Wall clock time and date at job start Wed Apr 1 2020 04:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47125 * 2 1 4 4 C 1.52998 * 109.47358 * 240.00211 * 2 1 3 5 5 N 1.46499 * 109.47292 * 119.99884 * 2 1 3 6 6 C 1.34266 * 125.75089 * 75.27372 * 5 2 1 7 7 C 1.38039 * 107.41487 * 180.18521 * 6 5 2 8 8 C 1.47433 * 126.41462 * 179.87458 * 7 6 5 9 9 O 1.21601 * 119.99929 * 331.39776 * 8 7 6 10 10 N 1.34779 * 119.99871 * 151.40138 * 8 7 6 11 11 C 1.47155 * 121.21081 * 173.93885 * 10 8 7 12 12 C 1.52830 * 107.97728 * 122.73744 * 11 10 8 13 13 C 1.53092 * 110.54374 * 57.36929 * 12 11 10 14 14 H 1.09003 * 112.49239 * 70.52026 * 13 12 11 15 15 C 1.56106 * 106.35386 * 195.41800 * 13 12 11 16 16 C 1.54511 * 102.61903 * 78.37143 * 15 13 12 17 17 N 1.47430 * 107.14803 * 22.83461 * 16 15 13 18 18 C 1.36944 * 126.05984 * 181.64600 * 17 16 15 19 19 H 1.07996 * 119.99660 * 185.43912 * 18 17 16 20 20 C 1.38811 * 119.99533 * 5.43758 * 18 17 16 21 21 N 1.31613 * 120.00574 * 23.26007 * 20 18 17 22 22 Si 1.86798 * 119.99492 * 203.25212 * 20 18 17 23 23 H 1.48509 * 109.47011 * 95.01811 * 22 20 18 24 24 H 1.48498 * 109.47228 * 215.01178 * 22 20 18 25 25 H 1.48506 * 109.47534 * 335.01767 * 22 20 18 26 26 C 1.46464 * 107.87877 * 1.62833 * 17 16 15 27 27 H 1.09009 * 108.42283 * 89.23921 * 26 17 16 28 28 C 1.46751 * 121.21407 * 353.96062 * 10 8 7 29 29 C 1.41292 * 107.17046 * 359.60672 * 7 6 5 30 30 N 1.30445 * 108.02467 * 0.24337 * 29 7 6 31 31 H 1.08994 * 109.47459 * 299.99890 * 1 2 3 32 32 H 1.08998 * 109.47253 * 59.99958 * 1 2 3 33 33 H 1.09006 * 109.46970 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.47451 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47089 * 300.00142 * 3 2 1 36 36 H 1.09004 * 109.46865 * 59.99829 * 3 2 1 37 37 H 1.09006 * 109.47270 * 300.00049 * 4 2 1 38 38 H 1.08998 * 109.47077 * 59.99723 * 4 2 1 39 39 H 1.08997 * 109.47145 * 179.97438 * 4 2 1 40 40 H 1.07997 * 126.29271 * 0.03273 * 6 5 2 41 41 H 1.09001 * 109.75960 * 3.11917 * 11 10 8 42 42 H 1.08999 * 109.75871 * 242.36156 * 11 10 8 43 43 H 1.09003 * 109.25574 * 177.63251 * 12 11 10 44 44 H 1.08997 * 109.25784 * 297.10624 * 12 11 10 45 45 H 1.08995 * 110.78747 * 320.08773 * 15 13 12 46 46 H 1.09002 * 110.93498 * 196.72307 * 15 13 12 47 47 H 1.08999 * 109.89974 * 263.45748 * 16 15 13 48 48 H 1.09005 * 110.05005 * 142.30198 * 16 15 13 49 49 H 0.96998 * 120.00533 * 179.97438 * 21 20 18 50 50 H 1.08992 * 109.23113 * 352.81104 * 28 10 8 51 51 H 1.09003 * 109.22868 * 112.18072 * 28 10 8 52 52 H 1.07998 * 125.98737 * 180.24133 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 2.0187 -2.0192 1.3897 7 6 2.5557 -2.2545 2.6394 8 6 2.7493 -3.5705 3.2752 9 8 2.0116 -4.4956 2.9948 10 7 3.7440 -3.7482 4.1671 11 6 3.8814 -5.0080 4.9152 12 6 5.2736 -5.5732 4.6355 13 6 6.3530 -4.5595 5.0241 14 1 6.4367 -4.4327 6.1034 15 6 7.6744 -5.0439 4.3487 16 6 7.4926 -4.5858 2.8842 17 7 6.5176 -3.4800 2.8926 18 6 6.0504 -2.8090 1.7940 19 1 5.4021 -1.9543 1.9187 20 6 6.4101 -3.2275 0.5203 21 7 6.7905 -4.4713 0.3191 22 14 6.3541 -2.0253 -0.9083 23 1 7.7004 -1.4313 -1.1085 24 1 5.9406 -2.7412 -2.1418 25 1 5.3769 -0.9475 -0.6103 26 6 6.1371 -3.2265 4.2840 27 1 6.8292 -2.4958 4.7028 28 6 4.7291 -2.6923 4.4281 29 6 2.8908 -0.9983 3.1927 30 7 2.5675 -0.0771 2.3276 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 1.6767 -1.7489 -1.2493 38 1 1.6767 -0.2074 -2.1392 39 1 3.1300 -0.7208 -1.2494 40 1 1.6619 -2.7663 0.6963 41 1 3.1225 -5.7173 4.5850 42 1 3.7688 -4.8170 5.9824 43 1 5.4134 -6.4867 5.2135 44 1 5.3616 -5.8028 3.5736 45 1 7.7632 -6.1287 4.4063 46 1 8.5418 -4.5619 4.7997 47 1 7.1126 -5.4109 2.2819 48 1 8.4438 -4.2390 2.4803 49 1 7.0415 -4.7638 -0.5710 50 1 4.5797 -1.8785 3.7185 51 1 4.5906 -2.3144 5.4411 52 1 3.3364 -0.8303 4.1620 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042125683.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:21 Heat of formation + Delta-G solvation = 79.398793 kcal Electronic energy + Delta-G solvation = -33516.636165 eV Core-core repulsion = 29518.951037 eV Total energy + Delta-G solvation = -3997.685128 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.23641 -39.58798 -37.81954 -36.62788 -34.68069 -33.01032 -31.39641 -30.51573 -29.84488 -28.89842 -28.30574 -27.56654 -27.38418 -24.75030 -24.01382 -23.26814 -21.99387 -21.32162 -20.01333 -19.49746 -19.28268 -18.21413 -17.01644 -16.35767 -15.91505 -15.38123 -15.25198 -14.92168 -14.52329 -14.44040 -14.32079 -14.01470 -13.84085 -13.55665 -13.44235 -13.04247 -12.60938 -12.47090 -12.45115 -12.43268 -12.29241 -12.17643 -11.91101 -11.88303 -11.51582 -11.43481 -11.34522 -11.28052 -11.20040 -10.80194 -10.73636 -10.70988 -10.57697 -10.14289 -9.86954 -9.75764 -9.70314 -9.47038 -9.21933 -9.08404 -8.53144 -8.26004 -7.89708 -6.76952 -5.68395 -2.98054 2.03215 2.54205 2.62965 3.36135 3.43906 3.45562 3.55373 4.07014 4.37943 4.51901 4.65037 4.74561 4.99097 5.04122 5.12754 5.25512 5.33333 5.36722 5.41138 5.46489 5.52913 5.56471 5.58789 5.63277 5.66914 5.67748 5.79644 5.80949 5.85763 5.87501 5.90100 6.02986 6.09444 6.11665 6.12991 6.17475 6.26025 6.29870 6.35265 6.44434 6.61725 6.69454 6.74156 6.82630 7.10224 7.19833 7.21586 7.39871 7.69526 7.83527 7.91359 8.11021 8.28130 8.89556 9.19807 9.87264 10.54150 11.39710 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011178 B = 0.005267 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.222915 B = 5314.989531 C = 6800.549485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.180 3.820 3 C -0.143 4.143 4 C -0.168 4.168 5 N -0.352 5.352 6 C 0.128 3.872 7 C -0.268 4.268 8 C 0.611 3.389 9 O -0.565 6.565 10 N -0.589 5.589 11 C 0.119 3.881 12 C -0.123 4.123 13 C -0.102 4.102 14 H 0.075 0.925 15 C -0.138 4.138 16 C 0.159 3.841 17 N -0.581 5.581 18 C -0.215 4.215 19 H 0.076 0.924 20 C -0.002 4.002 21 N -0.903 5.903 22 Si 0.887 3.113 23 H -0.292 1.292 24 H -0.295 1.295 25 H -0.280 1.280 26 C 0.152 3.848 27 H 0.027 0.973 28 C 0.097 3.903 29 C 0.074 3.926 30 N -0.297 5.297 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.177 0.823 41 H 0.085 0.915 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.083 0.917 45 H 0.059 0.941 46 H 0.052 0.948 47 H 0.068 0.932 48 H 0.019 0.981 49 H 0.249 0.751 50 H 0.100 0.900 51 H 0.055 0.945 52 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.439 6.483 4.985 11.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.097 3.903 3 C -0.200 4.200 4 C -0.226 4.226 5 N -0.132 5.132 6 C -0.023 4.023 7 C -0.283 4.283 8 C 0.401 3.599 9 O -0.445 6.445 10 N -0.320 5.320 11 C -0.004 4.004 12 C -0.161 4.161 13 C -0.121 4.121 14 H 0.093 0.907 15 C -0.176 4.176 16 C 0.034 3.966 17 N -0.306 5.306 18 C -0.343 4.343 19 H 0.094 0.906 20 C -0.200 4.200 21 N -0.549 5.549 22 Si 0.719 3.281 23 H -0.219 1.219 24 H -0.222 1.222 25 H -0.205 1.205 26 C 0.044 3.956 27 H 0.045 0.955 28 C -0.027 4.027 29 C -0.113 4.113 30 N -0.117 5.117 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.194 0.806 41 H 0.103 0.897 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.102 0.898 45 H 0.078 0.922 46 H 0.071 0.929 47 H 0.085 0.915 48 H 0.038 0.962 49 H 0.060 0.940 50 H 0.118 0.882 51 H 0.073 0.927 52 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -8.894 7.324 4.215 12.268 hybrid contribution 0.431 -0.391 -0.763 0.960 sum -8.462 6.933 3.452 11.472 Atomic orbital electron populations 1.22259 0.92962 1.03205 1.03174 1.20742 0.94178 0.93859 0.81483 1.21901 1.02621 0.92755 1.02742 1.22348 1.03351 1.01126 0.95796 1.48604 1.46584 1.04112 1.13940 1.22643 0.96654 0.86191 0.96782 1.20047 1.16202 0.94141 0.97895 1.17096 0.79373 0.86160 0.77315 1.90686 1.47629 1.43158 1.63008 1.47512 1.27430 1.15986 1.41056 1.21450 0.98171 0.86301 0.94435 1.21833 0.93491 0.97139 1.03615 1.22424 0.95595 0.96427 0.97696 0.90721 1.23049 0.96096 0.99633 0.98813 1.21359 0.92209 0.92131 0.90889 1.44365 1.47261 1.39309 0.99681 1.18800 1.25741 1.06515 0.83287 0.90593 1.24570 1.02885 0.95784 0.96743 1.70030 1.50531 1.13542 1.20790 0.86461 0.77689 0.81137 0.82856 1.21941 1.22175 1.20547 1.20752 0.92624 0.94309 0.87930 0.95546 1.21928 0.89319 0.91403 1.00073 1.24096 0.97988 0.89872 0.99377 1.77022 1.18313 1.22093 0.94254 0.91594 0.90464 0.91676 0.91365 0.91145 0.90986 0.91323 0.90143 0.90879 0.80607 0.89693 0.92364 0.92343 0.89845 0.92228 0.92903 0.91454 0.96242 0.94029 0.88169 0.92686 0.79544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 8.72 37.16 0.32 -1.23 16 2 C 0.18 2.26 1.23 -131.82 -0.16 2.10 16 3 C -0.14 -1.66 8.07 37.16 0.30 -1.36 16 4 C -0.17 -2.09 8.28 37.16 0.31 -1.78 16 5 N -0.35 -5.63 3.41 -48.11 -0.16 -5.79 16 6 C 0.13 2.25 10.50 -16.56 -0.17 2.08 16 7 C -0.27 -5.04 5.58 -105.07 -0.59 -5.63 16 8 C 0.61 12.61 7.64 -12.51 -0.10 12.51 16 9 O -0.56 -13.10 16.49 5.28 0.09 -13.01 16 10 N -0.59 -10.94 2.97 -175.36 -0.52 -11.46 16 11 C 0.12 1.99 6.44 -3.77 -0.02 1.96 16 12 C -0.12 -2.11 5.04 -26.77 -0.13 -2.24 16 13 C -0.10 -1.70 3.68 -88.39 -0.33 -2.03 16 14 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 15 C -0.14 -2.48 6.33 -24.27 -0.15 -2.64 16 16 C 0.16 3.72 4.98 -2.74 -0.01 3.71 16 17 N -0.58 -13.89 3.20 -164.42 -0.53 -14.41 16 18 C -0.22 -5.70 9.54 -15.06 -0.14 -5.84 16 19 H 0.08 2.02 6.70 -52.49 -0.35 1.67 16 20 C 0.00 -0.07 5.30 -17.43 -0.09 -0.16 16 21 N -0.90 -26.33 10.99 55.49 0.61 -25.72 16 22 Si 0.89 21.99 29.61 -169.99 -5.03 16.96 16 23 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 24 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 25 H -0.28 -6.70 6.91 56.52 0.39 -6.31 16 26 C 0.15 2.92 2.97 -68.30 -0.20 2.72 16 27 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 28 C 0.10 1.68 4.46 -4.78 -0.02 1.65 16 29 C 0.07 1.24 9.62 -16.98 -0.16 1.07 16 30 N -0.30 -5.04 11.56 30.86 0.36 -4.68 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.84 8.03 -51.93 -0.42 0.43 16 37 H 0.07 0.83 7.33 -51.93 -0.38 0.45 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.07 1.13 7.94 -51.93 -0.41 0.72 16 40 H 0.18 2.89 7.52 -52.49 -0.39 2.49 16 41 H 0.08 1.51 7.06 -51.93 -0.37 1.15 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.08 1.82 6.85 -51.93 -0.36 1.46 16 45 H 0.06 1.00 7.97 -51.93 -0.41 0.58 16 46 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.07 1.80 6.38 -51.93 -0.33 1.47 16 48 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 49 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 50 H 0.10 1.85 2.72 -51.93 -0.14 1.71 16 51 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 52 H 0.19 2.64 6.38 -52.49 -0.33 2.31 16 LS Contribution 396.77 15.07 5.98 5.98 Total: -1.00 -33.05 396.77 -9.12 -42.17 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -8.54 Total: 5.09 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: -1.36 Total: 4.89 kcal Atomic # 7 Polarization: -61.83 SS G_CDS: -0.24 Total: -62.07 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.09 Total: -13.01 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.05 -9.12 -42.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042125683.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.568 kcal (2) G-P(sol) polarization free energy of solvation -33.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds