Wall clock time and date at job start Wed Apr 1 2020 04:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46809 * 2 1 4 4 C 1.53002 * 109.47036 * 240.00056 * 2 1 3 5 5 N 1.46501 * 109.47309 * 119.99922 * 2 1 3 6 6 C 1.34261 * 125.75178 * 74.99601 * 5 2 1 7 7 C 1.38050 * 107.41585 * 180.02562 * 6 5 2 8 8 C 1.47428 * 126.41380 * 179.97438 * 7 6 5 9 9 O 1.21606 * 120.00075 * 336.79951 * 8 7 6 10 10 N 1.34771 * 119.99546 * 156.80295 * 8 7 6 11 11 C 1.46596 * 119.75658 * 353.81172 * 10 8 7 12 12 C 1.53889 * 110.70966 * 227.76695 * 11 10 8 13 13 C 1.51972 * 107.29159 * 308.19033 * 12 11 10 14 14 H 1.09002 * 111.01571 * 303.48548 * 13 12 11 15 15 C 1.53700 * 115.01011 * 175.45170 * 13 12 11 16 16 C 1.55247 * 101.71644 * 206.30733 * 15 13 12 17 17 N 1.48159 * 107.07194 * 22.82584 * 16 15 13 18 18 C 1.36936 * 126.39750 * 184.86319 * 17 16 15 19 19 H 1.07999 * 119.99691 * 184.18152 * 18 17 16 20 20 C 1.38812 * 119.99970 * 4.18101 * 18 17 16 21 21 N 1.31619 * 120.00195 * 6.87889 * 20 18 17 22 22 Si 1.86800 * 119.99731 * 186.87681 * 20 18 17 23 23 H 1.48500 * 109.47181 * 265.01448 * 22 20 18 24 24 H 1.48499 * 109.47285 * 25.01430 * 22 20 18 25 25 H 1.48500 * 109.46988 * 145.01929 * 22 20 18 26 26 C 1.45509 * 107.20171 * 4.59431 * 17 16 15 27 27 H 1.09005 * 109.56831 * 86.89465 * 26 17 16 28 28 C 1.47803 * 119.75111 * 173.83777 * 10 8 7 29 29 C 1.41287 * 107.16793 * 0.23035 * 7 6 5 30 30 N 1.30443 * 108.02572 * 359.61599 * 29 7 6 31 31 H 1.08999 * 109.47537 * 299.99930 * 1 2 3 32 32 H 1.09002 * 109.47536 * 60.00259 * 1 2 3 33 33 H 1.09005 * 109.47013 * 180.02562 * 1 2 3 34 34 H 1.09012 * 109.46957 * 179.97438 * 3 2 1 35 35 H 1.08995 * 109.47521 * 299.99617 * 3 2 1 36 36 H 1.08999 * 109.47537 * 60.00540 * 3 2 1 37 37 H 1.08995 * 109.47053 * 299.99775 * 4 2 1 38 38 H 1.08995 * 109.46888 * 60.00056 * 4 2 1 39 39 H 1.09003 * 109.46580 * 179.97438 * 4 2 1 40 40 H 1.08000 * 126.29085 * 0.04826 * 6 5 2 41 41 H 1.09009 * 109.22711 * 107.45364 * 11 10 8 42 42 H 1.08996 * 109.19789 * 348.06369 * 11 10 8 43 43 H 1.09003 * 109.89246 * 188.74175 * 12 11 10 44 44 H 1.09000 * 109.95412 * 67.67271 * 12 11 10 45 45 H 1.08998 * 110.95866 * 324.65899 * 15 13 12 46 46 H 1.08997 * 110.95842 * 88.36104 * 15 13 12 47 47 H 1.08989 * 110.02813 * 263.39690 * 16 15 13 48 48 H 1.09005 * 109.78476 * 142.11302 * 16 15 13 49 49 H 0.96999 * 120.00188 * 180.02562 * 21 20 18 50 50 H 1.09002 * 110.05878 * 9.49879 * 28 10 8 51 51 H 1.08998 * 110.06631 * 247.93859 * 28 10 8 52 52 H 1.08002 * 125.99074 * 179.73467 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0184 -0.6906 1.1962 6 6 2.0139 -2.0188 1.3919 7 6 2.5562 -2.2545 2.6394 8 6 2.7492 -3.5705 3.2753 9 8 2.0719 -4.5188 2.9280 10 7 3.6763 -3.7223 4.2417 11 6 4.5816 -2.6146 4.5620 12 6 6.0380 -3.1061 4.6357 13 6 6.0651 -4.2994 5.5763 14 1 5.6609 -4.0358 6.5538 15 6 7.4267 -5.0023 5.6953 16 6 7.0043 -6.4430 6.0902 17 7 5.6063 -6.6265 5.6353 18 6 4.8143 -7.7200 5.8639 19 1 3.8287 -7.7739 5.4256 20 6 5.2782 -8.7590 6.6589 21 7 6.4199 -8.6363 7.3022 22 14 4.2822 -10.3314 6.8158 23 1 3.4274 -10.2571 8.0278 24 1 3.4246 -10.4961 5.6147 25 1 5.2026 -11.4912 6.9296 26 6 5.2299 -5.4251 4.9058 27 1 5.5248 -5.5248 3.8612 28 6 3.7730 -5.0046 4.9704 29 6 2.8861 -0.9980 3.1948 30 7 2.5674 -0.0771 2.3277 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 1.6767 -1.7489 -1.2492 38 1 1.6766 -0.2074 -2.1392 39 1 3.1300 -0.7208 -1.2494 40 1 1.6528 -2.7657 0.7003 41 1 4.2983 -2.1859 5.5233 42 1 4.4994 -1.8498 3.7897 43 1 6.6778 -2.3134 5.0236 44 1 6.3797 -3.4067 3.6452 45 1 7.9546 -4.9937 4.7417 46 1 8.0331 -4.5474 6.4786 47 1 7.0621 -6.5658 7.1716 48 1 7.6534 -7.1662 5.5964 49 1 6.7443 -9.3625 7.8574 50 1 3.1454 -5.7555 4.4905 51 1 3.4685 -4.8689 6.0081 52 1 3.3269 -0.8295 4.1663 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042125685.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:31 Heat of formation + Delta-G solvation = 82.815220 kcal Electronic energy + Delta-G solvation = -31492.755648 eV Core-core repulsion = 27495.218668 eV Total energy + Delta-G solvation = -3997.536981 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.74659 -39.81244 -38.02320 -37.04451 -35.30361 -32.82528 -31.41643 -31.00310 -30.60858 -29.01855 -28.33329 -27.95883 -27.78745 -24.76771 -24.26259 -23.16044 -22.14276 -21.54157 -20.08612 -19.83085 -19.58886 -18.92415 -17.23454 -16.60628 -16.16427 -15.70742 -15.56962 -15.15676 -14.89615 -14.61419 -14.40282 -14.20134 -14.00458 -13.82484 -13.56998 -13.14943 -13.12466 -12.88118 -12.81235 -12.72792 -12.63190 -12.44421 -12.27402 -12.06696 -11.81388 -11.70428 -11.69788 -11.44804 -11.16984 -11.03211 -10.88697 -10.71107 -10.68045 -10.11328 -9.88858 -9.83407 -9.63342 -9.61626 -9.52279 -9.40873 -8.76644 -8.59662 -8.25385 -6.79179 -5.65129 -3.01256 1.49044 2.05299 2.12727 3.23486 3.44971 3.50963 3.53930 3.56891 3.94978 4.22519 4.33117 4.53390 4.55951 4.58466 4.88414 4.95365 4.97513 5.01798 5.12302 5.14062 5.17401 5.22356 5.24969 5.29207 5.33535 5.44721 5.48457 5.55282 5.61219 5.65282 5.68061 5.76141 5.76641 5.85050 6.01932 6.10360 6.14906 6.22387 6.24636 6.29679 6.47424 6.58496 6.64119 6.69232 6.81671 6.86430 7.14462 7.41245 7.52775 7.70187 7.76191 7.86597 8.30041 8.52059 9.23862 9.87584 10.54533 11.44586 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019239 B = 0.002528 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.055030 B =11075.302273 C =12043.308605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.177 3.823 3 C -0.143 4.143 4 C -0.163 4.163 5 N -0.353 5.353 6 C 0.123 3.877 7 C -0.284 4.284 8 C 0.590 3.410 9 O -0.550 6.550 10 N -0.601 5.601 11 C 0.095 3.905 12 C -0.120 4.120 13 C -0.112 4.112 14 H 0.077 0.923 15 C -0.136 4.136 16 C 0.170 3.830 17 N -0.591 5.591 18 C -0.225 4.225 19 H 0.079 0.921 20 C -0.008 4.008 21 N -0.921 5.921 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.280 1.280 25 H -0.291 1.291 26 C 0.156 3.844 27 H 0.024 0.976 28 C 0.118 3.882 29 C 0.070 3.930 30 N -0.296 5.296 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.182 0.818 41 H 0.064 0.936 42 H 0.092 0.908 43 H 0.072 0.928 44 H 0.066 0.934 45 H 0.054 0.946 46 H 0.059 0.941 47 H 0.069 0.931 48 H 0.027 0.973 49 H 0.251 0.749 50 H 0.092 0.908 51 H 0.070 0.930 52 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.360 22.440 -14.084 27.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.095 3.905 3 C -0.200 4.200 4 C -0.221 4.221 5 N -0.133 5.133 6 C -0.028 4.028 7 C -0.299 4.299 8 C 0.378 3.622 9 O -0.429 6.429 10 N -0.334 5.334 11 C -0.028 4.028 12 C -0.158 4.158 13 C -0.132 4.132 14 H 0.096 0.904 15 C -0.174 4.174 16 C 0.046 3.954 17 N -0.316 5.316 18 C -0.353 4.353 19 H 0.097 0.903 20 C -0.204 4.204 21 N -0.568 5.568 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.205 1.205 25 H -0.217 1.217 26 C 0.047 3.953 27 H 0.041 0.959 28 C -0.004 4.004 29 C -0.117 4.117 30 N -0.115 5.115 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.199 0.801 41 H 0.082 0.918 42 H 0.110 0.890 43 H 0.090 0.910 44 H 0.085 0.915 45 H 0.073 0.927 46 H 0.077 0.923 47 H 0.087 0.913 48 H 0.045 0.955 49 H 0.061 0.939 50 H 0.110 0.890 51 H 0.088 0.912 52 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -6.770 23.042 -14.511 28.060 hybrid contribution -0.351 -1.820 0.406 1.897 sum -7.121 21.222 -14.106 26.459 Atomic orbital electron populations 1.22286 0.92641 1.03450 1.03546 1.20841 0.94600 0.93916 0.81177 1.21911 1.02304 0.92649 1.03179 1.22288 1.02593 1.01262 0.95959 1.48790 1.46208 1.04149 1.14131 1.22791 0.96450 0.86389 0.97195 1.20313 1.17132 0.94482 0.97930 1.17320 0.79723 0.86436 0.78719 1.90765 1.47736 1.41263 1.63137 1.48020 1.33365 1.15120 1.36860 1.22241 0.90168 0.89310 1.01112 1.21814 0.95090 0.98486 1.00441 1.22268 0.97889 0.94507 0.98523 0.90445 1.22684 0.95608 0.98984 1.00171 1.21637 0.84301 0.89427 1.00061 1.44204 1.10795 1.13729 1.62864 1.19057 0.97521 0.93958 1.24803 0.90275 1.24778 0.97597 0.98852 0.99163 1.69932 1.21133 1.32073 1.33682 0.86141 0.78935 0.83185 0.77828 1.21673 1.20540 1.21728 1.21016 0.91905 0.87362 0.94996 0.95861 1.21733 0.99231 0.83583 0.95867 1.24429 0.98019 0.89658 0.99612 1.77124 1.18178 1.21971 0.94257 0.91436 0.90180 0.91547 0.91486 0.90862 0.90873 0.91311 0.89846 0.91264 0.80112 0.91755 0.88984 0.90962 0.91529 0.92677 0.92261 0.91261 0.95498 0.93851 0.88980 0.91215 0.78669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.93 8.72 37.16 0.32 -0.61 16 2 C 0.18 1.21 1.23 -131.82 -0.16 1.05 16 3 C -0.14 -0.87 8.07 37.16 0.30 -0.57 16 4 C -0.16 -0.86 8.28 37.16 0.31 -0.56 16 5 N -0.35 -3.54 3.41 -48.11 -0.16 -3.70 16 6 C 0.12 1.40 10.47 -16.56 -0.17 1.23 16 7 C -0.28 -3.80 5.64 -105.07 -0.59 -4.39 16 8 C 0.59 9.96 7.62 -12.52 -0.10 9.86 16 9 O -0.55 -11.32 16.35 5.27 0.09 -11.23 16 10 N -0.60 -9.74 3.01 -174.00 -0.52 -10.26 16 11 C 0.09 1.18 4.88 -3.53 -0.02 1.16 16 12 C -0.12 -1.59 5.72 -26.79 -0.15 -1.74 16 13 C -0.11 -1.93 2.61 -89.52 -0.23 -2.17 16 14 H 0.08 1.38 8.13 -51.93 -0.42 0.95 16 15 C -0.14 -2.51 6.54 -25.18 -0.16 -2.68 16 16 C 0.17 4.12 5.55 -1.94 -0.01 4.11 16 17 N -0.59 -15.11 3.35 -162.94 -0.55 -15.66 16 18 C -0.23 -6.32 9.84 -15.06 -0.15 -6.47 16 19 H 0.08 2.19 7.49 -52.49 -0.39 1.79 16 20 C -0.01 -0.22 5.46 -17.43 -0.10 -0.32 16 21 N -0.92 -27.17 10.52 55.49 0.58 -26.58 16 22 Si 0.91 22.58 29.56 -169.99 -5.02 17.56 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 26 C 0.16 3.28 2.76 -67.82 -0.19 3.09 16 27 H 0.02 0.54 7.93 -51.93 -0.41 0.13 16 28 C 0.12 2.32 5.73 -3.95 -0.02 2.30 16 29 C 0.07 0.79 9.59 -16.98 -0.16 0.63 16 30 N -0.30 -3.38 11.56 30.86 0.36 -3.02 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 35 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.07 0.53 8.03 -51.93 -0.42 0.11 16 37 H 0.07 0.36 7.34 -51.93 -0.38 -0.02 16 38 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.18 1.78 7.53 -52.49 -0.40 1.38 16 41 H 0.06 0.70 8.02 -51.92 -0.42 0.28 16 42 H 0.09 0.98 4.09 -51.93 -0.21 0.77 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.07 0.93 7.98 -51.93 -0.41 0.52 16 45 H 0.05 0.96 8.12 -51.93 -0.42 0.54 16 46 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.07 1.86 6.79 -51.94 -0.35 1.51 16 48 H 0.03 0.71 8.08 -51.93 -0.42 0.29 16 49 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 50 H 0.09 2.04 6.75 -51.93 -0.35 1.69 16 51 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 52 H 0.20 1.78 5.91 -52.49 -0.31 1.47 16 LS Contribution 399.72 15.07 6.02 6.02 Total: -1.00 -34.05 399.72 -9.18 -43.23 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -8.68 Total: -0.28 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -1.29 Total: 3.93 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: -0.29 Total: -59.22 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.09 Total: -11.23 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.05 -9.18 -43.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042125685.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.041 kcal (2) G-P(sol) polarization free energy of solvation -34.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds