Wall clock time and date at job start Wed Apr 1 2020 04:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46821 * 119.99848 * 2 1 3 5 5 N 1.46500 * 109.47251 * 175.00235 * 4 2 1 6 6 C 1.35036 * 124.88742 * 124.99718 * 5 4 2 7 7 C 1.35370 * 107.22646 * 179.71647 * 6 5 4 8 8 C 1.41499 * 105.50452 * 0.26414 * 7 6 5 9 9 C 1.47705 * 126.51764 * 179.97438 * 8 7 6 10 10 O 1.21572 * 120.00324 * 6.74902 * 9 8 7 11 11 N 1.34777 * 120.00007 * 186.74862 * 9 8 7 12 12 C 1.47150 * 121.21391 * 6.53912 * 11 9 8 13 13 C 1.53343 * 107.71247 * 122.68910 * 12 11 9 14 14 C 1.53087 * 110.49815 * 57.57610 * 13 12 11 15 15 H 1.08996 * 113.06597 * 70.86266 * 14 13 12 16 16 C 1.56030 * 106.39577 * 195.29214 * 14 13 12 17 17 C 1.54498 * 102.61424 * 78.37774 * 16 14 13 18 18 N 1.47428 * 107.14955 * 22.84588 * 17 16 14 19 19 C 1.36939 * 126.06553 * 181.58666 * 18 17 16 20 20 H 1.07990 * 120.00504 * 180.02562 * 19 18 17 21 21 C 1.38820 * 119.99250 * 0.04964 * 19 18 17 22 22 N 1.31615 * 120.00043 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99534 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47024 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47095 * 119.99586 * 23 21 19 26 26 H 1.48502 * 109.46785 * 239.99401 * 23 21 19 27 27 C 1.46468 * 107.88230 * 1.62509 * 18 17 16 28 28 H 1.08998 * 108.42166 * 89.23073 * 27 18 17 29 29 C 1.46764 * 121.21237 * 186.81975 * 11 9 8 30 30 N 1.28474 * 124.88372 * 305.19082 * 5 4 2 31 31 H 1.09001 * 109.47328 * 299.99951 * 1 2 3 32 32 H 1.08996 * 109.47292 * 60.00223 * 1 2 3 33 33 H 1.09004 * 109.47243 * 180.02562 * 1 2 3 34 34 H 1.08992 * 109.47218 * 239.99443 * 2 1 3 35 35 H 1.09001 * 109.46958 * 59.99822 * 3 2 1 36 36 H 1.08995 * 109.47428 * 179.97438 * 3 2 1 37 37 H 1.08996 * 109.46834 * 300.00058 * 3 2 1 38 38 H 1.09000 * 109.47407 * 54.99909 * 4 2 1 39 39 H 1.09006 * 109.47468 * 295.00058 * 4 2 1 40 40 H 1.07995 * 126.38199 * 359.97438 * 6 5 4 41 41 H 1.08002 * 127.24395 * 180.24584 * 7 6 5 42 42 H 1.08998 * 109.76385 * 242.33360 * 12 11 9 43 43 H 1.08996 * 109.75788 * 3.10105 * 12 11 9 44 44 H 1.08993 * 109.39411 * 297.24842 * 13 12 11 45 45 H 1.09004 * 109.15969 * 177.74766 * 13 12 11 46 46 H 1.09007 * 110.77709 * 320.09541 * 16 14 13 47 47 H 1.09000 * 110.78030 * 196.66270 * 16 14 13 48 48 H 1.09000 * 109.90298 * 263.46320 * 17 16 14 49 49 H 1.09002 * 109.90437 * 142.22759 * 17 16 14 50 50 H 0.97006 * 119.99573 * 179.97438 * 22 21 19 51 51 H 1.08994 * 109.22651 * 352.83639 * 29 11 9 52 52 H 1.08999 * 109.22303 * 112.23558 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.3449 -0.3873 2.1482 7 6 5.6023 -0.6689 1.7331 8 6 5.4533 -1.2941 0.4724 9 6 6.5397 -1.7928 -0.3952 10 8 7.6868 -1.7949 0.0074 11 7 6.2593 -2.2454 -1.6334 12 6 4.9073 -2.1244 -2.2015 13 6 5.0208 -1.3373 -3.5126 14 6 5.9828 -2.0369 -4.4762 15 1 5.5803 -2.9647 -4.8828 16 6 6.3354 -0.9935 -5.5814 17 6 7.3792 -0.0972 -4.8786 18 7 7.9694 -0.8920 -3.7861 19 6 8.9162 -0.4605 -2.8957 20 1 9.2821 -1.1287 -2.1304 21 6 9.4051 0.8362 -2.9768 22 7 8.9591 1.6506 -3.9096 23 14 10.6961 1.4252 -1.7619 24 1 11.0269 0.3262 -0.8195 25 1 11.9200 1.8315 -2.4982 26 1 10.1673 2.5862 -1.0018 27 6 7.3643 -2.2253 -3.8222 28 1 7.9618 -2.8570 -4.4796 29 6 7.2898 -2.8823 -2.4618 30 7 4.1608 -1.3464 0.2194 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 3.1299 1.4425 0.0005 37 1 1.6766 1.9562 -0.8900 38 1 1.6053 -1.7198 1.2952 39 1 1.7515 -0.1583 2.1371 40 1 4.0688 0.0945 3.0744 41 1 6.5249 -0.4600 2.2543 42 1 4.5000 -3.1162 -2.3980 43 1 4.2609 -1.5914 -1.5042 44 1 5.3900 -0.3338 -3.3014 45 1 4.0360 -1.2682 -3.9748 46 1 5.4551 -0.4150 -5.8620 47 1 6.7705 -1.4843 -6.4520 48 1 6.8931 0.7895 -4.4717 49 1 8.1551 0.1941 -5.5866 50 1 9.3006 2.5568 -3.9660 51 1 8.2560 -2.7912 -1.9658 52 1 7.0484 -3.9379 -2.5863 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042081254.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:11 Heat of formation + Delta-G solvation = 83.303464 kcal Electronic energy + Delta-G solvation = -32939.866401 eV Core-core repulsion = 28942.350592 eV Total energy + Delta-G solvation = -3997.515809 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.59668 -39.61180 -37.80510 -36.69061 -34.82192 -32.69306 -32.24900 -31.06173 -30.60876 -29.05527 -28.21800 -27.49963 -26.90473 -24.58897 -24.12876 -22.40927 -22.28654 -21.31244 -20.42131 -19.87523 -19.44070 -18.27188 -17.24681 -16.47058 -16.40090 -16.27356 -15.27870 -15.14418 -14.72563 -14.53747 -14.15687 -13.91154 -13.81057 -13.63741 -13.59490 -13.22309 -12.97847 -12.82306 -12.74562 -12.60466 -12.44911 -12.27173 -11.85416 -11.57112 -11.46381 -11.34581 -11.30079 -11.22155 -11.06655 -10.75987 -10.71278 -10.63832 -10.31267 -9.93847 -9.73624 -9.66637 -9.53571 -9.36041 -9.27276 -9.03320 -8.88363 -8.41549 -7.91142 -6.64092 -5.52206 -2.83289 1.82406 2.34482 2.44524 3.55442 3.57665 3.61625 3.69496 3.97372 4.13415 4.40845 4.61090 4.67969 4.70105 4.83487 4.90484 5.06660 5.17178 5.24985 5.31268 5.38935 5.40578 5.50448 5.51793 5.57647 5.67450 5.74699 5.76116 5.80271 5.86640 5.88973 5.94898 5.95431 6.01180 6.05085 6.14407 6.22108 6.29378 6.40734 6.42296 6.55500 6.60569 6.67070 6.74116 6.86139 6.91686 7.10911 7.32205 7.73112 7.76269 7.96323 8.04171 8.15396 8.42200 8.84275 9.41954 10.02750 10.66952 11.60539 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010607 B = 0.004234 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.151091 B = 6611.656533 C = 7419.075146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.111 4.111 3 C -0.150 4.150 4 C 0.126 3.874 5 N -0.287 5.287 6 C -0.021 4.021 7 C -0.179 4.179 8 C 0.003 3.997 9 C 0.603 3.397 10 O -0.526 6.526 11 N -0.581 5.581 12 C 0.090 3.910 13 C -0.119 4.119 14 C -0.103 4.103 15 H 0.074 0.926 16 C -0.144 4.144 17 C 0.179 3.821 18 N -0.588 5.588 19 C -0.206 4.206 20 H 0.084 0.916 21 C -0.010 4.010 22 N -0.928 5.928 23 Si 0.903 3.097 24 H -0.276 1.276 25 H -0.295 1.295 26 H -0.294 1.294 27 C 0.155 3.845 28 H 0.025 0.975 29 C 0.114 3.886 30 N -0.261 5.261 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.090 0.910 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.177 0.823 41 H 0.160 0.840 42 H 0.055 0.945 43 H 0.122 0.878 44 H 0.077 0.923 45 H 0.056 0.944 46 H 0.057 0.943 47 H 0.053 0.947 48 H 0.044 0.956 49 H 0.040 0.960 50 H 0.247 0.753 51 H 0.095 0.905 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.145 -5.754 8.314 22.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.130 4.130 3 C -0.207 4.207 4 C 0.005 3.995 5 N -0.074 5.074 6 C -0.164 4.164 7 C -0.207 4.207 8 C -0.157 4.157 9 C 0.389 3.611 10 O -0.400 6.400 11 N -0.313 5.313 12 C -0.034 4.034 13 C -0.157 4.157 14 C -0.122 4.122 15 H 0.092 0.908 16 C -0.183 4.183 17 C 0.055 3.945 18 N -0.313 5.313 19 C -0.335 4.335 20 H 0.102 0.898 21 C -0.205 4.205 22 N -0.577 5.577 23 Si 0.735 3.265 24 H -0.201 1.201 25 H -0.222 1.222 26 H -0.221 1.221 27 C 0.046 3.954 28 H 0.043 0.957 29 C -0.009 4.009 30 N -0.096 5.096 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.108 0.892 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.109 0.891 39 H 0.118 0.882 40 H 0.194 0.806 41 H 0.177 0.823 42 H 0.073 0.927 43 H 0.139 0.861 44 H 0.096 0.904 45 H 0.075 0.925 46 H 0.075 0.925 47 H 0.071 0.929 48 H 0.062 0.938 49 H 0.058 0.942 50 H 0.057 0.943 51 H 0.113 0.887 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.268 -5.900 7.824 22.513 hybrid contribution 1.152 0.868 1.098 1.813 sum -19.116 -5.032 8.923 21.687 Atomic orbital electron populations 1.21779 0.93743 1.02187 1.02526 1.21448 0.96337 0.97192 0.98001 1.21846 1.01820 0.94974 1.02066 1.22110 0.74101 1.02684 1.00591 1.45667 1.07382 1.41529 1.12845 1.22768 0.89947 1.06329 0.97366 1.21775 0.97891 1.04648 0.96372 1.22133 0.90335 1.06119 0.97076 1.16824 0.86179 0.77371 0.80765 1.90784 1.19925 1.55357 1.73969 1.47565 1.11172 1.58709 1.13844 1.22453 0.84099 1.00231 0.96621 1.21885 0.98114 1.00969 0.94708 1.22401 0.96094 0.97492 0.96259 0.90812 1.23171 0.99794 0.98071 0.97225 1.21196 0.92327 0.91854 0.89138 1.44307 1.45197 1.07493 1.34324 1.19146 1.11756 0.95869 1.06681 0.89818 1.24684 1.00493 0.96482 0.98869 1.69979 1.46379 1.06372 1.35009 0.86114 0.81075 0.78622 0.80693 1.20100 1.22199 1.22138 1.20689 0.92030 0.89620 0.93050 0.95735 1.21409 0.93018 0.93956 0.92546 1.73283 1.05518 1.18280 1.12540 0.92441 0.91710 0.92253 0.89183 0.92699 0.92325 0.91967 0.89113 0.88223 0.80592 0.82256 0.92663 0.86112 0.90431 0.92546 0.92454 0.92851 0.93828 0.94188 0.94287 0.88677 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 9.19 37.16 0.34 -0.44 16 2 C -0.11 -0.85 2.95 -90.62 -0.27 -1.12 16 3 C -0.15 -1.35 9.08 37.16 0.34 -1.01 16 4 C 0.13 0.91 5.79 -4.04 -0.02 0.88 16 5 N -0.29 -3.28 2.86 -61.33 -0.18 -3.46 16 6 C -0.02 -0.24 11.40 -17.16 -0.20 -0.44 16 7 C -0.18 -2.75 10.81 -39.36 -0.43 -3.17 16 8 C 0.00 0.06 6.86 -82.77 -0.57 -0.51 16 9 C 0.60 12.82 7.71 -12.39 -0.10 12.72 16 10 O -0.53 -12.98 16.40 5.30 0.09 -12.90 16 11 N -0.58 -11.38 2.96 -174.95 -0.52 -11.90 16 12 C 0.09 1.46 6.23 -3.51 -0.02 1.44 16 13 C -0.12 -2.04 5.06 -26.51 -0.13 -2.17 16 14 C -0.10 -1.82 3.68 -88.43 -0.33 -2.14 16 15 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 16 C -0.14 -2.75 6.33 -24.32 -0.15 -2.91 16 17 C 0.18 4.46 4.61 -2.75 -0.01 4.45 16 18 N -0.59 -15.22 3.20 -164.42 -0.53 -15.75 16 19 C -0.21 -6.00 9.70 -15.06 -0.15 -6.15 16 20 H 0.08 2.50 6.51 -52.49 -0.34 2.16 16 21 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 22 N -0.93 -28.51 10.38 55.49 0.58 -27.93 16 23 Si 0.90 24.22 29.55 -169.99 -5.02 19.19 16 24 H -0.28 -7.40 7.11 56.52 0.40 -7.00 16 25 H -0.29 -7.82 7.11 56.52 0.40 -7.41 16 26 H -0.29 -7.94 7.11 56.52 0.40 -7.54 16 27 C 0.15 3.26 2.97 -68.30 -0.20 3.05 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 C 0.11 2.28 5.69 -4.78 -0.03 2.25 16 30 N -0.26 -3.86 8.06 33.42 0.27 -3.59 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.09 0.87 7.95 -51.93 -0.41 0.45 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.71 7.75 -51.93 -0.40 0.31 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.10 0.46 8.04 -51.93 -0.42 0.05 16 40 H 0.18 1.27 8.06 -52.49 -0.42 0.84 16 41 H 0.16 2.40 8.06 -52.49 -0.42 1.97 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.12 1.93 4.11 -72.49 -0.30 1.63 16 44 H 0.08 1.66 6.85 -51.93 -0.36 1.30 16 45 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 46 H 0.06 1.00 7.97 -51.93 -0.41 0.58 16 47 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.04 1.21 7.04 -51.93 -0.37 0.85 16 49 H 0.04 1.11 7.57 -51.93 -0.39 0.71 16 50 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 51 H 0.09 2.18 5.53 -51.93 -0.29 1.90 16 52 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 399.73 15.07 6.02 6.02 Total: -1.00 -35.56 399.73 -10.04 -45.61 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -8.74 Total: 0.36 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: -2.02 Total: 4.34 kcal Atomic # 7 Polarization: -62.26 SS G_CDS: -0.37 Total: -62.63 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.09 Total: -12.90 kcal Atomic # 14 Polarization: 24.22 SS G_CDS: -5.02 Total: 19.19 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.56 -10.04 -45.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042081254.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.912 kcal (2) G-P(sol) polarization free energy of solvation -35.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds