Wall clock time and date at job start Wed Apr 1 2020 04:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.47336 * 2 1 4 4 C 1.52999 * 109.47419 * 119.99781 * 2 1 3 5 5 N 1.46502 * 109.47081 * 64.99821 * 4 2 1 6 6 C 1.34257 * 125.75580 * 125.30934 * 5 4 2 7 7 C 1.38047 * 107.41633 * 180.11037 * 6 5 4 8 8 C 1.47435 * 126.41331 * 179.86622 * 7 6 5 9 9 O 1.21603 * 119.99782 * 338.86747 * 8 7 6 10 10 N 1.34768 * 119.99889 * 158.85917 * 8 7 6 11 11 C 1.44472 * 117.13660 * 173.85908 * 10 8 7 12 12 C 1.50979 * 113.13461 * 147.99397 * 11 10 8 13 13 C 1.48615 * 116.02603 * 32.07702 * 12 11 10 14 14 H 1.08998 * 105.76634 * 206.02977 * 13 12 11 15 15 C 1.53318 * 114.96012 * 90.58171 * 13 12 11 16 16 C 1.54521 * 102.38157 * 196.30751 * 15 13 12 17 17 N 1.46885 * 106.66742 * 27.58797 * 16 15 13 18 18 C 1.36932 * 125.36035 * 164.88112 * 17 16 15 19 19 H 1.08003 * 119.99548 * 180.02562 * 18 17 16 20 20 C 1.38813 * 120.00267 * 0.02598 * 18 17 16 21 21 N 1.31623 * 119.99493 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00030 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47226 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.46850 * 120.00276 * 22 20 18 25 25 H 1.48498 * 109.46964 * 239.99912 * 22 20 18 26 26 C 1.48180 * 109.27783 * 344.86293 * 17 16 15 27 27 H 1.09004 * 109.73964 * 237.27560 * 26 17 16 28 28 C 1.43940 * 117.13931 * 353.59970 * 10 8 7 29 29 C 1.41290 * 107.17096 * 359.61043 * 7 6 5 30 30 N 1.30446 * 108.02142 * 0.23927 * 29 7 6 31 31 H 1.09001 * 109.47442 * 60.00143 * 1 2 3 32 32 H 1.09000 * 109.47700 * 180.02562 * 1 2 3 33 33 H 1.09009 * 109.47495 * 300.00104 * 1 2 3 34 34 H 1.08995 * 109.46942 * 239.99860 * 2 1 3 35 35 H 1.09003 * 109.47020 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.46738 * 300.00288 * 3 2 1 37 37 H 1.08995 * 109.47220 * 60.00030 * 3 2 1 38 38 H 1.08996 * 109.47220 * 305.00262 * 4 2 1 39 39 H 1.08994 * 109.47516 * 184.99974 * 4 2 1 40 40 H 1.08006 * 126.29354 * 359.96156 * 6 5 4 41 41 H 1.09006 * 108.75184 * 268.93456 * 11 10 8 42 42 H 1.08998 * 108.74906 * 27.05064 * 11 10 8 43 43 H 1.09003 * 108.17147 * 153.77588 * 12 11 10 44 44 H 1.09003 * 108.17496 * 270.58207 * 12 11 10 45 45 H 1.08994 * 110.82070 * 314.53168 * 15 13 12 46 46 H 1.09002 * 110.82109 * 77.88363 * 15 13 12 47 47 H 1.08996 * 110.01685 * 146.89341 * 16 15 13 48 48 H 1.09004 * 110.01719 * 268.23940 * 16 15 13 49 49 H 0.97000 * 119.99714 * 180.02562 * 21 20 18 50 50 H 1.08999 * 108.41686 * 333.07873 * 28 10 8 51 51 H 1.09002 * 108.41799 * 90.32280 * 28 10 8 52 52 H 1.08004 * 125.98668 * 180.23795 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6524 -2.1328 1.1906 6 6 2.4861 -3.1801 1.2930 7 6 1.7247 -4.3265 1.1848 8 6 2.2198 -5.7142 1.2374 9 8 3.3894 -5.9517 1.0042 10 7 1.3762 -6.7195 1.5442 11 6 1.8915 -8.0655 1.4455 12 6 1.2772 -9.0110 2.4496 13 6 -0.1346 -8.7371 2.8242 14 1 -0.2619 -9.1531 3.8236 15 6 -1.1828 -9.4476 1.9598 16 6 -2.4723 -8.6634 2.2912 17 7 -2.0548 -7.3072 2.6706 18 6 -2.8808 -6.2183 2.7551 19 1 -2.4800 -5.2577 3.0433 20 6 -4.2331 -6.3491 2.4704 21 7 -4.7215 -7.5200 2.1196 22 14 -5.3599 -4.8638 2.5864 23 1 -4.5713 -3.6753 2.9995 24 1 -5.9820 -4.6099 1.2621 25 1 -6.4223 -5.1257 3.5903 26 6 -0.5992 -7.3030 2.9479 27 1 -0.4184 -6.9433 3.9609 28 6 0.0425 -6.3576 1.9469 29 6 0.3813 -3.9209 1.0201 30 7 0.3499 -2.6169 1.0250 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 1.8932 -0.5138 -0.8899 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9563 -0.8900 37 1 1.6767 1.9564 0.8899 38 1 1.6054 -0.2617 2.1369 39 1 3.1262 -0.6443 1.2952 40 1 3.5562 -3.1342 1.4319 41 1 1.6945 -8.4435 0.4423 42 1 2.9699 -8.0402 1.6023 43 1 1.3312 -10.0208 2.0429 44 1 1.8789 -8.9802 3.3580 45 1 -0.9367 -9.3594 0.9017 46 1 -1.2775 -10.4946 2.2480 47 1 -3.1200 -8.6232 1.4155 48 1 -2.9957 -9.1392 3.1206 49 1 -5.6663 -7.6113 1.9203 50 1 0.0740 -5.3605 2.3860 51 1 -0.5870 -6.3182 1.0578 52 1 -0.4704 -4.5759 0.9095 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042290746.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:41 Heat of formation + Delta-G solvation = 84.332706 kcal Electronic energy + Delta-G solvation = -31950.465118 eV Core-core repulsion = 27952.993941 eV Total energy + Delta-G solvation = -3997.471177 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.49375 -39.91937 -38.10142 -36.61004 -35.16010 -33.61481 -32.27242 -31.58224 -30.18925 -29.25440 -28.59785 -27.31294 -26.71398 -24.94073 -24.23601 -23.00138 -21.66941 -21.38854 -20.40045 -20.22356 -19.53840 -17.96162 -16.97674 -16.87516 -16.31752 -15.70834 -15.63825 -15.28572 -14.97675 -14.83471 -14.68071 -14.24282 -13.98438 -13.77875 -13.53605 -13.38072 -13.06389 -12.79599 -12.63485 -12.54863 -12.41894 -12.31814 -12.02856 -11.81703 -11.67204 -11.41937 -11.25011 -11.17476 -11.07289 -10.97374 -10.83993 -10.73672 -10.50090 -10.10326 -9.95425 -9.83904 -9.73581 -9.56978 -9.45999 -9.30773 -8.64293 -8.55476 -8.08341 -6.90934 -5.71719 -3.10357 1.63448 2.34531 2.38766 3.37948 3.40313 3.46287 3.47588 3.66307 4.23006 4.41873 4.45115 4.65128 4.78304 4.85783 5.02038 5.05068 5.06661 5.11237 5.17978 5.26085 5.31879 5.37851 5.46110 5.51126 5.56268 5.60172 5.65211 5.71082 5.75653 5.78363 5.84097 5.85299 5.94924 6.02104 6.06201 6.16927 6.24392 6.31208 6.34033 6.43922 6.58965 6.61263 6.69166 6.87281 6.88714 6.94978 7.09830 7.53425 7.63475 7.66819 7.76634 7.83552 8.26737 8.54692 9.18556 9.78116 10.42120 11.35413 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008723 B = 0.004132 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3209.186947 B = 6774.223521 C = 9707.149044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.106 4.106 3 C -0.145 4.145 4 C 0.134 3.866 5 N -0.363 5.363 6 C 0.119 3.881 7 C -0.290 4.290 8 C 0.586 3.414 9 O -0.564 6.564 10 N -0.586 5.586 11 C 0.122 3.878 12 C -0.107 4.107 13 C -0.092 4.092 14 H 0.055 0.945 15 C -0.137 4.137 16 C 0.167 3.833 17 N -0.596 5.596 18 C -0.229 4.229 19 H 0.079 0.921 20 C -0.004 4.004 21 N -0.918 5.918 22 Si 0.908 3.092 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.291 1.291 26 C 0.164 3.836 27 H 0.042 0.958 28 C 0.091 3.909 29 C 0.080 3.920 30 N -0.291 5.291 31 H 0.049 0.951 32 H 0.092 0.908 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.182 0.818 41 H 0.053 0.947 42 H 0.084 0.916 43 H 0.074 0.926 44 H 0.058 0.942 45 H 0.056 0.944 46 H 0.059 0.941 47 H 0.083 0.917 48 H 0.019 0.981 49 H 0.252 0.748 50 H 0.078 0.922 51 H 0.071 0.929 52 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.761 8.869 -2.297 17.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.125 4.125 3 C -0.203 4.203 4 C 0.013 3.987 5 N -0.141 5.141 6 C -0.033 4.033 7 C -0.305 4.305 8 C 0.375 3.625 9 O -0.445 6.445 10 N -0.316 5.316 11 C -0.001 4.001 12 C -0.145 4.145 13 C -0.112 4.112 14 H 0.073 0.927 15 C -0.175 4.175 16 C 0.042 3.958 17 N -0.321 5.321 18 C -0.357 4.357 19 H 0.097 0.903 20 C -0.200 4.200 21 N -0.566 5.566 22 Si 0.739 3.261 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.218 1.218 26 C 0.056 3.944 27 H 0.060 0.940 28 C -0.034 4.034 29 C -0.107 4.107 30 N -0.111 5.111 31 H 0.068 0.932 32 H 0.110 0.890 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.106 0.894 39 H 0.114 0.886 40 H 0.199 0.801 41 H 0.071 0.929 42 H 0.102 0.898 43 H 0.092 0.908 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.078 0.922 47 H 0.101 0.899 48 H 0.037 0.963 49 H 0.062 0.938 50 H 0.096 0.904 51 H 0.089 0.911 52 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 14.346 9.929 -2.478 17.622 hybrid contribution -0.278 0.028 0.305 0.413 sum 14.069 9.957 -2.174 17.372 Atomic orbital electron populations 1.22108 0.93454 1.05120 1.01121 1.21381 0.98101 0.96009 0.97036 1.21796 1.00823 0.95114 1.02577 1.21955 1.00457 0.76113 1.00198 1.48591 1.05225 1.06161 1.54157 1.22846 0.97239 0.86300 0.96871 1.20237 0.93825 0.93708 1.22688 1.17472 0.84826 0.83897 0.76280 1.90694 1.16991 1.84784 1.52012 1.46533 1.13131 1.05795 1.66170 1.20462 0.99212 0.81483 0.98931 1.20341 0.95741 0.99309 0.99138 1.20069 0.93771 0.96625 1.00694 0.92686 1.22666 0.97496 0.98476 0.98875 1.21406 0.91243 0.82987 1.00161 1.44784 1.00811 1.06602 1.79904 1.19072 0.88917 0.87859 1.39892 0.90296 1.24769 0.96787 0.96907 1.01556 1.69947 1.12768 1.21532 1.52306 0.86094 0.80896 0.81837 0.77308 1.20316 1.21686 1.21834 1.20323 0.86367 0.92240 0.95479 0.94023 1.22272 0.81029 1.00141 0.99977 1.25004 0.97476 0.92351 0.95854 1.77149 0.97697 1.11671 1.24537 0.93169 0.88954 0.92903 0.90708 0.92540 0.91922 0.92249 0.89402 0.88585 0.80068 0.92853 0.89758 0.90775 0.92312 0.92514 0.92207 0.89894 0.96263 0.93785 0.90412 0.91102 0.77784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 8.91 37.15 0.33 -1.37 16 2 C -0.11 -0.90 3.12 -90.62 -0.28 -1.19 16 3 C -0.15 -0.90 9.19 37.16 0.34 -0.56 16 4 C 0.13 1.14 5.94 -4.04 -0.02 1.11 16 5 N -0.36 -4.48 3.65 -60.81 -0.22 -4.70 16 6 C 0.12 1.52 11.31 -16.56 -0.19 1.33 16 7 C -0.29 -4.49 5.53 -105.06 -0.58 -5.07 16 8 C 0.59 10.00 7.52 -12.52 -0.09 9.90 16 9 O -0.56 -10.62 16.14 5.28 0.09 -10.53 16 10 N -0.59 -9.71 3.13 -180.44 -0.56 -10.28 16 11 C 0.12 1.82 6.23 -6.14 -0.04 1.78 16 12 C -0.11 -1.48 5.55 -29.89 -0.17 -1.64 16 13 C -0.09 -1.55 2.32 -93.48 -0.22 -1.77 16 14 H 0.05 0.93 8.01 -51.93 -0.42 0.52 16 15 C -0.14 -2.46 6.47 -25.77 -0.17 -2.62 16 16 C 0.17 3.86 5.53 -3.03 -0.02 3.85 16 17 N -0.60 -14.10 2.91 -164.77 -0.48 -14.58 16 18 C -0.23 -5.95 9.82 -15.06 -0.15 -6.10 16 19 H 0.08 1.99 7.83 -52.48 -0.41 1.58 16 20 C 0.00 -0.10 5.48 -17.43 -0.10 -0.20 16 21 N -0.92 -25.87 10.23 55.49 0.57 -25.30 16 22 Si 0.91 21.53 29.55 -169.99 -5.02 16.51 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 C 0.16 3.20 3.55 -68.44 -0.24 2.95 16 27 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 28 C 0.09 1.62 3.88 -5.96 -0.02 1.60 16 29 C 0.08 1.28 9.56 -16.98 -0.16 1.11 16 30 N -0.29 -4.45 9.52 30.86 0.29 -4.16 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 1.23 5.34 -51.93 -0.28 0.96 16 33 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.10 0.55 8.06 -51.93 -0.42 0.13 16 40 H 0.18 1.80 8.06 -52.48 -0.42 1.38 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.08 1.25 6.93 -51.93 -0.36 0.89 16 43 H 0.07 0.89 7.94 -51.93 -0.41 0.48 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.08 2.17 6.44 -51.93 -0.33 1.83 16 48 H 0.02 0.49 8.11 -51.93 -0.42 0.07 16 49 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 50 H 0.08 1.39 4.95 -51.93 -0.26 1.13 16 51 H 0.07 1.39 6.71 -51.93 -0.35 1.04 16 52 H 0.21 3.42 5.24 -52.48 -0.28 3.14 16 LS Contribution 396.00 15.07 5.97 5.97 Total: -1.00 -30.98 396.00 -9.71 -40.69 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -8.56 Total: 3.28 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -1.77 Total: 3.11 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: -0.40 Total: -59.02 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.09 Total: -10.53 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.98 -9.71 -40.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042290746.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.026 kcal (2) G-P(sol) polarization free energy of solvation -30.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds