Wall clock time and date at job start Wed Apr 1 2020 04:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47174 * 2 1 4 4 C 1.53006 * 109.46588 * 119.99941 * 2 1 3 5 5 N 1.46498 * 109.46822 * 175.00178 * 4 2 1 6 6 C 1.35035 * 124.88563 * 124.99530 * 5 4 2 7 7 C 1.35367 * 107.22923 * 179.97438 * 6 5 4 8 8 C 1.41497 * 105.50158 * 0.02562 * 7 6 5 9 9 C 1.47712 * 126.51555 * 179.97438 * 8 7 6 10 10 O 1.21576 * 120.00216 * 353.18899 * 9 8 7 11 11 N 1.34781 * 120.00040 * 173.18262 * 9 8 7 12 12 C 1.47149 * 121.21031 * 353.14907 * 11 9 8 13 13 C 1.52843 * 107.97562 * 237.30507 * 12 11 9 14 14 C 1.53092 * 110.57182 * 302.65033 * 13 12 11 15 15 H 1.08998 * 113.05609 * 289.00383 * 14 13 12 16 16 C 1.56032 * 106.39264 * 164.58377 * 14 13 12 17 17 C 1.54502 * 102.60902 * 281.61437 * 16 14 13 18 18 N 1.47428 * 107.14944 * 337.15850 * 17 16 14 19 19 C 1.36944 * 126.05758 * 178.35204 * 18 17 16 20 20 H 1.07993 * 120.00070 * 180.02562 * 19 18 17 21 21 C 1.38809 * 120.00009 * 0.02655 * 19 18 17 22 22 N 1.31622 * 120.00178 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00115 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46749 * 60.00259 * 23 21 19 25 25 H 1.48498 * 109.47192 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47319 * 300.00339 * 23 21 19 27 27 C 1.46460 * 107.88408 * 358.37248 * 18 17 16 28 28 H 1.08994 * 108.42605 * 270.10954 * 27 18 17 29 29 C 1.46753 * 121.21597 * 173.17387 * 11 9 8 30 30 N 1.28466 * 124.88653 * 305.24735 * 5 4 2 31 31 H 1.09000 * 109.47515 * 300.00382 * 1 2 3 32 32 H 1.09006 * 109.47219 * 60.00237 * 1 2 3 33 33 H 1.09005 * 109.47456 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47515 * 239.99618 * 2 1 3 35 35 H 1.09000 * 109.47211 * 59.99433 * 3 2 1 36 36 H 1.08998 * 109.47069 * 179.97438 * 3 2 1 37 37 H 1.08994 * 109.47113 * 299.99656 * 3 2 1 38 38 H 1.08991 * 109.47155 * 54.99694 * 4 2 1 39 39 H 1.09001 * 109.47077 * 294.99898 * 4 2 1 40 40 H 1.08002 * 126.38561 * 359.97438 * 6 5 4 41 41 H 1.08004 * 127.24451 * 179.97438 * 7 6 5 42 42 H 1.09007 * 109.75998 * 117.69017 * 12 11 9 43 43 H 1.08997 * 109.76815 * 356.92915 * 12 11 9 44 44 H 1.08998 * 109.25259 * 182.36854 * 13 12 11 45 45 H 1.08997 * 109.25446 * 62.93693 * 13 12 11 46 46 H 1.08996 * 110.77739 * 163.33514 * 16 14 13 47 47 H 1.09002 * 110.94210 * 39.97375 * 16 14 13 48 48 H 1.08995 * 109.89923 * 217.77464 * 17 16 14 49 49 H 1.09005 * 110.04993 * 96.62330 * 17 16 14 50 50 H 0.96999 * 120.00095 * 179.97438 * 22 21 19 51 51 H 1.09006 * 109.22629 * 7.14520 * 29 11 9 52 52 H 1.08996 * 109.22638 * 247.78461 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.4999 -0.8264 1.1907 6 6 4.3449 -0.3873 2.1482 7 6 5.6025 -0.6637 1.7305 8 6 5.4534 -1.2909 0.4709 9 6 6.5400 -1.7856 -0.3988 10 8 7.6995 -1.5605 -0.1106 11 7 6.2462 -2.4867 -1.5117 12 6 4.8664 -2.9030 -1.8086 13 6 4.8541 -4.4242 -1.9564 14 6 5.8301 -4.8663 -3.0499 15 1 5.4914 -4.6095 -4.0536 16 6 6.0434 -6.3998 -2.8560 17 6 7.0358 -6.4553 -1.6732 18 7 7.7389 -5.1601 -1.6344 19 6 8.6819 -4.7819 -0.7162 20 1 9.1362 -3.8043 -0.7801 21 6 9.0539 -5.6553 0.2965 22 7 8.4999 -6.8467 0.3747 23 14 10.3408 -5.1398 1.5486 24 1 9.8712 -3.9309 2.2720 25 1 10.5577 -6.2432 2.5185 26 1 11.6159 -4.8353 0.8512 27 6 7.2496 -4.3491 -2.7516 28 1 7.8774 -4.5456 -3.6207 29 6 7.2907 -2.8633 -2.4714 30 7 4.1608 -1.3454 0.2190 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.6766 1.9564 0.8899 36 1 3.1300 1.4425 0.0005 37 1 1.6767 1.9563 -0.8900 38 1 1.6052 -1.7197 1.2953 39 1 1.7515 -0.1583 2.1370 40 1 4.0688 0.0945 3.0745 41 1 6.5253 -0.4497 2.2491 42 1 4.5335 -2.4398 -2.7375 43 1 4.2082 -2.6067 -0.9919 44 1 3.8480 -4.7517 -2.2186 45 1 5.1444 -4.8797 -1.0097 46 1 6.4810 -6.8453 -3.7493 47 1 5.1066 -6.8939 -2.5984 48 1 7.7524 -7.2620 -1.8277 49 1 6.4960 -6.6126 -0.7394 50 1 8.7601 -7.4571 1.0822 51 1 8.2662 -2.6023 -2.0609 52 1 7.1362 -2.3179 -3.4024 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042081252.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:02 Heat of formation + Delta-G solvation = 83.418551 kcal Electronic energy + Delta-G solvation = -32703.333456 eV Core-core repulsion = 28705.822638 eV Total energy + Delta-G solvation = -3997.510818 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.59559 -39.61595 -37.80105 -36.73367 -34.82118 -32.69010 -32.25769 -31.07358 -30.61164 -29.05662 -28.22606 -27.58846 -26.91420 -24.58370 -24.12525 -22.39372 -22.30022 -21.31247 -20.44327 -19.87647 -19.45328 -18.26746 -17.25350 -16.44169 -16.39661 -16.29652 -15.26183 -15.24499 -14.71563 -14.50863 -14.24454 -13.88083 -13.78511 -13.64483 -13.58504 -13.33297 -12.98515 -12.83201 -12.71415 -12.66131 -12.45351 -12.32171 -11.83909 -11.57398 -11.51313 -11.41449 -11.30585 -11.22712 -11.13242 -10.74616 -10.70157 -10.61866 -10.30014 -9.99734 -9.73473 -9.66546 -9.53629 -9.35445 -9.27679 -9.02010 -8.88136 -8.39833 -7.90854 -6.63571 -5.51418 -2.82658 1.82943 2.34909 2.44041 3.57450 3.58632 3.60313 3.67690 3.99082 4.10070 4.36766 4.56732 4.65538 4.70501 4.83142 4.88958 5.05371 5.15587 5.22194 5.24602 5.37693 5.40224 5.43477 5.49640 5.51846 5.67455 5.67894 5.75753 5.80584 5.86114 5.87740 5.89624 5.90981 5.95434 6.05115 6.14873 6.22331 6.29878 6.40739 6.42941 6.55941 6.61096 6.67607 6.74702 6.86407 6.91571 7.11309 7.32541 7.73464 7.76703 7.96615 8.04144 8.15639 8.43171 8.84696 9.42456 10.03405 10.67703 11.61140 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012341 B = 0.003880 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.308374 B = 7215.047091 C = 8386.203516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.110 4.110 3 C -0.148 4.148 4 C 0.125 3.875 5 N -0.287 5.287 6 C -0.022 4.022 7 C -0.179 4.179 8 C 0.003 3.997 9 C 0.603 3.397 10 O -0.526 6.526 11 N -0.581 5.581 12 C 0.091 3.909 13 C -0.119 4.119 14 C -0.102 4.102 15 H 0.074 0.926 16 C -0.144 4.144 17 C 0.179 3.821 18 N -0.588 5.588 19 C -0.208 4.208 20 H 0.083 0.917 21 C -0.010 4.010 22 N -0.929 5.929 23 Si 0.905 3.095 24 H -0.283 1.283 25 H -0.294 1.294 26 H -0.287 1.287 27 C 0.155 3.845 28 H 0.025 0.975 29 C 0.113 3.887 30 N -0.261 5.261 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.177 0.823 41 H 0.160 0.840 42 H 0.055 0.945 43 H 0.121 0.879 44 H 0.057 0.943 45 H 0.077 0.923 46 H 0.052 0.948 47 H 0.057 0.943 48 H 0.040 0.960 49 H 0.044 0.956 50 H 0.248 0.752 51 H 0.095 0.905 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.094 13.790 -1.513 23.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.129 4.129 3 C -0.205 4.205 4 C 0.004 3.996 5 N -0.074 5.074 6 C -0.164 4.164 7 C -0.207 4.207 8 C -0.157 4.157 9 C 0.389 3.611 10 O -0.400 6.400 11 N -0.313 5.313 12 C -0.032 4.032 13 C -0.158 4.158 14 C -0.121 4.121 15 H 0.092 0.908 16 C -0.182 4.182 17 C 0.055 3.945 18 N -0.313 5.313 19 C -0.337 4.337 20 H 0.100 0.900 21 C -0.205 4.205 22 N -0.578 5.578 23 Si 0.736 3.264 24 H -0.210 1.210 25 H -0.220 1.220 26 H -0.214 1.214 27 C 0.046 3.954 28 H 0.043 0.957 29 C -0.010 4.010 30 N -0.096 5.096 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.108 0.892 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.110 0.890 39 H 0.118 0.882 40 H 0.194 0.806 41 H 0.177 0.823 42 H 0.073 0.927 43 H 0.138 0.862 44 H 0.075 0.925 45 H 0.095 0.905 46 H 0.071 0.929 47 H 0.076 0.924 48 H 0.058 0.942 49 H 0.062 0.938 50 H 0.058 0.942 51 H 0.113 0.887 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.228 13.474 -1.916 23.557 hybrid contribution 1.138 0.269 1.405 1.828 sum -18.090 13.743 -0.511 22.724 Atomic orbital electron populations 1.21784 0.93729 1.02366 1.02430 1.21440 0.96353 0.96989 0.98134 1.21836 1.01577 0.95168 1.01962 1.22113 0.74149 1.02874 1.00447 1.45647 1.07367 1.41430 1.12977 1.22765 0.89918 1.06424 0.97323 1.21775 0.97909 1.04672 0.96308 1.22130 0.90323 1.05685 0.97515 1.16823 0.86399 0.78280 0.79616 1.90782 1.19313 1.58677 1.71263 1.47565 1.08893 1.52935 1.21898 1.22320 0.83512 0.94852 1.02565 1.21803 0.97962 0.95395 1.00611 1.22379 0.96060 0.96542 0.97155 0.90801 1.23162 0.99933 0.94843 1.00288 1.21199 0.91856 0.88182 0.93313 1.44287 1.45182 1.11939 1.29889 1.19042 1.11985 0.99219 1.03410 0.89956 1.24684 1.00363 0.96390 0.99043 1.69959 1.45856 1.07292 1.34652 0.86267 0.81519 0.77148 0.81438 1.20954 1.22045 1.21353 1.20686 0.92518 0.90088 0.92085 0.95749 1.21436 0.92861 0.96095 0.90616 1.73292 1.05434 1.17239 1.13631 0.92416 0.91814 0.92103 0.89178 0.92652 0.92495 0.92181 0.88970 0.88207 0.80593 0.82268 0.92690 0.86222 0.92463 0.90458 0.92872 0.92449 0.94218 0.93797 0.94185 0.88707 0.92763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.19 37.16 0.34 -0.37 16 2 C -0.11 -0.76 2.95 -90.62 -0.27 -1.03 16 3 C -0.15 -1.08 9.08 37.16 0.34 -0.74 16 4 C 0.12 0.90 5.79 -4.04 -0.02 0.88 16 5 N -0.29 -3.29 2.86 -61.33 -0.18 -3.47 16 6 C -0.02 -0.25 11.40 -17.17 -0.20 -0.44 16 7 C -0.18 -2.76 10.81 -39.36 -0.43 -3.19 16 8 C 0.00 0.06 6.85 -82.77 -0.57 -0.50 16 9 C 0.60 12.86 7.71 -12.39 -0.10 12.77 16 10 O -0.53 -13.02 16.40 5.30 0.09 -12.93 16 11 N -0.58 -11.41 2.97 -175.25 -0.52 -11.93 16 12 C 0.09 1.49 6.19 -3.77 -0.02 1.47 16 13 C -0.12 -2.07 5.04 -26.76 -0.14 -2.20 16 14 C -0.10 -1.81 3.68 -88.43 -0.33 -2.13 16 15 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 16 C -0.14 -2.75 6.32 -24.32 -0.15 -2.91 16 17 C 0.18 4.47 4.61 -2.75 -0.01 4.45 16 18 N -0.59 -15.26 3.20 -164.43 -0.53 -15.79 16 19 C -0.21 -6.08 9.70 -15.06 -0.15 -6.22 16 20 H 0.08 2.46 6.51 -52.49 -0.34 2.11 16 21 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 22 N -0.93 -28.55 10.38 55.49 0.58 -27.98 16 23 Si 0.91 24.25 29.55 -169.99 -5.02 19.23 16 24 H -0.28 -7.71 7.11 56.52 0.40 -7.31 16 25 H -0.29 -7.83 7.11 56.52 0.40 -7.42 16 26 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 27 C 0.15 3.27 2.97 -68.30 -0.20 3.06 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 C 0.11 2.27 5.69 -4.78 -0.03 2.24 16 30 N -0.26 -3.86 8.07 33.42 0.27 -3.59 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.09 0.79 7.95 -51.93 -0.41 0.38 16 35 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.06 0.55 7.75 -51.93 -0.40 0.15 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.10 0.46 8.04 -51.93 -0.42 0.04 16 40 H 0.18 1.28 8.06 -52.49 -0.42 0.85 16 41 H 0.16 2.42 8.06 -52.48 -0.42 2.00 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.12 1.93 4.13 -69.67 -0.29 1.64 16 44 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.08 1.66 6.86 -51.93 -0.36 1.31 16 46 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 47 H 0.06 1.00 7.98 -51.93 -0.41 0.58 16 48 H 0.04 1.10 7.57 -51.93 -0.39 0.71 16 49 H 0.04 1.22 7.04 -51.93 -0.37 0.86 16 50 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 51 H 0.09 2.18 5.52 -51.93 -0.29 1.89 16 52 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 399.71 15.07 6.02 6.02 Total: -1.00 -35.61 399.71 -10.04 -45.65 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -8.73 Total: 0.03 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: -2.02 Total: 4.76 kcal Atomic # 7 Polarization: -62.38 SS G_CDS: -0.38 Total: -62.75 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.09 Total: -12.93 kcal Atomic # 14 Polarization: 24.25 SS G_CDS: -5.02 Total: 19.23 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.61 -10.04 -45.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042081252.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.064 kcal (2) G-P(sol) polarization free energy of solvation -35.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds