Wall clock time and date at job start Wed Apr 1 2020 04:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47439 * 2 1 4 4 C 1.53006 * 109.47026 * 119.99686 * 2 1 3 5 5 N 1.46500 * 109.47046 * 175.00162 * 4 2 1 6 6 C 1.35029 * 124.88376 * 125.00410 * 5 4 2 7 7 C 1.35366 * 107.23078 * 180.02562 * 6 5 4 8 8 C 1.41506 * 105.50088 * 359.97438 * 7 6 5 9 9 C 1.47707 * 126.51861 * 179.97438 * 8 7 6 10 10 O 1.21571 * 120.00235 * 352.63948 * 9 8 7 11 11 N 1.34780 * 119.99922 * 172.63348 * 9 8 7 12 12 C 1.46588 * 119.75007 * 353.16550 * 11 9 8 13 13 C 1.53883 * 110.71095 * 227.73282 * 12 11 9 14 14 C 1.52007 * 107.28416 * 308.19983 * 13 12 11 15 15 H 1.08994 * 110.99536 * 303.47724 * 14 13 12 16 16 C 1.53697 * 115.01825 * 175.44660 * 14 13 12 17 17 C 1.55299 * 101.81699 * 206.51694 * 16 14 13 18 18 N 1.48162 * 107.04000 * 22.44936 * 17 16 14 19 19 C 1.36932 * 126.39639 * 184.98331 * 18 17 16 20 20 H 1.07995 * 120.00201 * 180.02562 * 19 18 17 21 21 C 1.38821 * 120.00073 * 0.02562 * 19 18 17 22 22 N 1.31614 * 119.99954 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99930 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47307 * 60.00073 * 23 21 19 25 25 H 1.48498 * 109.46890 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47163 * 299.99713 * 23 21 19 27 27 C 1.45507 * 107.20609 * 4.99808 * 18 17 16 28 28 H 1.08998 * 108.99594 * 86.37253 * 27 18 17 29 29 C 1.47803 * 119.74856 * 173.14304 * 11 9 8 30 30 N 1.28470 * 124.88395 * 305.32573 * 5 4 2 31 31 H 1.08994 * 109.47054 * 300.00339 * 1 2 3 32 32 H 1.08998 * 109.46728 * 60.00008 * 1 2 3 33 33 H 1.08994 * 109.47140 * 179.97438 * 1 2 3 34 34 H 1.08995 * 109.47510 * 239.99395 * 2 1 3 35 35 H 1.09006 * 109.47029 * 300.00073 * 3 2 1 36 36 H 1.09003 * 109.46933 * 59.99311 * 3 2 1 37 37 H 1.08994 * 109.47575 * 179.97438 * 3 2 1 38 38 H 1.08999 * 109.46982 * 54.99780 * 4 2 1 39 39 H 1.08998 * 109.46870 * 295.00420 * 4 2 1 40 40 H 1.08002 * 126.39037 * 0.02562 * 6 5 4 41 41 H 1.07996 * 127.25440 * 179.97438 * 7 6 5 42 42 H 1.08996 * 109.23153 * 348.05040 * 12 11 9 43 43 H 1.09004 * 109.22874 * 107.45675 * 12 11 9 44 44 H 1.08998 * 109.89419 * 67.63922 * 13 12 11 45 45 H 1.09003 * 109.89585 * 188.67768 * 13 12 11 46 46 H 1.08990 * 110.96233 * 324.65213 * 16 14 13 47 47 H 1.09001 * 110.95957 * 88.38824 * 16 14 13 48 48 H 1.09002 * 109.92098 * 141.79373 * 17 16 14 49 49 H 1.09000 * 109.92456 * 262.89785 * 17 16 14 50 50 H 0.96997 * 120.00401 * 180.02562 * 22 21 19 51 51 H 1.08994 * 110.06259 * 9.53145 * 29 11 9 52 52 H 1.09004 * 110.15191 * 248.01850 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.3449 -0.3873 2.1481 7 6 5.6026 -0.6626 1.7299 8 6 5.4535 -1.2902 0.4705 9 6 6.5402 -1.7840 -0.3997 10 8 7.6991 -1.5492 -0.1175 11 7 6.2468 -2.4950 -1.5064 12 6 4.8626 -2.9039 -1.7627 13 6 4.7964 -4.3943 -2.1400 14 6 5.7915 -4.6195 -3.2668 15 1 5.5809 -3.9628 -4.1109 16 6 5.9505 -6.0823 -3.7108 17 6 7.3967 -6.0874 -4.2768 18 7 8.1089 -4.9446 -3.6589 19 6 9.3791 -4.5248 -3.9510 20 1 9.7991 -3.6746 -3.4343 21 6 10.1270 -5.1921 -4.9115 22 7 9.6150 -6.2279 -5.5417 23 14 11.8600 -4.6198 -5.3095 24 1 12.6989 -4.6938 -4.0864 25 1 12.4400 -5.4925 -6.3617 26 1 11.8186 -3.2178 -5.7973 27 6 7.2065 -4.3518 -2.6834 28 1 7.3151 -4.8772 -1.7345 29 6 7.3232 -2.8562 -2.4528 30 7 4.1609 -1.3441 0.2183 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 3.1300 1.4425 0.0005 38 1 1.6053 -1.7197 1.2953 39 1 1.7515 -0.1582 2.1370 40 1 4.0689 0.0938 3.0748 41 1 6.5255 -0.4483 2.2483 42 1 4.2662 -2.7337 -0.8664 43 1 4.4582 -2.3086 -2.5813 44 1 5.0655 -5.0070 -1.2797 45 1 3.7907 -4.6476 -2.4756 46 1 5.8619 -6.7595 -2.8614 47 1 5.2275 -6.3352 -4.4863 48 1 7.8948 -7.0209 -4.0148 49 1 7.3719 -5.9715 -5.3604 50 1 10.1376 -6.6944 -6.2126 51 1 8.2956 -2.6190 -2.0213 52 1 7.1913 -2.3213 -3.3934 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042081253.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:06 Heat of formation + Delta-G solvation = 60.749635 kcal Electronic energy + Delta-G solvation = -31639.089652 eV Core-core repulsion = 27640.595836 eV Total energy + Delta-G solvation = -3998.493816 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.68614 -41.31410 -39.60876 -37.37477 -36.88535 -34.69522 -33.28810 -32.85214 -31.87661 -30.86581 -30.13100 -28.08891 -27.78285 -26.54956 -25.65030 -23.61729 -23.48544 -22.33158 -21.80691 -21.36220 -20.92429 -20.20666 -18.70299 -18.26669 -17.71948 -17.27815 -16.93291 -16.67935 -16.28714 -15.95171 -15.68774 -15.60655 -15.27940 -14.88857 -14.66401 -14.53015 -14.38806 -14.11603 -13.97941 -13.84930 -13.82193 -13.48407 -13.17588 -13.09956 -13.07344 -12.83342 -12.75376 -12.62406 -12.19758 -12.16581 -12.03447 -11.92946 -11.86728 -11.77559 -11.58954 -11.55251 -11.31560 -11.04662 -10.91718 -10.73351 -10.14562 -10.02137 -9.66389 -8.92150 -7.87017 -5.22129 0.51938 1.23722 1.42445 1.45881 1.50530 1.52654 1.97796 2.32964 2.48848 3.23892 3.30684 3.49252 3.66996 3.80670 3.87366 3.93418 3.96340 4.01503 4.06872 4.16142 4.26692 4.31324 4.34897 4.47242 4.52823 4.60414 4.61401 4.68510 4.74229 4.76982 4.81472 4.82530 4.83903 4.91496 4.94258 4.99316 5.04742 5.07872 5.13950 5.19078 5.25625 5.32285 5.37536 5.44698 5.45026 5.49547 5.62123 5.64960 5.76958 5.99047 6.17876 6.35018 6.87576 7.07170 7.13032 7.74950 8.42503 9.23897 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017251 B = 0.002692 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.708348 B =10399.504405 C =11324.084718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 C -0.147 4.147 4 C 0.114 3.886 5 N -0.271 5.271 6 C 0.009 3.991 7 C -0.206 4.206 8 C -0.041 4.041 9 C 0.588 3.412 10 O -0.584 6.584 11 N -0.593 5.593 12 C 0.095 3.905 13 C -0.108 4.108 14 C -0.095 4.095 15 H 0.076 0.924 16 C -0.121 4.121 17 C 0.181 3.819 18 N -0.613 5.613 19 C -0.240 4.240 20 H 0.074 0.926 21 C -0.062 4.062 22 N -0.948 5.948 23 Si 0.973 3.027 24 H -0.282 1.282 25 H -0.289 1.289 26 H -0.277 1.277 27 C 0.150 3.850 28 H 0.005 0.995 29 C 0.129 3.871 30 N -0.258 5.258 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.028 0.972 38 H 0.109 0.891 39 H 0.140 0.860 40 H 0.228 0.772 41 H 0.156 0.844 42 H 0.133 0.867 43 H 0.071 0.929 44 H 0.060 0.940 45 H 0.112 0.888 46 H 0.069 0.931 47 H 0.088 0.912 48 H 0.000 1.000 49 H 0.025 0.975 50 H 0.248 0.752 51 H 0.059 0.941 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.671 13.275 16.650 34.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.127 4.127 3 C -0.205 4.205 4 C -0.004 4.004 5 N -0.059 5.059 6 C -0.134 4.134 7 C -0.234 4.234 8 C -0.198 4.198 9 C 0.376 3.624 10 O -0.463 6.463 11 N -0.325 5.325 12 C -0.027 4.027 13 C -0.146 4.146 14 C -0.115 4.115 15 H 0.094 0.906 16 C -0.159 4.159 17 C 0.057 3.943 18 N -0.338 5.338 19 C -0.369 4.369 20 H 0.092 0.908 21 C -0.255 4.255 22 N -0.597 5.597 23 Si 0.801 3.199 24 H -0.208 1.208 25 H -0.215 1.215 26 H -0.203 1.203 27 C 0.042 3.958 28 H 0.023 0.977 29 C 0.005 3.995 30 N -0.096 5.096 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.048 0.952 38 H 0.127 0.873 39 H 0.158 0.842 40 H 0.244 0.756 41 H 0.173 0.827 42 H 0.150 0.850 43 H 0.089 0.911 44 H 0.079 0.921 45 H 0.130 0.870 46 H 0.088 0.912 47 H 0.107 0.893 48 H 0.019 0.981 49 H 0.043 0.957 50 H 0.057 0.943 51 H 0.078 0.922 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -26.802 12.988 15.856 33.741 hybrid contribution 2.584 0.169 -0.212 2.598 sum -24.218 13.157 15.643 31.691 Atomic orbital electron populations 1.21741 0.91897 1.03027 1.03142 1.21394 0.97759 0.96176 0.97332 1.21834 0.99667 0.96005 1.02949 1.22648 0.71196 1.04593 1.01970 1.46137 1.09038 1.38955 1.11722 1.23402 0.88164 1.03795 0.98052 1.21937 0.99706 1.05940 0.95824 1.21582 0.90508 1.09417 0.98331 1.17642 0.87064 0.77675 0.79992 1.90741 1.21731 1.60640 1.73185 1.48162 1.10081 1.52617 1.21633 1.22528 0.80183 0.95130 1.04839 1.21803 1.00343 0.95427 0.97020 1.22198 0.94241 0.96964 0.98113 0.90607 1.22593 0.96318 0.96026 1.00921 1.21360 0.89095 0.88385 0.95480 1.44449 1.12083 1.33234 1.44057 1.19288 0.89751 1.10852 1.16969 0.90816 1.25570 1.02312 0.98345 0.99240 1.70138 1.37595 1.22916 1.29072 0.85233 0.79799 0.77503 0.77333 1.20811 1.21458 1.20276 1.21098 0.91371 0.91670 0.91675 0.97727 1.21348 0.90313 0.96046 0.91757 1.73288 1.04277 1.17462 1.14579 0.90711 0.92259 0.91445 0.91483 0.92528 0.90594 0.95245 0.87279 0.84237 0.75588 0.82656 0.85025 0.91118 0.92123 0.87016 0.91244 0.89334 0.98147 0.95706 0.94277 0.92232 0.91459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.52 9.19 71.98 0.66 0.14 16 2 C -0.11 -0.83 2.95 -10.79 -0.03 -0.86 16 3 C -0.15 -1.43 9.08 71.98 0.65 -0.77 16 4 C 0.11 0.63 5.79 86.38 0.50 1.13 16 5 N -0.27 -3.86 2.86 -347.95 -1.00 -4.86 16 6 C 0.01 0.12 11.40 83.54 0.95 1.07 16 7 C -0.21 -4.75 10.82 22.41 0.24 -4.51 16 8 C -0.04 -1.19 6.77 42.46 0.29 -0.91 16 9 C 0.59 22.31 7.66 86.75 0.66 22.98 16 10 O -0.58 -26.82 16.31 -3.94 -0.06 -26.88 16 11 N -0.59 -21.44 3.01 -822.39 -2.48 -23.91 16 12 C 0.10 2.60 5.87 86.66 0.51 3.10 16 13 C -0.11 -2.85 5.73 30.56 0.18 -2.67 16 14 C -0.10 -3.37 2.62 -10.07 -0.03 -3.40 16 15 H 0.08 2.72 8.13 -2.39 -0.02 2.70 16 16 C -0.12 -4.47 6.54 31.62 0.21 -4.26 16 17 C 0.18 9.32 5.45 86.85 0.47 9.80 16 18 N -0.61 -33.57 3.35 -669.29 -2.24 -35.81 16 19 C -0.24 -14.34 9.88 84.04 0.83 -13.51 16 20 H 0.07 4.36 7.41 -2.91 -0.02 4.34 16 21 C -0.06 -3.69 5.49 84.87 0.47 -3.22 16 22 N -0.95 -59.10 10.44 21.65 0.23 -58.87 16 23 Si 0.97 48.58 29.55 68.60 2.03 50.60 16 24 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 25 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 26 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 27 C 0.15 6.77 2.75 45.60 0.13 6.89 16 28 H 0.01 0.26 7.94 -2.39 -0.02 0.24 16 29 C 0.13 5.57 5.70 85.73 0.49 6.06 16 30 N -0.26 -5.76 8.05 -48.17 -0.39 -6.15 16 31 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 32 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.07 0.19 8.14 -2.39 -0.02 0.17 16 34 H 0.07 0.86 7.95 -2.39 -0.02 0.84 16 35 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 36 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.03 0.44 7.75 -2.39 -0.02 0.43 16 38 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.14 -0.20 8.04 -2.39 -0.02 -0.22 16 40 H 0.23 0.69 8.06 -2.91 -0.02 0.67 16 41 H 0.16 3.60 8.06 -2.91 -0.02 3.57 16 42 H 0.13 3.25 4.32 -15.05 -0.07 3.19 16 43 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 44 H 0.06 1.70 7.99 -2.39 -0.02 1.68 16 45 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 46 H 0.07 2.40 8.12 -2.39 -0.02 2.38 16 47 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 48 H 0.00 0.02 7.77 -2.39 -0.02 0.00 16 49 H 0.02 1.40 7.20 -2.39 -0.02 1.38 16 50 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 51 H 0.06 2.94 6.74 -2.39 -0.02 2.92 16 52 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 Total: -1.00 -82.45 403.80 4.10 -78.34 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: 0.84 Total: 10.47 kcal Atomic # 6 Polarization: 9.88 SS G_CDS: 7.18 Total: 17.06 kcal Atomic # 7 Polarization: -123.72 SS G_CDS: -5.87 Total: -129.60 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -0.06 Total: -26.88 kcal Atomic # 14 Polarization: 48.58 SS G_CDS: 2.03 Total: 50.60 kcal Total: -82.45 4.10 -78.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042081253.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.093 kcal (2) G-P(sol) polarization free energy of solvation -82.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds