Wall clock time and date at job start Wed Apr 1 2020 04:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46821 * 119.99848 * 2 1 3 5 5 N 1.46500 * 109.47251 * 175.00235 * 4 2 1 6 6 C 1.35036 * 124.88742 * 124.99718 * 5 4 2 7 7 C 1.35370 * 107.22646 * 179.71647 * 6 5 4 8 8 C 1.41499 * 105.50452 * 0.26414 * 7 6 5 9 9 C 1.47705 * 126.51764 * 179.97438 * 8 7 6 10 10 O 1.21572 * 120.00324 * 6.74902 * 9 8 7 11 11 N 1.34777 * 120.00007 * 186.74862 * 9 8 7 12 12 C 1.47150 * 121.21391 * 6.53912 * 11 9 8 13 13 C 1.53343 * 107.71247 * 122.68910 * 12 11 9 14 14 C 1.53087 * 110.49815 * 57.57610 * 13 12 11 15 15 H 1.08996 * 113.06597 * 70.86266 * 14 13 12 16 16 C 1.56030 * 106.39577 * 195.29214 * 14 13 12 17 17 C 1.54498 * 102.61424 * 78.37774 * 16 14 13 18 18 N 1.47428 * 107.14955 * 22.84588 * 17 16 14 19 19 C 1.36939 * 126.06553 * 181.58666 * 18 17 16 20 20 H 1.07990 * 120.00504 * 180.02562 * 19 18 17 21 21 C 1.38820 * 119.99250 * 0.04964 * 19 18 17 22 22 N 1.31615 * 120.00043 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99534 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47024 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47095 * 119.99586 * 23 21 19 26 26 H 1.48502 * 109.46785 * 239.99401 * 23 21 19 27 27 C 1.46468 * 107.88230 * 1.62509 * 18 17 16 28 28 H 1.08998 * 108.42166 * 89.23073 * 27 18 17 29 29 C 1.46764 * 121.21237 * 186.81975 * 11 9 8 30 30 N 1.28474 * 124.88372 * 305.19082 * 5 4 2 31 31 H 1.09001 * 109.47328 * 299.99951 * 1 2 3 32 32 H 1.08996 * 109.47292 * 60.00223 * 1 2 3 33 33 H 1.09004 * 109.47243 * 180.02562 * 1 2 3 34 34 H 1.08992 * 109.47218 * 239.99443 * 2 1 3 35 35 H 1.09001 * 109.46958 * 59.99822 * 3 2 1 36 36 H 1.08995 * 109.47428 * 179.97438 * 3 2 1 37 37 H 1.08996 * 109.46834 * 300.00058 * 3 2 1 38 38 H 1.09000 * 109.47407 * 54.99909 * 4 2 1 39 39 H 1.09006 * 109.47468 * 295.00058 * 4 2 1 40 40 H 1.07995 * 126.38199 * 359.97438 * 6 5 4 41 41 H 1.08002 * 127.24395 * 180.24584 * 7 6 5 42 42 H 1.08998 * 109.76385 * 242.33360 * 12 11 9 43 43 H 1.08996 * 109.75788 * 3.10105 * 12 11 9 44 44 H 1.08993 * 109.39411 * 297.24842 * 13 12 11 45 45 H 1.09004 * 109.15969 * 177.74766 * 13 12 11 46 46 H 1.09007 * 110.77709 * 320.09541 * 16 14 13 47 47 H 1.09000 * 110.78030 * 196.66270 * 16 14 13 48 48 H 1.09000 * 109.90298 * 263.46320 * 17 16 14 49 49 H 1.09002 * 109.90437 * 142.22759 * 17 16 14 50 50 H 0.97006 * 119.99573 * 179.97438 * 22 21 19 51 51 H 1.08994 * 109.22651 * 352.83639 * 29 11 9 52 52 H 1.08999 * 109.22303 * 112.23558 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.3449 -0.3873 2.1482 7 6 5.6023 -0.6689 1.7331 8 6 5.4533 -1.2941 0.4724 9 6 6.5397 -1.7928 -0.3952 10 8 7.6868 -1.7949 0.0074 11 7 6.2593 -2.2454 -1.6334 12 6 4.9073 -2.1244 -2.2015 13 6 5.0208 -1.3373 -3.5126 14 6 5.9828 -2.0369 -4.4762 15 1 5.5803 -2.9647 -4.8828 16 6 6.3354 -0.9935 -5.5814 17 6 7.3792 -0.0972 -4.8786 18 7 7.9694 -0.8920 -3.7861 19 6 8.9162 -0.4605 -2.8957 20 1 9.2821 -1.1287 -2.1304 21 6 9.4051 0.8362 -2.9768 22 7 8.9591 1.6506 -3.9096 23 14 10.6961 1.4252 -1.7619 24 1 11.0269 0.3262 -0.8195 25 1 11.9200 1.8315 -2.4982 26 1 10.1673 2.5862 -1.0018 27 6 7.3643 -2.2253 -3.8222 28 1 7.9618 -2.8570 -4.4796 29 6 7.2898 -2.8823 -2.4618 30 7 4.1608 -1.3464 0.2194 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 3.1299 1.4425 0.0005 37 1 1.6766 1.9562 -0.8900 38 1 1.6053 -1.7198 1.2952 39 1 1.7515 -0.1583 2.1371 40 1 4.0688 0.0945 3.0744 41 1 6.5249 -0.4600 2.2543 42 1 4.5000 -3.1162 -2.3980 43 1 4.2609 -1.5914 -1.5042 44 1 5.3900 -0.3338 -3.3014 45 1 4.0360 -1.2682 -3.9748 46 1 5.4551 -0.4150 -5.8620 47 1 6.7705 -1.4843 -6.4520 48 1 6.8931 0.7895 -4.4717 49 1 8.1551 0.1941 -5.5866 50 1 9.3006 2.5568 -3.9660 51 1 8.2560 -2.7912 -1.9658 52 1 7.0484 -3.9379 -2.5863 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042081254.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:10 Heat of formation + Delta-G solvation = 60.676012 kcal Electronic energy + Delta-G solvation = -32940.847601 eV Core-core repulsion = 28942.350592 eV Total energy + Delta-G solvation = -3998.497009 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.65316 -41.19607 -39.45294 -37.38044 -36.53177 -34.65965 -33.30930 -32.71053 -31.81357 -30.66915 -30.03250 -28.11872 -27.81125 -26.49884 -25.71699 -23.92672 -23.57313 -22.33659 -21.73057 -21.30363 -20.70255 -19.78913 -18.48905 -18.34882 -17.72726 -17.21648 -16.98172 -16.52829 -16.15296 -15.97258 -15.74885 -15.53155 -15.25941 -14.75194 -14.61152 -14.40295 -14.30886 -14.13972 -14.04378 -13.89458 -13.69629 -13.19387 -13.10836 -13.10498 -12.96041 -12.84122 -12.66916 -12.63424 -12.36464 -12.17167 -12.04040 -11.94381 -11.84229 -11.66956 -11.58294 -11.37856 -11.25181 -11.15592 -10.71243 -10.65433 -10.14114 -9.99018 -9.43969 -8.79477 -7.83025 -5.12604 0.60227 1.23770 1.34351 1.36374 1.49630 1.56647 2.15863 2.48914 2.51413 3.28818 3.35804 3.53917 3.73722 3.85336 3.89054 3.93834 4.00925 4.04772 4.13168 4.15443 4.34325 4.42667 4.49139 4.52626 4.58604 4.61204 4.65190 4.68349 4.72745 4.77718 4.79734 4.80705 4.89124 4.93064 4.99068 5.03332 5.04626 5.13916 5.15636 5.24245 5.28665 5.34094 5.41238 5.43883 5.55255 5.64413 5.71657 5.76572 5.81617 6.03759 6.24119 6.53907 6.94452 7.16450 7.30558 7.84210 8.47072 9.28200 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010607 B = 0.004234 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.151091 B = 6611.656533 C = 7419.075146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.107 4.107 3 C -0.149 4.149 4 C 0.115 3.885 5 N -0.273 5.273 6 C 0.008 3.992 7 C -0.215 4.215 8 C -0.039 4.039 9 C 0.589 3.411 10 O -0.582 6.582 11 N -0.584 5.584 12 C 0.090 3.910 13 C -0.112 4.112 14 C -0.086 4.086 15 H 0.124 0.876 16 C -0.129 4.129 17 C 0.187 3.813 18 N -0.606 5.606 19 C -0.199 4.199 20 H 0.068 0.932 21 C -0.067 4.067 22 N -0.952 5.952 23 Si 0.955 3.045 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.296 1.296 27 C 0.142 3.858 28 H 0.032 0.968 29 C 0.115 3.885 30 N -0.257 5.257 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.020 0.980 37 H 0.056 0.944 38 H 0.112 0.888 39 H 0.138 0.862 40 H 0.227 0.773 41 H 0.148 0.852 42 H 0.091 0.909 43 H 0.126 0.874 44 H 0.025 0.975 45 H 0.095 0.905 46 H 0.079 0.921 47 H 0.071 0.929 48 H 0.003 0.997 49 H 0.000 1.000 50 H 0.241 0.759 51 H 0.054 0.946 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.669 -7.307 9.045 27.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.126 4.126 3 C -0.206 4.206 4 C -0.003 4.003 5 N -0.060 5.060 6 C -0.135 4.135 7 C -0.243 4.243 8 C -0.196 4.196 9 C 0.377 3.623 10 O -0.461 6.461 11 N -0.315 5.315 12 C -0.032 4.032 13 C -0.151 4.151 14 C -0.105 4.105 15 H 0.142 0.858 16 C -0.167 4.167 17 C 0.063 3.937 18 N -0.330 5.330 19 C -0.328 4.328 20 H 0.086 0.914 21 C -0.259 4.259 22 N -0.603 5.603 23 Si 0.785 3.215 24 H -0.206 1.206 25 H -0.213 1.213 26 H -0.224 1.224 27 C 0.035 3.965 28 H 0.049 0.951 29 C -0.008 4.008 30 N -0.094 5.094 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.039 0.961 37 H 0.075 0.925 38 H 0.130 0.870 39 H 0.156 0.844 40 H 0.244 0.756 41 H 0.166 0.834 42 H 0.109 0.891 43 H 0.143 0.857 44 H 0.044 0.956 45 H 0.114 0.886 46 H 0.098 0.902 47 H 0.090 0.910 48 H 0.021 0.979 49 H 0.018 0.982 50 H 0.051 0.949 51 H 0.073 0.927 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -24.842 -7.494 8.521 27.312 hybrid contribution 2.436 1.339 0.909 2.924 sum -22.407 -6.156 9.430 25.078 Atomic orbital electron populations 1.21730 0.91451 1.03178 1.03196 1.21396 0.98063 0.95747 0.97371 1.21842 0.99293 0.96501 1.02965 1.22648 0.71124 1.04619 1.01922 1.46157 1.09039 1.39164 1.11672 1.23336 0.88143 1.03899 0.98141 1.21922 0.99620 1.06480 0.96312 1.21786 0.90803 1.09077 0.97958 1.17452 0.86515 0.76809 0.81557 1.90726 1.22289 1.57769 1.75266 1.47757 1.12281 1.57985 1.13434 1.22677 0.82478 1.02059 0.96010 1.21824 0.99664 0.98152 0.95415 1.22462 0.93918 0.98992 0.95115 0.85820 1.23035 0.98591 0.97543 0.97543 1.20948 0.92431 0.92126 0.88239 1.44501 1.44954 1.09714 1.33875 1.19182 1.11835 0.95525 1.06294 0.91418 1.25312 1.02823 0.97008 1.00720 1.70164 1.47596 1.06191 1.36356 0.85316 0.79517 0.77678 0.78951 1.20590 1.21259 1.22386 1.21018 0.94150 0.87216 0.94119 0.95104 1.21341 0.91838 0.96136 0.91491 1.73125 1.04214 1.18500 1.13585 0.90724 0.92166 0.91096 0.91455 0.90507 0.96054 0.92513 0.86975 0.84368 0.75624 0.83404 0.89126 0.85733 0.95575 0.88621 0.90193 0.91019 0.97911 0.98159 0.94947 0.92746 0.88647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.19 71.98 0.66 -0.27 16 2 C -0.11 -1.31 2.95 -10.80 -0.03 -1.34 16 3 C -0.15 -2.40 9.08 71.98 0.65 -1.75 16 4 C 0.11 1.15 5.79 86.38 0.50 1.65 16 5 N -0.27 -5.52 2.86 -347.94 -1.00 -6.51 16 6 C 0.01 0.17 11.40 83.54 0.95 1.12 16 7 C -0.22 -6.76 10.81 22.41 0.24 -6.51 16 8 C -0.04 -1.42 6.86 42.45 0.29 -1.12 16 9 C 0.59 26.41 7.71 86.75 0.67 27.08 16 10 O -0.58 -31.09 16.40 -3.94 -0.06 -31.16 16 11 N -0.58 -23.16 2.96 -825.70 -2.45 -25.61 16 12 C 0.09 2.77 6.23 86.37 0.54 3.31 16 13 C -0.11 -3.63 5.06 30.74 0.16 -3.48 16 14 C -0.09 -2.78 3.68 -9.37 -0.03 -2.81 16 15 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 16 C -0.13 -4.69 6.33 32.15 0.20 -4.49 16 17 C 0.19 9.71 4.61 86.71 0.40 10.11 16 18 N -0.61 -32.67 3.20 -674.12 -2.15 -34.82 16 19 C -0.20 -12.25 9.70 84.03 0.81 -11.43 16 20 H 0.07 4.34 6.51 -2.92 -0.02 4.33 16 21 C -0.07 -4.21 5.49 84.86 0.47 -3.75 16 22 N -0.95 -61.83 10.38 21.65 0.22 -61.61 16 23 Si 0.95 52.59 29.55 68.60 2.03 54.62 16 24 H -0.28 -15.49 7.11 99.48 0.71 -14.78 16 25 H -0.29 -15.18 7.11 99.48 0.71 -14.47 16 26 H -0.30 -16.28 7.11 99.48 0.71 -15.58 16 27 C 0.14 5.93 2.97 44.77 0.13 6.06 16 28 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 29 C 0.12 4.65 5.69 85.76 0.49 5.14 16 30 N -0.26 -7.34 8.06 -48.18 -0.39 -7.73 16 31 H 0.07 0.28 8.14 -2.39 -0.02 0.27 16 32 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.07 1.15 7.95 -2.39 -0.02 1.13 16 35 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.02 0.49 7.75 -2.39 -0.02 0.47 16 37 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 38 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.14 0.42 8.04 -2.38 -0.02 0.40 16 40 H 0.23 2.15 8.06 -2.91 -0.02 2.13 16 41 H 0.15 4.80 8.06 -2.91 -0.02 4.78 16 42 H 0.09 2.20 8.14 -2.39 -0.02 2.19 16 43 H 0.13 3.82 4.11 -28.98 -0.12 3.71 16 44 H 0.03 1.11 6.85 -2.39 -0.02 1.10 16 45 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 46 H 0.08 2.57 7.97 -2.38 -0.02 2.56 16 47 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 48 H 0.00 0.16 7.04 -2.39 -0.02 0.14 16 49 H 0.00 0.01 7.57 -2.39 -0.02 -0.01 16 50 H 0.24 15.30 8.31 -92.70 -0.77 14.53 16 51 H 0.05 2.64 5.53 -2.39 -0.01 2.63 16 52 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 Total: -1.00 -88.59 399.73 4.10 -84.49 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: 0.79 Total: 10.80 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: 7.10 Total: 17.52 kcal Atomic # 7 Polarization: -130.52 SS G_CDS: -5.76 Total: -136.28 kcal Atomic # 8 Polarization: -31.09 SS G_CDS: -0.06 Total: -31.16 kcal Atomic # 14 Polarization: 52.59 SS G_CDS: 2.03 Total: 54.62 kcal Total: -88.59 4.10 -84.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042081254.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.169 kcal (2) G-P(sol) polarization free energy of solvation -88.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds