 * 119.75626 * 173.05017 * 11 9 8 13 13 C 1.53884 * 110.70886 * 132.28159 * 12 11 9 14 14 C 1.51968 * 107.29242 * 51.81020 * 13 12 11 15 15 H 1.09003 * 111.56050 * 56.83600 * 14 13 12 16 16 C 1.53692 * 115.01741 * 184.54144 * 14 13 12 17 17 C 1.55294 * 101.84942 * 153.49602 * 16 14 13 18 18 N 1.48158 * 107.04430 * 337.53188 * 17 16 14 19 19 C 1.36934 * 126.40035 * 175.02071 * 18 17 16 20 20 H 1.07997 * 120.00404 * 180.02562 * 19 18 17 21 21 C 1.38820 * 120.00020 * 0.02617 * 19 18 17 22 22 N 1.31621 * 119.99456 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00202 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46837 * 60.00183 * 23 21 19 25 25 H 1.48504 * 109.46940 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.46964 * 300.00444 * 23 21 19 27 27 C 1.45507 * 107.20406 * 355.00633 * 18 17 16 28 28 H 1.09002 * 109.56977 * 273.36280 * 27 18 17 29 29 C 1.47904 * 120.26722 * 353.52453 * 11 9 8 30 30 N 1.28468 * 124.88805 * 305.24771 * 5 4 2 31 31 H 1.09000 * 109.46987 * 299.99508 * 1 2 3 32 32 H 1.08997 * 109.47319 * 59.99634 * 1 2 3 33 33 H 1.09001 * 109.46875 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.46987 * 240.00492 * 2 1 3 35 35 H 1.09000 * 109.46886 * 60.00431 * 3 2 1 36 36 H 1.09004 * 109.46623 * 180.02562 * 3 2 1 37 37 H 1.08997 * 109.47421 * 300.00303 * 3 2 1 38 38 H 1.08999 * 109.47303 * 55.00265 * 4 2 1 39 39 H 1.08998 * 109.47106 * 294.99814 * 4 2 1 40 40 H 1.08002 * 126.38879 * 359.97438 * 6 5 4 41 41 H 1.08004 * 127.24713 * 179.97438 * 7 6 5 42 42 H 1.08999 * 109.22717 * 11.96295 * 12 11 9 43 43 H 1.08997 * 109.22882 * 252.59568 * 12 11 9 44 44 H 1.09003 * 109.88869 * 292.36574 * 13 12 11 45 45 H 1.09000 * 109.89281 * 171.26127 * 13 12 11 46 46 H 1.09000 * 110.95397 * 35.35044 * 16 14 13 47 47 H 1.08998 * 110.96217 * 271.65117 * 16 14 13 48 48 H 1.09001 * 109.92111 * 96.88102 * 17 16 14 49 49 H 1.08999 * 109.92189 * 217.98562 * 17 16 14 50 50 H 0.97004 * 119.99642 * 180.02562 * 22 21 19 51 51 H 1.08999 * 110.46150 * 112.42243 * 29 11 9 52 52 H 1.08997 * 109.62526 * 350.87821 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 7 3.5001 -0.8265 1.1904 6 6 4.3451 -0.3875 2.1478 7 6 5.6027 -0.6639 1.7300 8 6 5.4535 -1.2921 0.4709 9 6 6.5400 -1.7871 -0.3987 10 8 7.6992 -1.5555 -0.1147 11 7 6.2464 -2.4956 -1.5069 12 6 7.3139 -2.8532 -2.4459 13 6 7.2310 -4.3430 -2.8223 14 6 5.8068 -4.6156 -3.2769 15 1 5.5192 -3.9666 -4.1042 16 6 5.4960 -6.0870 -3.5941 17 6 3.9666 -6.1532 -3.3335 18 7 3.6325 -5.0342 -2.4217 19 6 2.3788 -4.6668 -2.0115 20 1 2.2536 -3.8290 -1.3416 21 6 1.2686 -5.3713 -2.4567 22 7 1.4212 -6.3926 -3.2728 23 14 -0.4417 -4.8706 -1.8966 24 1 -0.7111 -3.4725 -2.3184 25 1 -1.4477 -5.7755 -2.5086 26 1 -0.5257 -4.9662 -0.4170 27 6 4.8855 -4.3986 -2.0434 28 1 5.3079 -4.9103 -1.1786 29 6 4.8518 -2.9036 -1.7832 30 7 4.1609 -1.3455 0.2186 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.1300 1.4425 -0.0005 37 1 1.6766 1.9564 -0.8899 38 1 1.6055 -1.7199 1.2950 39 1 1.7517 -0.1585 2.1369 40 1 4.0692 0.0942 3.0742 41 1 6.5256 -0.4500 2.2486 42 1 8.2805 -2.6529 -1.9838 43 1 7.2158 -2.2491 -3.3479 44 1 7.4675 -4.9585 -1.9543 45 1 7.9270 -4.5601 -3.6327 46 1 6.0355 -6.7531 -2.9208 47 1 5.7248 -6.3184 -4.6344 48 1 3.4246 -6.0415 -4.2726 49 1 3.7100 -7.1047 -2.8678 50 1 0.6454 -6.8847 -3.5842 51 1 4.4681 -2.3802 -2.6588 52 1 4.2288 -2.6891 -0.9149 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042081251.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:58 Heat of formation + Delta-G solvation = 80.129946 kcal Electronic energy + Delta-G solvation = -32696.382186 eV Core-core repulsion = 28698.728763 eV Total energy + Delta-G solvation = -3997.653423 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.62531 -39.82393 -38.06562 -36.57712 -35.08993 -33.10477 -32.16557 -31.29029 -30.54565 -29.19322 -28.40352 -27.37026 -26.91361 -24.75761 -23.95172 -22.83079 -21.57897 -21.38373 -20.25961 -20.02541 -19.59108 -18.90683 -17.30686 -16.69240 -16.39638 -16.23452 -15.42114 -15.16327 -14.79698 -14.72130 -14.22598 -14.07309 -13.86161 -13.64697 -13.59398 -13.24058 -13.11861 -13.06316 -12.93241 -12.47249 -12.40839 -12.12791 -11.97452 -11.82690 -11.52609 -11.39063 -11.26002 -11.18192 -10.98237 -10.86925 -10.79095 -10.68722 -10.55115 -10.16242 -9.98813 -9.81677 -9.72089 -9.58474 -9.30861 -8.98655 -8.93072 -8.61422 -8.25426 -6.82472 -5.70366 -3.03055 1.76708 2.23314 2.48246 3.30655 3.35719 3.38903 3.42593 3.66744 4.24144 4.47846 4.57997 4.66651 4.73826 4.90356 4.94859 5.11330 5.17015 5.29123 5.32315 5.36698 5.43305 5.47444 5.48140 5.65124 5.68520 5.70680 5.74054 5.76277 5.80103 5.88367 5.91328 5.95491 6.02580 6.09289 6.14581 6.16834 6.24288 6.25701 6.32965 6.35489 6.53740 6.63250 6.68658 6.75523 6.82495 7.10805 7.15991 7.56129 7.64158 7.69192 7.82982 8.05156 8.25525 8.47824 9.20647 9.83928 10.52842 11.42290 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007326 B = 0.005995 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3820.962811 B = 4669.771469 C = 7914.265670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.112 4.112 3 C -0.146 4.146 4 C 0.121 3.879 5 N -0.278 5.278 6 C -0.022 4.022 7 C -0.182 4.182 8 C -0.017 4.017 9 C 0.603 3.397 10 O -0.550 6.550 11 N -0.593 5.593 12 C 0.112 3.888 13 C -0.117 4.117 14 C -0.114 4.114 15 H 0.076 0.924 16 C -0.138 4.138 17 C 0.178 3.822 18 N -0.591 5.591 19 C -0.220 4.220 20 H 0.078 0.922 21 C -0.008 4.008 22 N -0.922 5.922 23 Si 0.905 3.095 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.287 1.287 27 C 0.156 3.844 28 H 0.022 0.978 29 C 0.094 3.906 30 N -0.240 5.240 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.059 0.941 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.177 0.823 41 H 0.158 0.842 42 H 0.088 0.912 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.072 0.928 46 H 0.055 0.945 47 H 0.058 0.942 48 H 0.055 0.945 49 H 0.036 0.964 50 H 0.252 0.748 51 H 0.067 0.933 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.586 12.535 7.162 14.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.131 4.131 3 C -0.203 4.203 4 C 0.001 3.999 5 N -0.065 5.065 6 C -0.165 4.165 7 C -0.210 4.210 8 C -0.177 4.177 9 C 0.390 3.610 10 O -0.427 6.427 11 N -0.325 5.325 12 C -0.010 4.010 13 C -0.156 4.156 14 C -0.134 4.134 15 H 0.095 0.905 16 C -0.177 4.177 17 C 0.054 3.946 18 N -0.316 5.316 19 C -0.349 4.349 20 H 0.096 0.904 21 C -0.204 4.204 22 N -0.570 5.570 23 Si 0.736 3.264 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.213 1.213 27 C 0.047 3.953 28 H 0.040 0.960 29 C -0.029 4.029 30 N -0.076 5.076 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.113 0.887 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.195 0.805 41 H 0.176 0.824 42 H 0.106 0.894 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.090 0.910 46 H 0.074 0.926 47 H 0.077 0.923 48 H 0.073 0.927 49 H 0.055 0.945 50 H 0.062 0.938 51 H 0.086 0.914 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.036 12.226 6.490 14.171 hybrid contribution -0.570 0.361 0.852 1.087 sum 2.466 12.587 7.343 14.779 Atomic orbital electron populations 1.21782 0.93609 1.02791 1.02215 1.21451 0.96639 0.96703 0.98307 1.21829 1.01208 0.95359 1.01900 1.22221 0.73619 1.03494 1.00526 1.45781 1.07771 1.40338 1.12632 1.22807 0.89897 1.06281 0.97468 1.21674 0.97776 1.05272 0.96280 1.21914 0.90582 1.07455 0.97705 1.17014 0.86506 0.77788 0.79707 1.90727 1.19576 1.59769 1.72650 1.48132 1.09889 1.52741 1.21765 1.21588 0.91279 0.95855 0.92322 1.21778 0.97472 0.95251 1.01089 1.22307 0.94195 0.97737 0.99135 0.90545 1.22729 0.99944 0.95097 0.99908 1.21526 0.87767 0.90710 0.94646 1.44135 1.00254 1.32973 1.54205 1.18960 0.81552 1.11470 1.22877 0.90424 1.24764 0.97627 0.98113 0.99923 1.69931 1.28460 1.21709 1.36863 0.86298 0.84475 0.77682 0.77965 1.21053 1.21689 1.21343 1.21016 0.88319 0.91530 0.94433 0.96020 1.22537 0.80031 0.96070 1.04267 1.73625 1.05137 1.15549 1.13264 0.92561 0.91725 0.91804 0.88679 0.92774 0.92764 0.92147 0.88390 0.88127 0.80548 0.82397 0.89412 0.91993 0.91503 0.90980 0.92634 0.92327 0.92715 0.94531 0.93785 0.91438 0.85795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.19 37.16 0.34 -1.05 16 2 C -0.11 -1.20 2.95 -90.62 -0.27 -1.47 16 3 C -0.15 -1.40 9.08 37.16 0.34 -1.06 16 4 C 0.12 1.24 5.79 -4.04 -0.02 1.21 16 5 N -0.28 -3.57 2.86 -61.33 -0.18 -3.74 16 6 C -0.02 -0.24 11.40 -17.17 -0.20 -0.44 16 7 C -0.18 -2.50 10.81 -39.37 -0.43 -2.92 16 8 C -0.02 -0.29 6.81 -82.77 -0.56 -0.85 16 9 C 0.60 11.06 7.67 -12.40 -0.10 10.96 16 10 O -0.55 -10.89 16.27 5.30 0.09 -10.81 16 11 N -0.59 -10.49 3.00 -173.81 -0.52 -11.01 16 12 C 0.11 1.73 6.35 -3.52 -0.02 1.70 16 13 C -0.12 -1.77 5.72 -26.80 -0.15 -1.92 16 14 C -0.11 -2.06 2.60 -89.47 -0.23 -2.29 16 15 H 0.08 1.42 8.12 -51.93 -0.42 1.00 16 16 C -0.14 -2.62 6.54 -25.16 -0.16 -2.78 16 17 C 0.18 4.30 5.45 -1.91 -0.01 4.29 16 18 N -0.59 -14.76 3.35 -162.84 -0.54 -15.31 16 19 C -0.22 -5.90 9.88 -15.06 -0.15 -6.05 16 20 H 0.08 2.00 7.43 -52.49 -0.39 1.61 16 21 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 22 N -0.92 -26.65 10.44 55.49 0.58 -26.07 16 23 Si 0.91 21.29 29.55 -169.99 -5.02 16.27 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 26 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 27 C 0.16 3.29 2.79 -67.76 -0.19 3.10 16 28 H 0.02 0.51 7.93 -51.93 -0.41 0.10 16 29 C 0.09 1.81 5.31 -3.89 -0.02 1.79 16 30 N -0.24 -3.88 8.04 33.42 0.27 -3.61 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.09 1.31 7.95 -51.93 -0.41 0.90 16 35 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.05 0.61 7.75 -51.93 -0.40 0.21 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.10 0.67 8.04 -51.93 -0.42 0.26 16 40 H 0.18 1.22 8.06 -52.49 -0.42 0.80 16 41 H 0.16 1.94 8.06 -52.48 -0.42 1.52 16 42 H 0.09 1.34 6.92 -51.93 -0.36 0.98 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.07 1.05 7.99 -51.93 -0.41 0.64 16 45 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.05 1.00 8.12 -51.93 -0.42 0.58 16 47 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.05 1.45 7.21 -51.93 -0.37 1.08 16 49 H 0.04 0.97 7.77 -51.93 -0.40 0.57 16 50 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 51 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 52 H 0.13 2.49 4.02 -64.70 -0.26 2.23 16 LS Contribution 403.77 15.07 6.08 6.08 Total: -1.00 -32.15 403.77 -10.08 -42.22 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -8.90 Total: 4.08 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -1.93 Total: 1.89 kcal Atomic # 7 Polarization: -59.35 SS G_CDS: -0.40 Total: -59.75 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.09 Total: -10.81 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.15 -10.08 -42.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042081251.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.353 kcal (2) G-P(sol) polarization free energy of solvation -32.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds