Wall clock time and date at job start Wed Apr 1 2020 04:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46924 * 2 1 4 4 C 1.52997 * 109.47148 * 120.00563 * 2 1 3 5 5 N 1.46504 * 109.46959 * 174.99665 * 4 2 1 6 6 C 1.35033 * 124.88173 * 124.99677 * 5 4 2 7 7 C 1.35363 * 107.22723 * 179.97438 * 6 5 4 8 8 C 1.41498 * 105.50416 * 359.97438 * 7 6 5 9 9 C 1.47706 * 126.51979 * 179.97438 * 8 7 6 10 10 O 1.21579 * 119.99900 * 352.80449 * 9 8 7 11 11 N 1.34770 * 120.00351 * 172.80184 * 9 8 7 12 12 C 1.46605 * 119.75626 * 173.05017 * 11 9 8 13 13 C 1.53884 * 110.70886 * 132.28159 * 12 11 9 14 14 C 1.51968 * 107.29242 * 51.81020 * 13 12 11 15 15 H 1.09003 * 111.56050 * 56.83600 * 14 13 12 16 16 C 1.53692 * 115.01741 * 184.54144 * 14 13 12 17 17 C 1.55294 * 101.84942 * 153.49602 * 16 14 13 18 18 N 1.48158 * 107.04430 * 337.53188 * 17 16 14 19 19 C 1.36934 * 126.40035 * 175.02071 * 18 17 16 20 20 H 1.07997 * 120.00404 * 180.02562 * 19 18 17 21 21 C 1.38820 * 120.00020 * 0.02617 * 19 18 17 22 22 N 1.31621 * 119.99456 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00202 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46837 * 60.00183 * 23 21 19 25 25 H 1.48504 * 109.46940 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.46964 * 300.00444 * 23 21 19 27 27 C 1.45507 * 107.20406 * 355.00633 * 18 17 16 28 28 H 1.09002 * 109.56977 * 273.36280 * 27 18 17 29 29 C 1.47904 * 120.26722 * 353.52453 * 11 9 8 30 30 N 1.28468 * 124.88805 * 305.24771 * 5 4 2 31 31 H 1.09000 * 109.46987 * 299.99508 * 1 2 3 32 32 H 1.08997 * 109.47319 * 59.99634 * 1 2 3 33 33 H 1.09001 * 109.46875 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.46987 * 240.00492 * 2 1 3 35 35 H 1.09000 * 109.46886 * 60.00431 * 3 2 1 36 36 H 1.09004 * 109.46623 * 180.02562 * 3 2 1 37 37 H 1.08997 * 109.47421 * 300.00303 * 3 2 1 38 38 H 1.08999 * 109.47303 * 55.00265 * 4 2 1 39 39 H 1.08998 * 109.47106 * 294.99814 * 4 2 1 40 40 H 1.08002 * 126.38879 * 359.97438 * 6 5 4 41 41 H 1.08004 * 127.24713 * 179.97438 * 7 6 5 42 42 H 1.08999 * 109.22717 * 11.96295 * 12 11 9 43 43 H 1.08997 * 109.22882 * 252.59568 * 12 11 9 44 44 H 1.09003 * 109.88869 * 292.36574 * 13 12 11 45 45 H 1.09000 * 109.89281 * 171.26127 * 13 12 11 46 46 H 1.09000 * 110.95397 * 35.35044 * 16 14 13 47 47 H 1.08998 * 110.96217 * 271.65117 * 16 14 13 48 48 H 1.09001 * 109.92111 * 96.88102 * 17 16 14 49 49 H 1.08999 * 109.92189 * 217.98562 * 17 16 14 50 50 H 0.97004 * 119.99642 * 180.02562 * 22 21 19 51 51 H 1.08999 * 110.46150 * 112.42243 * 29 11 9 52 52 H 1.08997 * 109.62526 * 350.87821 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 7 3.5001 -0.8265 1.1904 6 6 4.3451 -0.3875 2.1478 7 6 5.6027 -0.6639 1.7300 8 6 5.4535 -1.2921 0.4709 9 6 6.5400 -1.7871 -0.3987 10 8 7.6992 -1.5555 -0.1147 11 7 6.2464 -2.4956 -1.5069 12 6 7.3139 -2.8532 -2.4459 13 6 7.2310 -4.3430 -2.8223 14 6 5.8068 -4.6156 -3.2769 15 1 5.5192 -3.9666 -4.1042 16 6 5.4960 -6.0870 -3.5941 17 6 3.9666 -6.1532 -3.3335 18 7 3.6325 -5.0342 -2.4217 19 6 2.3788 -4.6668 -2.0115 20 1 2.2536 -3.8290 -1.3416 21 6 1.2686 -5.3713 -2.4567 22 7 1.4212 -6.3926 -3.2728 23 14 -0.4417 -4.8706 -1.8966 24 1 -0.7111 -3.4725 -2.3184 25 1 -1.4477 -5.7755 -2.5086 26 1 -0.5257 -4.9662 -0.4170 27 6 4.8855 -4.3986 -2.0434 28 1 5.3079 -4.9103 -1.1786 29 6 4.8518 -2.9036 -1.7832 30 7 4.1609 -1.3455 0.2186 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.1300 1.4425 -0.0005 37 1 1.6766 1.9564 -0.8899 38 1 1.6055 -1.7199 1.2950 39 1 1.7517 -0.1585 2.1369 40 1 4.0692 0.0942 3.0742 41 1 6.5256 -0.4500 2.2486 42 1 8.2805 -2.6529 -1.9838 43 1 7.2158 -2.2491 -3.3479 44 1 7.4675 -4.9585 -1.9543 45 1 7.9270 -4.5601 -3.6327 46 1 6.0355 -6.7531 -2.9208 47 1 5.7248 -6.3184 -4.6344 48 1 3.4246 -6.0415 -4.2726 49 1 3.7100 -7.1047 -2.8678 50 1 0.6454 -6.8847 -3.5842 51 1 4.4681 -2.3802 -2.6588 52 1 4.2288 -2.6891 -0.9149 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042081251.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:56 Heat of formation + Delta-G solvation = 61.999721 kcal Electronic energy + Delta-G solvation = -32697.168371 eV Core-core repulsion = 28698.728763 eV Total energy + Delta-G solvation = -3998.439608 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.67523 -41.28896 -39.62921 -37.43600 -36.70502 -34.77836 -33.46658 -32.73480 -31.67879 -30.81726 -30.11642 -28.15561 -27.93217 -26.48957 -25.53581 -24.21661 -22.87183 -22.42376 -21.75243 -21.38804 -20.96510 -20.19211 -18.65112 -18.33874 -17.70880 -17.27533 -16.85772 -16.70061 -16.29363 -15.96818 -15.70384 -15.65648 -15.18131 -14.89100 -14.70108 -14.62096 -14.39700 -14.15463 -13.97159 -13.81232 -13.73403 -13.39756 -13.16235 -13.11879 -13.07668 -12.89975 -12.68455 -12.51131 -12.22641 -12.15973 -12.10660 -12.00622 -11.94112 -11.72328 -11.59389 -11.50718 -11.35088 -11.27101 -10.71049 -10.63106 -10.17581 -9.99699 -9.65872 -8.88391 -7.81343 -5.16459 0.54510 1.25713 1.43413 1.47876 1.53061 1.53863 1.98977 2.36097 2.52079 3.23591 3.37007 3.49952 3.62106 3.78583 3.84613 3.93704 3.95559 4.00980 4.06634 4.11897 4.29022 4.34609 4.35289 4.41489 4.51282 4.53850 4.62786 4.63262 4.73936 4.75553 4.76368 4.80340 4.87472 4.89429 4.93658 4.94660 4.98910 5.09722 5.12825 5.19041 5.19580 5.31707 5.34704 5.37355 5.48012 5.54462 5.63724 5.68718 5.78596 6.01197 6.19912 6.27165 6.88011 7.10566 7.15974 7.79621 8.48476 9.30196 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007326 B = 0.005995 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3820.962811 B = 4669.771469 C = 7914.265670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.110 4.110 3 C -0.137 4.137 4 C 0.115 3.885 5 N -0.275 5.275 6 C 0.005 3.995 7 C -0.199 4.199 8 C -0.051 4.051 9 C 0.598 3.402 10 O -0.571 6.571 11 N -0.595 5.595 12 C 0.107 3.893 13 C -0.105 4.105 14 C -0.100 4.100 15 H 0.074 0.926 16 C -0.123 4.123 17 C 0.182 3.818 18 N -0.608 5.608 19 C -0.226 4.226 20 H 0.081 0.919 21 C -0.066 4.066 22 N -0.953 5.953 23 Si 0.969 3.031 24 H -0.270 1.270 25 H -0.299 1.299 26 H -0.276 1.276 27 C 0.150 3.850 28 H 0.004 0.996 29 C 0.110 3.890 30 N -0.272 5.272 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.047 0.953 34 H 0.052 0.948 35 H 0.082 0.918 36 H 0.033 0.967 37 H 0.057 0.943 38 H 0.087 0.913 39 H 0.149 0.851 40 H 0.229 0.771 41 H 0.168 0.832 42 H 0.092 0.908 43 H 0.078 0.922 44 H 0.061 0.939 45 H 0.109 0.891 46 H 0.067 0.933 47 H 0.084 0.916 48 H 0.023 0.977 49 H 0.001 0.999 50 H 0.245 0.755 51 H 0.056 0.944 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.629 14.674 8.903 17.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.130 4.130 3 C -0.195 4.195 4 C -0.004 4.004 5 N -0.063 5.063 6 C -0.138 4.138 7 C -0.227 4.227 8 C -0.208 4.208 9 C 0.386 3.614 10 O -0.450 6.450 11 N -0.327 5.327 12 C -0.015 4.015 13 C -0.143 4.143 14 C -0.120 4.120 15 H 0.093 0.907 16 C -0.161 4.161 17 C 0.058 3.942 18 N -0.333 5.333 19 C -0.355 4.355 20 H 0.099 0.901 21 C -0.259 4.259 22 N -0.603 5.603 23 Si 0.797 3.203 24 H -0.196 1.196 25 H -0.225 1.225 26 H -0.202 1.202 27 C 0.042 3.958 28 H 0.021 0.979 29 C -0.014 4.014 30 N -0.109 5.109 31 H 0.105 0.895 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.101 0.899 36 H 0.053 0.947 37 H 0.076 0.924 38 H 0.105 0.895 39 H 0.167 0.833 40 H 0.245 0.755 41 H 0.185 0.815 42 H 0.111 0.889 43 H 0.096 0.904 44 H 0.080 0.920 45 H 0.127 0.873 46 H 0.085 0.915 47 H 0.103 0.897 48 H 0.042 0.958 49 H 0.019 0.981 50 H 0.054 0.946 51 H 0.074 0.926 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.110 14.384 8.230 16.861 hybrid contribution -0.611 -0.274 0.369 0.765 sum 2.498 14.110 8.600 16.712 Atomic orbital electron populations 1.21762 0.92461 1.02204 1.03623 1.21376 0.97524 0.97102 0.96969 1.21758 0.99810 0.94654 1.03240 1.22536 0.72056 1.03664 1.02141 1.46066 1.08794 1.39241 1.12179 1.23509 0.88434 1.03934 0.97928 1.21943 0.99521 1.05742 0.95491 1.21949 0.90602 1.09269 0.99024 1.17331 0.86829 0.77462 0.79796 1.90693 1.20409 1.60691 1.73179 1.48168 1.09536 1.52731 1.22219 1.21783 0.90768 0.96368 0.92535 1.21727 0.95804 0.94773 1.02022 1.22233 0.95500 0.96916 0.97353 0.90721 1.22607 0.95682 0.96024 1.01801 1.21330 0.91297 0.89001 0.92612 1.44393 1.01047 1.33656 1.54225 1.19282 0.82675 1.11139 1.22419 0.90144 1.25593 1.01411 0.98385 1.00505 1.70164 1.28851 1.22928 1.38307 0.85289 0.79523 0.77641 0.77884 1.19567 1.22501 1.20180 1.21098 0.87308 0.92218 0.95215 0.97896 1.22203 0.81159 0.94455 1.03561 1.73493 1.05243 1.17027 1.15123 0.89508 0.91996 0.93348 0.92915 0.89872 0.94739 0.92384 0.89501 0.83303 0.75451 0.81458 0.88944 0.90404 0.92025 0.87284 0.91472 0.89736 0.95832 0.98125 0.94601 0.92564 0.86424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.19 71.98 0.66 -1.78 16 2 C -0.11 -2.24 2.95 -10.79 -0.03 -2.27 16 3 C -0.14 -2.36 9.08 71.98 0.65 -1.71 16 4 C 0.11 2.07 5.79 86.38 0.50 2.57 16 5 N -0.28 -6.62 2.86 -347.95 -1.00 -7.61 16 6 C 0.00 0.09 11.40 83.54 0.95 1.04 16 7 C -0.20 -5.19 10.81 22.41 0.24 -4.94 16 8 C -0.05 -1.71 6.81 42.46 0.29 -1.42 16 9 C 0.60 22.18 7.67 86.75 0.67 22.84 16 10 O -0.57 -22.67 16.27 -3.96 -0.06 -22.74 16 11 N -0.60 -21.19 3.00 -822.08 -2.47 -23.66 16 12 C 0.11 3.17 6.35 86.66 0.55 3.72 16 13 C -0.10 -2.95 5.72 30.55 0.17 -2.77 16 14 C -0.10 -3.56 2.60 -10.05 -0.03 -3.58 16 15 H 0.07 2.70 8.12 -2.39 -0.02 2.68 16 16 C -0.12 -4.59 6.54 31.61 0.21 -4.38 16 17 C 0.18 9.18 5.45 86.85 0.47 9.65 16 18 N -0.61 -31.59 3.35 -669.10 -2.24 -33.83 16 19 C -0.23 -12.56 9.88 84.04 0.83 -11.73 16 20 H 0.08 4.30 7.43 -2.91 -0.02 4.28 16 21 C -0.07 -3.76 5.49 84.86 0.47 -3.29 16 22 N -0.95 -57.49 10.44 21.65 0.23 -57.27 16 23 Si 0.97 44.75 29.55 68.60 2.03 46.78 16 24 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 25 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 26 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 27 C 0.15 6.46 2.79 45.63 0.13 6.59 16 28 H 0.00 0.17 7.93 -2.39 -0.02 0.15 16 29 C 0.11 4.36 5.31 85.71 0.46 4.82 16 30 N -0.27 -8.87 8.04 -48.18 -0.39 -9.25 16 31 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.05 1.51 7.95 -2.39 -0.02 1.49 16 35 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.03 0.73 7.75 -2.39 -0.02 0.71 16 37 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.15 1.24 8.04 -2.39 -0.02 1.22 16 40 H 0.23 1.83 8.06 -2.91 -0.02 1.81 16 41 H 0.17 3.89 8.06 -2.91 -0.02 3.87 16 42 H 0.09 2.70 6.92 -2.39 -0.02 2.69 16 43 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.06 1.83 7.99 -2.39 -0.02 1.81 16 45 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 46 H 0.07 2.36 8.12 -2.39 -0.02 2.34 16 47 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 48 H 0.02 1.31 7.21 -2.39 -0.02 1.29 16 49 H 0.00 0.03 7.77 -2.39 -0.02 0.01 16 50 H 0.24 14.45 8.31 -92.70 -0.77 13.68 16 51 H 0.06 2.32 8.14 -2.39 -0.02 2.31 16 52 H 0.12 4.93 4.02 -18.91 -0.08 4.85 16 Total: -1.00 -75.28 403.77 4.11 -71.17 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: 0.83 Total: 23.07 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: 7.19 Total: 13.34 kcal Atomic # 7 Polarization: -125.75 SS G_CDS: -5.87 Total: -131.62 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -0.06 Total: -22.74 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -75.28 4.11 -71.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042081251.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.170 kcal (2) G-P(sol) polarization free energy of solvation -75.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds