Wall clock time and date at job start Wed Apr 1 2020 04:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46817 * 2 1 4 4 C 1.53005 * 109.47103 * 240.00721 * 2 1 3 5 5 N 1.46496 * 109.47385 * 120.00222 * 2 1 3 6 6 C 1.34264 * 125.75502 * 75.00368 * 5 2 1 7 7 C 1.38034 * 107.41849 * 180.02562 * 6 5 2 8 8 C 1.47432 * 126.41421 * 179.97438 * 7 6 5 9 9 O 1.21598 * 119.99953 * 18.47981 * 8 7 6 10 10 N 1.34775 * 119.99649 * 198.49007 * 8 7 6 11 11 C 1.46597 * 119.75753 * 6.42450 * 10 8 7 12 12 C 1.53883 * 110.70996 * 132.27893 * 11 10 8 13 13 C 1.51980 * 107.28947 * 51.81360 * 12 11 10 14 14 H 1.08996 * 111.01251 * 56.51468 * 13 12 11 15 15 C 1.53696 * 115.61402 * 184.24286 * 13 12 11 16 16 C 1.55345 * 101.90212 * 153.51491 * 15 13 12 17 17 N 1.48152 * 107.01893 * 337.90560 * 16 15 13 18 18 C 1.36938 * 126.40128 * 174.88513 * 17 16 15 19 19 H 1.08000 * 120.00065 * 176.57900 * 18 17 16 20 20 C 1.38813 * 119.99914 * 356.58071 * 18 17 16 21 21 N 1.31614 * 120.00238 * 209.72300 * 20 18 17 22 22 Si 1.86801 * 119.99757 * 29.44775 * 20 18 17 23 23 H 1.48502 * 109.46939 * 275.72869 * 22 20 18 24 24 H 1.48499 * 109.47511 * 35.72713 * 22 20 18 25 25 H 1.48500 * 109.46995 * 155.73428 * 22 20 18 26 26 C 1.45513 * 107.20392 * 354.62569 * 17 16 15 27 27 H 1.08998 * 109.57068 * 273.61385 * 26 17 16 28 28 C 1.46264 * 120.14829 * 186.54891 * 10 8 7 29 29 C 1.41287 * 107.17164 * 0.23535 * 7 6 5 30 30 N 1.30449 * 108.02239 * 359.59762 * 29 7 6 31 31 H 1.08991 * 109.47330 * 299.99376 * 1 2 3 32 32 H 1.09003 * 109.47357 * 59.99867 * 1 2 3 33 33 H 1.09006 * 109.46704 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47295 * 179.97438 * 3 2 1 35 35 H 1.08995 * 109.47850 * 300.00127 * 3 2 1 36 36 H 1.09000 * 109.46588 * 60.00428 * 3 2 1 37 37 H 1.09006 * 109.46997 * 299.99399 * 4 2 1 38 38 H 1.08996 * 109.47113 * 59.99535 * 4 2 1 39 39 H 1.09004 * 109.46821 * 179.97438 * 4 2 1 40 40 H 1.08000 * 126.28729 * 0.02562 * 6 5 2 41 41 H 1.08998 * 109.22555 * 11.96559 * 11 10 8 42 42 H 1.08996 * 109.19738 * 252.57937 * 11 10 8 43 43 H 1.09004 * 109.89830 * 292.36650 * 12 11 10 44 44 H 1.09000 * 109.89103 * 171.25880 * 12 11 10 45 45 H 1.09000 * 110.95933 * 271.85302 * 15 13 12 46 46 H 1.09006 * 110.95773 * 35.55197 * 15 13 12 47 47 H 1.08997 * 110.04028 * 218.50474 * 16 15 13 48 48 H 1.09000 * 109.82716 * 97.18885 * 16 15 13 49 49 H 0.97006 * 119.99584 * 354.69702 * 21 20 18 50 50 H 1.09003 * 109.62943 * 112.22193 * 28 10 8 51 51 H 1.08999 * 109.72772 * 351.15795 * 28 10 8 52 52 H 1.08004 * 125.99081 * 179.73497 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2494 5 7 2.0184 -0.6906 1.1961 6 6 2.0141 -2.0189 1.3918 7 6 2.5563 -2.2546 2.6391 8 6 2.7494 -3.5706 3.2750 9 8 2.7421 -4.5802 2.5974 10 7 2.9339 -3.6546 4.6074 11 6 2.8014 -2.4534 5.4374 12 6 1.9180 -2.7353 6.6655 13 6 2.4744 -3.9744 7.3473 14 1 3.5242 -3.8392 7.6074 15 6 1.6682 -4.4895 8.5502 16 6 2.0280 -6.0007 8.5536 17 7 2.4821 -6.3414 7.1852 18 6 2.9866 -7.5458 6.7726 19 1 3.2359 -7.6993 5.7331 20 6 3.1774 -8.5694 7.6906 21 7 4.1348 -9.4526 7.5020 22 14 2.0801 -8.6889 9.1977 23 1 2.6088 -7.8035 10.2663 24 1 0.7019 -8.2662 8.8414 25 1 2.0576 -10.0920 9.6836 26 6 2.2862 -5.1591 6.3598 27 1 1.2683 -5.1506 5.9700 28 6 3.2677 -4.9385 5.2234 29 6 2.8860 -0.9981 3.1948 30 7 2.5675 -0.0772 2.3275 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6765 1.9562 0.8900 37 1 1.6767 -1.7489 -1.2494 38 1 1.6766 -0.2072 -2.1393 39 1 3.1300 -0.7207 -1.2496 40 1 1.6528 -2.7657 0.7003 41 1 2.3505 -1.6565 4.8461 42 1 3.7898 -2.1375 5.7710 43 1 0.8904 -2.9156 6.3498 44 1 1.9533 -1.8878 7.3500 45 1 1.9922 -4.0069 9.4723 46 1 0.5990 -4.3470 8.3927 47 1 1.1503 -6.5931 8.8119 48 1 2.8294 -6.1883 9.2683 49 1 4.6569 -9.4347 6.6846 50 1 4.2863 -4.9053 5.6101 51 1 3.1721 -5.7360 4.4865 52 1 3.3266 -0.8297 4.1664 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042125684.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:26 Heat of formation + Delta-G solvation = 93.595987 kcal Electronic energy + Delta-G solvation = -31572.626625 eV Core-core repulsion = 27575.557134 eV Total energy + Delta-G solvation = -3997.069491 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.80996 -40.00518 -38.21579 -37.09074 -35.55685 -32.95209 -31.57098 -31.18002 -30.80843 -29.23702 -28.74411 -27.98430 -27.83264 -24.80690 -24.27617 -23.08261 -22.43046 -21.51211 -20.57471 -19.86393 -19.62928 -19.04586 -17.30110 -17.10539 -16.29005 -15.78880 -15.66378 -15.25942 -15.09099 -14.92777 -14.60456 -14.39823 -14.00156 -13.81041 -13.55704 -13.38598 -13.13047 -12.97897 -12.87856 -12.81095 -12.78350 -12.67948 -12.52463 -12.30465 -12.11438 -11.76879 -11.71851 -11.67196 -11.32059 -11.09193 -11.02750 -10.89587 -10.50905 -10.47850 -9.94983 -9.73691 -9.69895 -9.59707 -9.51208 -9.14637 -8.82592 -8.36103 -8.29001 -7.00925 -6.29577 -3.05928 1.44030 2.01728 2.06272 3.19710 3.45726 3.53286 3.55419 3.72149 3.91947 4.19779 4.30399 4.49552 4.53601 4.66098 4.73595 4.85056 4.91047 4.93807 4.99573 5.07825 5.11871 5.13682 5.18340 5.21421 5.26630 5.29982 5.41541 5.44620 5.46045 5.50532 5.57600 5.62541 5.64817 5.73376 5.86178 5.91103 5.93092 5.98785 6.07251 6.21959 6.25679 6.32778 6.41791 6.56206 6.65120 6.68145 6.76555 6.85826 7.00490 7.36727 7.68267 7.78796 8.40843 8.47118 9.11194 9.70174 10.35998 11.22053 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022754 B = 0.002502 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.272269 B =11189.446738 C =11844.646241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.176 3.824 3 C -0.143 4.143 4 C -0.163 4.163 5 N -0.352 5.352 6 C 0.125 3.875 7 C -0.284 4.284 8 C 0.590 3.410 9 O -0.548 6.548 10 N -0.599 5.599 11 C 0.086 3.914 12 C -0.118 4.118 13 C -0.115 4.115 14 H 0.081 0.919 15 C -0.119 4.119 16 C 0.101 3.899 17 N -0.599 5.599 18 C -0.332 4.332 19 H 0.081 0.919 20 C -0.020 4.020 21 N -0.916 5.916 22 Si 1.065 2.935 23 H -0.293 1.293 24 H -0.292 1.292 25 H -0.301 1.301 26 C 0.160 3.840 27 H 0.026 0.974 28 C 0.120 3.880 29 C 0.064 3.936 30 N -0.295 5.295 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.183 0.817 41 H 0.099 0.901 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.066 0.934 46 H 0.064 0.936 47 H 0.038 0.962 48 H 0.048 0.952 49 H 0.263 0.737 50 H 0.069 0.931 51 H 0.092 0.908 52 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.457 25.401 -12.743 29.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.094 3.906 3 C -0.201 4.201 4 C -0.221 4.221 5 N -0.132 5.132 6 C -0.026 4.026 7 C -0.299 4.299 8 C 0.379 3.621 9 O -0.427 6.427 10 N -0.332 5.332 11 C -0.037 4.037 12 C -0.157 4.157 13 C -0.134 4.134 14 H 0.099 0.901 15 C -0.157 4.157 16 C -0.024 4.024 17 N -0.325 5.325 18 C -0.459 4.459 19 H 0.099 0.901 20 C -0.220 4.220 21 N -0.557 5.557 22 Si 0.899 3.101 23 H -0.221 1.221 24 H -0.220 1.220 25 H -0.229 1.229 26 C 0.051 3.949 27 H 0.043 0.957 28 C -0.002 4.002 29 C -0.123 4.123 30 N -0.114 5.114 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.200 0.800 41 H 0.117 0.883 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.093 0.907 45 H 0.085 0.915 46 H 0.083 0.917 47 H 0.056 0.944 48 H 0.066 0.934 49 H 0.074 0.926 50 H 0.087 0.913 51 H 0.110 0.890 52 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -6.718 25.223 -12.121 28.780 hybrid contribution 0.154 -0.146 -1.116 1.136 sum -6.564 25.078 -13.236 29.106 Atomic orbital electron populations 1.22285 0.92596 1.03435 1.03598 1.20854 0.94621 0.93930 0.81171 1.21912 1.02297 0.92631 1.03212 1.22292 1.02614 1.01275 0.95940 1.48809 1.46121 1.04150 1.14117 1.22801 0.96715 0.86397 0.96714 1.20286 1.17746 0.94372 0.97515 1.17304 0.76022 0.87178 0.81601 1.90773 1.51951 1.37067 1.62882 1.47591 1.69709 1.09947 1.05908 1.22429 1.00141 0.87983 0.93116 1.21788 0.99524 0.98300 0.96096 1.22294 1.00024 0.94867 0.96248 0.90105 1.22396 0.99417 0.96221 0.97661 1.22213 0.97872 0.93393 0.88910 1.44463 1.75422 1.08683 1.03979 1.19990 1.40187 0.89379 0.96354 0.90086 1.25616 0.98776 0.95231 1.02408 1.70909 1.16346 1.42767 1.25643 0.83889 0.75967 0.74472 0.75798 1.22086 1.22001 1.22861 1.20912 0.95903 0.87101 0.90973 0.95675 1.21334 0.98590 0.84002 0.96323 1.24628 0.98856 0.89701 0.99109 1.77134 1.18092 1.22136 0.94079 0.91399 0.90144 0.91573 0.91512 0.90823 0.90848 0.91281 0.89815 0.91268 0.80040 0.88314 0.91574 0.91359 0.90697 0.91487 0.91749 0.94437 0.93395 0.92647 0.91283 0.89005 0.78149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.89 8.72 37.16 0.32 -0.57 16 2 C 0.18 1.18 1.23 -131.82 -0.16 1.02 16 3 C -0.14 -0.86 8.07 37.16 0.30 -0.56 16 4 C -0.16 -0.87 8.28 37.16 0.31 -0.56 16 5 N -0.35 -3.48 3.41 -48.11 -0.16 -3.64 16 6 C 0.12 1.41 10.44 -16.56 -0.17 1.24 16 7 C -0.28 -3.77 5.77 -105.07 -0.61 -4.37 16 8 C 0.59 9.97 7.64 -12.52 -0.10 9.87 16 9 O -0.55 -11.40 16.33 5.28 0.09 -11.32 16 10 N -0.60 -9.62 2.98 -175.26 -0.52 -10.14 16 11 C 0.09 1.02 4.86 -3.53 -0.02 1.00 16 12 C -0.12 -1.45 5.76 -26.79 -0.15 -1.60 16 13 C -0.11 -1.85 2.58 -89.51 -0.23 -2.08 16 14 H 0.08 1.33 8.12 -51.93 -0.42 0.91 16 15 C -0.12 -1.97 6.56 -25.13 -0.16 -2.13 16 16 C 0.10 2.21 4.84 -1.89 -0.01 2.20 16 17 N -0.60 -14.88 3.32 -162.88 -0.54 -15.42 16 18 C -0.33 -9.63 10.03 -15.06 -0.15 -9.78 16 19 H 0.08 2.49 7.70 -52.49 -0.40 2.09 16 20 C -0.02 -0.59 5.46 -17.43 -0.10 -0.68 16 21 N -0.92 -29.06 13.70 55.49 0.76 -28.30 16 22 Si 1.07 27.17 24.69 -169.99 -4.20 22.97 16 23 H -0.29 -7.00 6.29 56.52 0.36 -6.65 16 24 H -0.29 -7.13 6.24 56.52 0.35 -6.78 16 25 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 26 C 0.16 3.29 2.80 -67.82 -0.19 3.10 16 27 H 0.03 0.56 7.94 -51.93 -0.41 0.15 16 28 C 0.12 2.38 5.62 -4.79 -0.03 2.35 16 29 C 0.06 0.71 9.67 -16.98 -0.16 0.54 16 30 N -0.30 -3.31 11.56 30.86 0.36 -2.95 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 36 H 0.07 0.51 8.03 -51.93 -0.42 0.10 16 37 H 0.07 0.37 7.34 -51.93 -0.38 -0.01 16 38 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.18 1.78 7.53 -52.49 -0.40 1.39 16 41 H 0.10 0.99 3.76 -51.93 -0.20 0.79 16 42 H 0.07 0.68 8.05 -51.93 -0.42 0.26 16 43 H 0.07 0.88 7.99 -51.93 -0.41 0.46 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 46 H 0.06 0.99 8.13 -51.93 -0.42 0.56 16 47 H 0.04 0.86 4.86 -51.93 -0.25 0.61 16 48 H 0.05 1.11 6.33 -51.93 -0.33 0.78 16 49 H 0.26 8.29 8.73 -40.82 -0.36 7.93 16 50 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 51 H 0.09 2.11 6.72 -51.93 -0.35 1.76 16 52 H 0.20 1.74 5.50 -52.48 -0.29 1.45 16 LS Contribution 392.13 15.07 5.91 5.91 Total: -1.00 -35.87 392.13 -8.20 -44.07 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -8.58 Total: -0.18 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -1.31 Total: -1.00 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: -0.11 Total: -60.45 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.09 Total: -11.32 kcal Atomic # 14 Polarization: 27.17 SS G_CDS: -4.20 Total: 22.97 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.87 -8.20 -44.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042125684.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.664 kcal (2) G-P(sol) polarization free energy of solvation -35.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds