Wall clock time and date at job start Wed Apr 1 2020 04:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47114 * 2 1 4 4 C 1.52998 * 109.47246 * 239.99931 * 2 1 3 5 5 N 1.46502 * 109.46916 * 120.00063 * 2 1 3 6 6 C 1.34262 * 125.75626 * 75.00112 * 5 2 1 7 7 C 1.38041 * 107.41705 * 179.97438 * 6 5 2 8 8 C 1.47433 * 126.41296 * 179.97438 * 7 6 5 9 9 O 1.21605 * 119.99965 * 41.79552 * 8 7 6 10 10 N 1.34776 * 119.99838 * 221.80014 * 8 7 6 11 11 C 1.45232 * 119.34077 * 356.41106 * 10 8 7 12 12 C 1.50611 * 112.83509 * 135.99753 * 11 10 8 13 13 C 1.48853 * 117.90753 * 27.68768 * 12 11 10 14 14 H 1.09000 * 106.76374 * 217.69303 * 13 12 11 15 15 C 1.55056 * 111.54817 * 101.50997 * 13 12 11 16 16 C 1.55060 * 101.27519 * 194.53654 * 15 13 12 17 17 N 1.47552 * 104.85196 * 35.96848 * 16 15 13 18 18 C 1.36934 * 125.85570 * 156.09906 * 17 16 15 19 19 H 1.08003 * 119.99882 * 180.02562 * 18 17 16 20 20 C 1.38811 * 120.00513 * 0.02562 * 18 17 16 21 21 N 1.31622 * 119.99510 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00231 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47220 * 60.00118 * 22 20 18 24 24 H 1.48502 * 109.47073 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47446 * 299.99828 * 22 20 18 26 26 C 1.47622 * 108.28231 * 336.11292 * 17 16 15 27 27 H 1.09001 * 108.10408 * 244.72427 * 26 17 16 28 28 C 1.44675 * 119.91247 * 176.80149 * 10 8 7 29 29 C 1.41285 * 107.17332 * 0.24120 * 7 6 5 30 30 N 1.30456 * 108.02023 * 359.59075 * 29 7 6 31 31 H 1.08998 * 109.47440 * 299.99825 * 1 2 3 32 32 H 1.09002 * 109.47093 * 60.00071 * 1 2 3 33 33 H 1.09004 * 109.47549 * 179.97438 * 1 2 3 34 34 H 1.09006 * 109.47148 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.47561 * 299.99749 * 3 2 1 36 36 H 1.09000 * 109.47213 * 60.00149 * 3 2 1 37 37 H 1.08997 * 109.47041 * 300.00191 * 4 2 1 38 38 H 1.09002 * 109.47076 * 59.99988 * 4 2 1 39 39 H 1.08999 * 109.47314 * 180.02562 * 4 2 1 40 40 H 1.08007 * 126.28525 * 0.02562 * 6 5 2 41 41 H 1.09003 * 108.81094 * 15.13232 * 11 10 8 42 42 H 1.08997 * 108.80869 * 256.86265 * 11 10 8 43 43 H 1.09001 * 107.75482 * 265.55021 * 12 11 10 44 44 H 1.09001 * 107.75176 * 149.82264 * 12 11 10 45 45 H 1.09002 * 111.06949 * 76.52157 * 15 13 12 46 46 H 1.09006 * 111.06860 * 312.54544 * 15 13 12 47 47 H 1.08997 * 110.36377 * 154.81663 * 16 15 13 48 48 H 1.09001 * 110.36098 * 277.01654 * 16 15 13 49 49 H 0.96997 * 119.99959 * 180.02562 * 21 20 18 50 50 H 1.09003 * 109.26501 * 108.00168 * 28 10 8 51 51 H 1.09001 * 108.17830 * 349.66130 * 28 10 8 52 52 H 1.07994 * 125.99235 * 179.73463 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0182 -0.6906 1.1962 6 6 2.0139 -2.0189 1.3919 7 6 2.5571 -2.2546 2.6389 8 6 2.7505 -3.5706 3.2747 9 8 3.1613 -4.5084 2.6186 10 7 2.4719 -3.7343 4.5832 11 6 2.0571 -2.5872 5.3714 12 6 0.8925 -2.8905 6.2770 13 6 0.7230 -4.2923 6.7481 14 1 -0.3485 -4.4919 6.7618 15 6 1.2273 -4.4688 8.2037 16 6 1.3046 -6.0136 8.3125 17 7 1.7442 -6.4653 6.9784 18 6 2.3844 -7.6435 6.7011 19 1 2.6650 -7.8796 5.6852 20 6 2.6727 -8.5347 7.7256 21 7 2.3303 -8.2472 8.9635 22 14 3.5467 -10.1416 7.3473 23 1 4.8705 -9.8539 6.7390 24 1 3.7353 -10.9102 8.6039 25 1 2.7285 -10.9387 6.3984 26 6 1.3757 -5.4287 5.9939 27 1 0.6386 -5.8549 5.3133 28 6 2.5960 -5.0421 5.1892 29 6 2.8873 -0.9982 3.1943 30 7 2.5684 -0.0772 2.3272 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 1.6766 -1.7489 -1.2492 38 1 1.6766 -0.2074 -2.1392 39 1 3.1300 -0.7217 -1.2490 40 1 1.6525 -2.7657 0.7004 41 1 1.7757 -1.7796 4.6955 42 1 2.8986 -2.2561 5.9799 43 1 -0.0193 -2.6032 5.7534 44 1 0.9804 -2.2526 7.1564 45 1 0.5123 -4.0609 8.9183 46 1 2.2105 -4.0170 8.3353 47 1 2.0321 -6.3046 9.0702 48 1 0.3243 -6.4266 8.5506 49 1 2.5321 -8.8697 9.6795 50 1 3.4688 -5.0546 5.8421 51 1 2.7412 -5.7731 4.3937 52 1 3.3288 -0.8298 4.1654 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042125682.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:16 Heat of formation + Delta-G solvation = 79.827442 kcal Electronic energy + Delta-G solvation = -31579.900534 eV Core-core repulsion = 27582.233994 eV Total energy + Delta-G solvation = -3997.666540 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.73077 -39.89939 -38.05508 -37.03729 -35.36431 -33.08003 -31.64586 -31.03346 -30.57305 -28.98830 -28.41538 -27.95038 -27.78927 -25.03107 -24.49651 -23.06614 -22.37252 -21.78470 -20.34711 -19.85420 -19.49188 -17.80881 -17.05690 -16.83184 -16.44296 -15.74147 -15.55419 -15.05134 -14.93716 -14.87922 -14.61123 -14.40425 -14.02260 -13.81863 -13.74011 -13.37334 -13.05829 -12.85341 -12.76509 -12.65642 -12.44619 -12.34193 -12.25718 -12.10037 -11.73657 -11.69357 -11.60369 -11.54920 -11.30599 -10.99867 -10.89255 -10.81317 -10.64926 -10.08692 -9.95688 -9.79744 -9.65664 -9.59355 -9.57317 -9.35083 -8.70908 -8.62886 -8.14556 -6.83741 -5.62149 -3.03834 1.53509 2.07270 2.19810 3.18845 3.45728 3.49255 3.50873 3.55268 3.96791 4.23465 4.34095 4.51501 4.55310 4.59932 4.91106 4.95431 4.97146 5.01720 5.11548 5.14763 5.18552 5.20690 5.27666 5.30091 5.35298 5.41973 5.48418 5.54353 5.59396 5.66033 5.67782 5.73953 5.77187 5.90501 6.01869 6.05769 6.17143 6.27657 6.31968 6.36088 6.55863 6.67196 6.68309 6.70945 6.92715 6.98420 7.13063 7.43391 7.54952 7.68299 7.78926 7.88450 8.37519 8.53719 9.24909 9.85097 10.49845 11.41920 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019777 B = 0.002553 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.436542 B =10966.976765 C =11831.447898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.178 3.822 3 C -0.143 4.143 4 C -0.163 4.163 5 N -0.353 5.353 6 C 0.115 3.885 7 C -0.279 4.279 8 C 0.587 3.413 9 O -0.546 6.546 10 N -0.587 5.587 11 C 0.106 3.894 12 C -0.111 4.111 13 C -0.089 4.089 14 H 0.059 0.941 15 C -0.141 4.141 16 C 0.151 3.849 17 N -0.594 5.594 18 C -0.221 4.221 19 H 0.078 0.922 20 C -0.009 4.009 21 N -0.923 5.923 22 Si 0.913 3.087 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.285 1.285 26 C 0.165 3.835 27 H 0.025 0.975 28 C 0.106 3.894 29 C 0.075 3.925 30 N -0.295 5.295 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.180 0.820 41 H 0.087 0.913 42 H 0.059 0.941 43 H 0.054 0.946 44 H 0.071 0.929 45 H 0.057 0.943 46 H 0.059 0.941 47 H 0.105 0.895 48 H 0.013 0.987 49 H 0.252 0.748 50 H 0.068 0.932 51 H 0.084 0.916 52 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.159 21.555 -15.427 26.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.095 3.905 3 C -0.200 4.200 4 C -0.221 4.221 5 N -0.133 5.133 6 C -0.035 4.035 7 C -0.294 4.294 8 C 0.374 3.626 9 O -0.425 6.425 10 N -0.319 5.319 11 C -0.018 4.018 12 C -0.150 4.150 13 C -0.109 4.109 14 H 0.077 0.923 15 C -0.180 4.180 16 C 0.026 3.974 17 N -0.319 5.319 18 C -0.349 4.349 19 H 0.096 0.904 20 C -0.205 4.205 21 N -0.571 5.571 22 Si 0.744 3.256 23 H -0.210 1.210 24 H -0.216 1.216 25 H -0.212 1.212 26 C 0.057 3.943 27 H 0.043 0.957 28 C -0.018 4.018 29 C -0.112 4.112 30 N -0.114 5.114 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.197 0.803 41 H 0.105 0.895 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.090 0.910 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.123 0.877 48 H 0.031 0.969 49 H 0.063 0.937 50 H 0.086 0.914 51 H 0.102 0.898 52 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -3.959 22.160 -15.988 27.611 hybrid contribution 0.292 -1.803 0.137 1.831 sum -3.667 20.358 -15.851 26.060 Atomic orbital electron populations 1.22281 0.92641 1.03392 1.03568 1.20827 0.94574 0.93895 0.81185 1.21910 1.02289 0.92673 1.03176 1.22286 1.02619 1.01229 0.95957 1.48747 1.46342 1.04081 1.14143 1.22709 0.97784 0.86490 0.96494 1.20261 1.17291 0.94514 0.97325 1.17390 0.77363 0.86482 0.81325 1.90766 1.46318 1.42299 1.63077 1.46912 1.66182 1.10113 1.08658 1.21071 0.97367 0.88794 0.94591 1.20397 0.97972 0.97312 0.99291 1.20433 1.00309 0.93189 0.96926 0.92294 1.23209 0.99694 1.00878 0.94216 1.21946 0.99145 0.86766 0.89532 1.44752 1.68047 1.16959 1.02092 1.19038 1.29291 0.92875 0.93742 0.90377 1.24767 1.01384 0.98916 0.95422 1.69805 1.52154 1.36234 0.98906 0.86165 0.79591 0.83102 0.76761 1.21050 1.21644 1.21203 1.19963 0.93408 0.89411 0.91521 0.95716 1.21425 1.00188 0.82381 0.97841 1.24136 0.98621 0.89390 0.99047 1.77108 1.18184 1.21924 0.94216 0.91390 0.90210 0.91605 0.91531 0.90877 0.90849 0.91336 0.89877 0.91275 0.80302 0.89530 0.92322 0.92718 0.91018 0.92410 0.92259 0.87750 0.96946 0.93739 0.91384 0.89759 0.79259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.90 8.72 37.15 0.32 -0.58 16 2 C 0.18 1.22 1.23 -131.82 -0.16 1.06 16 3 C -0.14 -0.89 8.07 37.16 0.30 -0.59 16 4 C -0.16 -0.89 8.28 37.16 0.31 -0.58 16 5 N -0.35 -3.54 3.41 -48.11 -0.16 -3.71 16 6 C 0.12 1.31 10.58 -16.56 -0.18 1.14 16 7 C -0.28 -3.75 5.25 -105.07 -0.55 -4.30 16 8 C 0.59 9.99 7.55 -12.52 -0.09 9.89 16 9 O -0.55 -11.35 16.38 5.27 0.09 -11.26 16 10 N -0.59 -9.77 3.03 -179.92 -0.54 -10.31 16 11 C 0.11 1.37 5.24 -5.92 -0.03 1.34 16 12 C -0.11 -1.49 5.55 -29.96 -0.17 -1.65 16 13 C -0.09 -1.55 2.63 -92.47 -0.24 -1.79 16 14 H 0.06 1.03 8.10 -51.93 -0.42 0.61 16 15 C -0.14 -2.61 6.24 -24.56 -0.15 -2.77 16 16 C 0.15 3.63 5.91 -2.38 -0.01 3.62 16 17 N -0.59 -15.10 3.16 -164.76 -0.52 -15.62 16 18 C -0.22 -6.18 9.77 -15.06 -0.15 -6.32 16 19 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 20 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 21 N -0.92 -26.90 10.12 55.49 0.56 -26.34 16 22 Si 0.91 22.49 29.55 -169.99 -5.02 17.46 16 23 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 C 0.17 3.49 3.29 -69.12 -0.23 3.26 16 27 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 28 C 0.11 2.14 5.46 -5.92 -0.03 2.11 16 29 C 0.07 0.87 9.53 -16.98 -0.16 0.71 16 30 N -0.29 -3.39 11.56 30.86 0.36 -3.04 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.53 8.03 -51.93 -0.42 0.11 16 37 H 0.07 0.37 7.34 -51.93 -0.38 -0.01 16 38 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.18 1.71 7.53 -52.48 -0.40 1.32 16 41 H 0.09 0.97 4.38 -51.93 -0.23 0.74 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.05 0.67 8.13 -51.93 -0.42 0.25 16 44 H 0.07 0.83 7.65 -51.93 -0.40 0.44 16 45 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.10 2.83 5.91 -51.93 -0.31 2.52 16 48 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 50 H 0.07 1.49 8.07 -51.93 -0.42 1.07 16 51 H 0.08 1.89 6.84 -51.93 -0.36 1.53 16 52 H 0.19 1.77 7.04 -52.49 -0.37 1.41 16 LS Contribution 400.17 15.07 6.03 6.03 Total: -1.00 -33.51 400.17 -9.27 -42.78 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -8.73 Total: -0.19 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: -1.32 Total: 4.18 kcal Atomic # 7 Polarization: -58.70 SS G_CDS: -0.31 Total: -59.01 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.09 Total: -11.26 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.51 -9.27 -42.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042125682.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.612 kcal (2) G-P(sol) polarization free energy of solvation -33.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds