Wall clock time and date at job start Wed Apr 1 2020 04:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47174 * 2 1 4 4 C 1.53006 * 109.46588 * 119.99941 * 2 1 3 5 5 N 1.46498 * 109.46822 * 175.00178 * 4 2 1 6 6 C 1.35035 * 124.88563 * 124.99530 * 5 4 2 7 7 C 1.35367 * 107.22923 * 179.97438 * 6 5 4 8 8 C 1.41497 * 105.50158 * 0.02562 * 7 6 5 9 9 C 1.47712 * 126.51555 * 179.97438 * 8 7 6 10 10 O 1.21576 * 120.00216 * 353.18899 * 9 8 7 11 11 N 1.34781 * 120.00040 * 173.18262 * 9 8 7 12 12 C 1.47149 * 121.21031 * 353.14907 * 11 9 8 13 13 C 1.52843 * 107.97562 * 237.30507 * 12 11 9 14 14 C 1.53092 * 110.57182 * 302.65033 * 13 12 11 15 15 H 1.08998 * 113.05609 * 289.00383 * 14 13 12 16 16 C 1.56032 * 106.39264 * 164.58377 * 14 13 12 17 17 C 1.54502 * 102.60902 * 281.61437 * 16 14 13 18 18 N 1.47428 * 107.14944 * 337.15850 * 17 16 14 19 19 C 1.36944 * 126.05758 * 178.35204 * 18 17 16 20 20 H 1.07993 * 120.00070 * 180.02562 * 19 18 17 21 21 C 1.38809 * 120.00009 * 0.02655 * 19 18 17 22 22 N 1.31622 * 120.00178 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00115 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46749 * 60.00259 * 23 21 19 25 25 H 1.48498 * 109.47192 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47319 * 300.00339 * 23 21 19 27 27 C 1.46460 * 107.88408 * 358.37248 * 18 17 16 28 28 H 1.08994 * 108.42605 * 270.10954 * 27 18 17 29 29 C 1.46753 * 121.21597 * 173.17387 * 11 9 8 30 30 N 1.28466 * 124.88653 * 305.24735 * 5 4 2 31 31 H 1.09000 * 109.47515 * 300.00382 * 1 2 3 32 32 H 1.09006 * 109.47219 * 60.00237 * 1 2 3 33 33 H 1.09005 * 109.47456 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47515 * 239.99618 * 2 1 3 35 35 H 1.09000 * 109.47211 * 59.99433 * 3 2 1 36 36 H 1.08998 * 109.47069 * 179.97438 * 3 2 1 37 37 H 1.08994 * 109.47113 * 299.99656 * 3 2 1 38 38 H 1.08991 * 109.47155 * 54.99694 * 4 2 1 39 39 H 1.09001 * 109.47077 * 294.99898 * 4 2 1 40 40 H 1.08002 * 126.38561 * 359.97438 * 6 5 4 41 41 H 1.08004 * 127.24451 * 179.97438 * 7 6 5 42 42 H 1.09007 * 109.75998 * 117.69017 * 12 11 9 43 43 H 1.08997 * 109.76815 * 356.92915 * 12 11 9 44 44 H 1.08998 * 109.25259 * 182.36854 * 13 12 11 45 45 H 1.08997 * 109.25446 * 62.93693 * 13 12 11 46 46 H 1.08996 * 110.77739 * 163.33514 * 16 14 13 47 47 H 1.09002 * 110.94210 * 39.97375 * 16 14 13 48 48 H 1.08995 * 109.89923 * 217.77464 * 17 16 14 49 49 H 1.09005 * 110.04993 * 96.62330 * 17 16 14 50 50 H 0.96999 * 120.00095 * 179.97438 * 22 21 19 51 51 H 1.09006 * 109.22629 * 7.14520 * 29 11 9 52 52 H 1.08996 * 109.22638 * 247.78461 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.4999 -0.8264 1.1907 6 6 4.3449 -0.3873 2.1482 7 6 5.6025 -0.6637 1.7305 8 6 5.4534 -1.2909 0.4709 9 6 6.5400 -1.7856 -0.3988 10 8 7.6995 -1.5605 -0.1106 11 7 6.2462 -2.4867 -1.5117 12 6 4.8664 -2.9030 -1.8086 13 6 4.8541 -4.4242 -1.9564 14 6 5.8301 -4.8663 -3.0499 15 1 5.4914 -4.6095 -4.0536 16 6 6.0434 -6.3998 -2.8560 17 6 7.0358 -6.4553 -1.6732 18 7 7.7389 -5.1601 -1.6344 19 6 8.6819 -4.7819 -0.7162 20 1 9.1362 -3.8043 -0.7801 21 6 9.0539 -5.6553 0.2965 22 7 8.4999 -6.8467 0.3747 23 14 10.3408 -5.1398 1.5486 24 1 9.8712 -3.9309 2.2720 25 1 10.5577 -6.2432 2.5185 26 1 11.6159 -4.8353 0.8512 27 6 7.2496 -4.3491 -2.7516 28 1 7.8774 -4.5456 -3.6207 29 6 7.2907 -2.8633 -2.4714 30 7 4.1608 -1.3454 0.2190 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.6766 1.9564 0.8899 36 1 3.1300 1.4425 0.0005 37 1 1.6767 1.9563 -0.8900 38 1 1.6052 -1.7197 1.2953 39 1 1.7515 -0.1583 2.1370 40 1 4.0688 0.0945 3.0745 41 1 6.5253 -0.4497 2.2491 42 1 4.5335 -2.4398 -2.7375 43 1 4.2082 -2.6067 -0.9919 44 1 3.8480 -4.7517 -2.2186 45 1 5.1444 -4.8797 -1.0097 46 1 6.4810 -6.8453 -3.7493 47 1 5.1066 -6.8939 -2.5984 48 1 7.7524 -7.2620 -1.8277 49 1 6.4960 -6.6126 -0.7394 50 1 8.7601 -7.4571 1.0822 51 1 8.2662 -2.6023 -2.0609 52 1 7.1362 -2.3179 -3.4024 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042081252.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:01 Heat of formation + Delta-G solvation = 60.850249 kcal Electronic energy + Delta-G solvation = -32704.312091 eV Core-core repulsion = 28705.822638 eV Total energy + Delta-G solvation = -3998.489453 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.65813 -41.20095 -39.44892 -37.37290 -36.53335 -34.65255 -33.30214 -32.72658 -31.81739 -30.66902 -30.04292 -28.09433 -27.81336 -26.49142 -25.71332 -23.91038 -23.57987 -22.33808 -21.72586 -21.27006 -20.72900 -19.78338 -18.48969 -18.34902 -17.69820 -17.22662 -16.97450 -16.52427 -16.18250 -15.96722 -15.75734 -15.50137 -15.25978 -14.71791 -14.56289 -14.51700 -14.27811 -14.13879 -14.03452 -13.86740 -13.68434 -13.19842 -13.11328 -13.07628 -12.95233 -12.82983 -12.64528 -12.61978 -12.35497 -12.16741 -12.08192 -11.93237 -11.84614 -11.65729 -11.57071 -11.37672 -11.24746 -11.15489 -10.70947 -10.64328 -10.14006 -9.99500 -9.44071 -8.78827 -7.81953 -5.11779 0.60090 1.23609 1.35061 1.39889 1.47438 1.55552 2.15455 2.49861 2.51523 3.28654 3.36392 3.54495 3.74117 3.86168 3.89567 3.93717 4.01239 4.05303 4.14002 4.16077 4.35480 4.43200 4.49303 4.52661 4.58298 4.62079 4.68045 4.68768 4.72943 4.77474 4.79620 4.82652 4.89755 4.95208 4.99839 5.04061 5.04407 5.14575 5.16231 5.24467 5.29286 5.35339 5.41830 5.44399 5.55364 5.65005 5.72182 5.76696 5.82486 6.02942 6.24995 6.53897 6.94023 7.17070 7.30412 7.85022 8.47926 9.28729 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012341 B = 0.003880 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.308374 B = 7215.047091 C = 8386.203516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.105 4.105 3 C -0.146 4.146 4 C 0.112 3.888 5 N -0.272 5.272 6 C 0.008 3.992 7 C -0.215 4.215 8 C -0.038 4.038 9 C 0.589 3.411 10 O -0.582 6.582 11 N -0.584 5.584 12 C 0.091 3.909 13 C -0.113 4.113 14 C -0.085 4.085 15 H 0.124 0.876 16 C -0.128 4.128 17 C 0.187 3.813 18 N -0.605 5.605 19 C -0.202 4.202 20 H 0.067 0.933 21 C -0.066 4.066 22 N -0.951 5.951 23 Si 0.956 3.044 24 H -0.294 1.294 25 H -0.288 1.288 26 H -0.279 1.279 27 C 0.142 3.858 28 H 0.031 0.969 29 C 0.115 3.885 30 N -0.256 5.256 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.027 0.973 37 H 0.061 0.939 38 H 0.103 0.897 39 H 0.138 0.862 40 H 0.227 0.773 41 H 0.147 0.853 42 H 0.090 0.910 43 H 0.124 0.876 44 H 0.097 0.903 45 H 0.026 0.974 46 H 0.071 0.929 47 H 0.080 0.920 48 H 0.000 1.000 49 H 0.003 0.997 50 H 0.242 0.758 51 H 0.054 0.946 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.342 15.248 -2.358 27.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.124 4.124 3 C -0.203 4.203 4 C -0.006 4.006 5 N -0.060 5.060 6 C -0.135 4.135 7 C -0.243 4.243 8 C -0.196 4.196 9 C 0.377 3.623 10 O -0.461 6.461 11 N -0.314 5.314 12 C -0.031 4.031 13 C -0.152 4.152 14 C -0.104 4.104 15 H 0.142 0.858 16 C -0.167 4.167 17 C 0.062 3.938 18 N -0.330 5.330 19 C -0.332 4.332 20 H 0.085 0.915 21 C -0.258 4.258 22 N -0.602 5.602 23 Si 0.786 3.214 24 H -0.222 1.222 25 H -0.214 1.214 26 H -0.205 1.205 27 C 0.035 3.965 28 H 0.048 0.952 29 C -0.009 4.009 30 N -0.094 5.094 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.047 0.953 37 H 0.080 0.920 38 H 0.122 0.878 39 H 0.156 0.844 40 H 0.244 0.756 41 H 0.165 0.835 42 H 0.108 0.892 43 H 0.141 0.859 44 H 0.116 0.884 45 H 0.045 0.955 46 H 0.089 0.911 47 H 0.099 0.901 48 H 0.018 0.982 49 H 0.022 0.978 50 H 0.051 0.949 51 H 0.072 0.928 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -23.522 14.933 -2.819 28.004 hybrid contribution 2.339 -0.091 1.651 2.864 sum -21.183 14.842 -1.168 25.892 Atomic orbital electron populations 1.21743 0.91750 1.02954 1.03279 1.21386 0.97811 0.96252 0.96998 1.21822 0.99645 0.95794 1.03063 1.22655 0.71172 1.04387 1.02349 1.46138 1.09008 1.39046 1.11824 1.23331 0.88099 1.04032 0.98053 1.21915 0.99618 1.06512 0.96298 1.21783 0.90799 1.08579 0.98440 1.17451 0.86730 0.78028 0.80113 1.90724 1.21678 1.60957 1.72711 1.47757 1.10107 1.52246 1.21328 1.22541 0.81731 0.94406 1.04395 1.21751 0.99808 0.95572 0.98020 1.22442 0.93598 0.94687 0.99679 0.85834 1.23026 0.99096 0.96594 0.97944 1.20957 0.91756 0.86706 0.94369 1.44481 1.44805 1.13364 1.30373 1.19100 1.12066 0.98195 1.03806 0.91502 1.25321 1.02682 0.96833 1.00997 1.70150 1.47118 1.07908 1.35038 0.85464 0.79961 0.76283 0.79664 1.22161 1.21358 1.20519 1.21013 0.94975 0.90225 0.90256 0.95185 1.21366 0.91560 0.95879 0.92081 1.73139 1.04103 1.17399 1.14721 0.90807 0.91786 0.91658 0.91340 0.90734 0.95338 0.92036 0.87844 0.84368 0.75629 0.83478 0.89220 0.85858 0.88428 0.95528 0.91075 0.90120 0.98198 0.97829 0.94918 0.92760 0.88719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 9.19 71.98 0.66 -0.15 16 2 C -0.11 -1.11 2.95 -10.79 -0.03 -1.14 16 3 C -0.15 -1.71 9.08 71.98 0.65 -1.06 16 4 C 0.11 1.17 5.79 86.38 0.50 1.67 16 5 N -0.27 -5.57 2.86 -347.95 -1.00 -6.57 16 6 C 0.01 0.17 11.40 83.54 0.95 1.12 16 7 C -0.22 -6.81 10.81 22.41 0.24 -6.57 16 8 C -0.04 -1.41 6.85 42.46 0.29 -1.12 16 9 C 0.59 26.51 7.71 86.75 0.67 27.18 16 10 O -0.58 -31.21 16.40 -3.96 -0.06 -31.28 16 11 N -0.58 -23.19 2.97 -826.64 -2.45 -25.65 16 12 C 0.09 2.82 6.19 86.20 0.53 3.35 16 13 C -0.11 -3.65 5.04 30.57 0.15 -3.50 16 14 C -0.08 -2.75 3.68 -9.37 -0.03 -2.78 16 15 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 16 C -0.13 -4.66 6.32 32.16 0.20 -4.45 16 17 C 0.19 9.66 4.61 86.71 0.40 10.06 16 18 N -0.61 -32.64 3.20 -674.15 -2.15 -34.79 16 19 C -0.20 -12.45 9.70 84.03 0.81 -11.64 16 20 H 0.07 4.28 6.51 -2.91 -0.02 4.26 16 21 C -0.07 -4.18 5.49 84.86 0.47 -3.72 16 22 N -0.95 -61.63 10.38 21.65 0.22 -61.40 16 23 Si 0.96 52.49 29.55 68.60 2.03 54.51 16 24 H -0.29 -16.55 7.11 99.48 0.71 -15.84 16 25 H -0.29 -15.34 7.11 99.48 0.71 -14.64 16 26 H -0.28 -14.78 7.11 99.48 0.71 -14.07 16 27 C 0.14 5.95 2.97 44.77 0.13 6.08 16 28 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 29 C 0.11 4.63 5.69 85.76 0.49 5.12 16 30 N -0.26 -7.35 8.07 -48.18 -0.39 -7.74 16 31 H 0.07 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.06 0.40 8.14 -2.38 -0.02 0.38 16 33 H 0.06 0.35 8.14 -2.38 -0.02 0.33 16 34 H 0.07 1.04 7.95 -2.39 -0.02 1.02 16 35 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.03 0.50 7.75 -2.39 -0.02 0.48 16 37 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.14 0.46 8.04 -2.39 -0.02 0.44 16 40 H 0.23 2.20 8.06 -2.91 -0.02 2.17 16 41 H 0.15 4.84 8.06 -2.91 -0.02 4.81 16 42 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 43 H 0.12 3.79 4.13 -25.34 -0.10 3.68 16 44 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 45 H 0.03 1.13 6.86 -2.39 -0.02 1.11 16 46 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 47 H 0.08 2.58 7.98 -2.39 -0.02 2.56 16 48 H 0.00 -0.01 7.57 -2.39 -0.02 -0.03 16 49 H 0.00 0.20 7.04 -2.38 -0.02 0.19 16 50 H 0.24 15.34 8.31 -92.71 -0.77 14.57 16 51 H 0.05 2.64 5.52 -2.38 -0.01 2.63 16 52 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 Total: -1.00 -88.07 399.71 4.10 -83.97 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 0.81 Total: 10.49 kcal Atomic # 6 Polarization: 11.36 SS G_CDS: 7.10 Total: 18.45 kcal Atomic # 7 Polarization: -130.38 SS G_CDS: -5.77 Total: -136.15 kcal Atomic # 8 Polarization: -31.21 SS G_CDS: -0.06 Total: -31.28 kcal Atomic # 14 Polarization: 52.49 SS G_CDS: 2.03 Total: 54.51 kcal Total: -88.07 4.10 -83.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042081252.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.824 kcal (2) G-P(sol) polarization free energy of solvation -88.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds