Wall clock time and date at job start Wed Apr 1 2020 04:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.47336 * 2 1 4 4 C 1.52999 * 109.47419 * 119.99781 * 2 1 3 5 5 N 1.46502 * 109.47081 * 64.99821 * 4 2 1 6 6 C 1.34257 * 125.75580 * 125.30934 * 5 4 2 7 7 C 1.38047 * 107.41633 * 180.11037 * 6 5 4 8 8 C 1.47435 * 126.41331 * 179.86622 * 7 6 5 9 9 O 1.21603 * 119.99782 * 338.86747 * 8 7 6 10 10 N 1.34768 * 119.99889 * 158.85917 * 8 7 6 11 11 C 1.44472 * 117.13660 * 173.85908 * 10 8 7 12 12 C 1.50979 * 113.13461 * 147.99397 * 11 10 8 13 13 C 1.48615 * 116.02603 * 32.07702 * 12 11 10 14 14 H 1.08998 * 105.76634 * 206.02977 * 13 12 11 15 15 C 1.53318 * 114.96012 * 90.58171 * 13 12 11 16 16 C 1.54521 * 102.38157 * 196.30751 * 15 13 12 17 17 N 1.46885 * 106.66742 * 27.58797 * 16 15 13 18 18 C 1.36932 * 125.36035 * 164.88112 * 17 16 15 19 19 H 1.08003 * 119.99548 * 180.02562 * 18 17 16 20 20 C 1.38813 * 120.00267 * 0.02598 * 18 17 16 21 21 N 1.31623 * 119.99493 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00030 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47226 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.46850 * 120.00276 * 22 20 18 25 25 H 1.48498 * 109.46964 * 239.99912 * 22 20 18 26 26 C 1.48180 * 109.27783 * 344.86293 * 17 16 15 27 27 H 1.09004 * 109.73964 * 237.27560 * 26 17 16 28 28 C 1.43940 * 117.13931 * 353.59970 * 10 8 7 29 29 C 1.41290 * 107.17096 * 359.61043 * 7 6 5 30 30 N 1.30446 * 108.02142 * 0.23927 * 29 7 6 31 31 H 1.09001 * 109.47442 * 60.00143 * 1 2 3 32 32 H 1.09000 * 109.47700 * 180.02562 * 1 2 3 33 33 H 1.09009 * 109.47495 * 300.00104 * 1 2 3 34 34 H 1.08995 * 109.46942 * 239.99860 * 2 1 3 35 35 H 1.09003 * 109.47020 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.46738 * 300.00288 * 3 2 1 37 37 H 1.08995 * 109.47220 * 60.00030 * 3 2 1 38 38 H 1.08996 * 109.47220 * 305.00262 * 4 2 1 39 39 H 1.08994 * 109.47516 * 184.99974 * 4 2 1 40 40 H 1.08006 * 126.29354 * 359.96156 * 6 5 4 41 41 H 1.09006 * 108.75184 * 268.93456 * 11 10 8 42 42 H 1.08998 * 108.74906 * 27.05064 * 11 10 8 43 43 H 1.09003 * 108.17147 * 153.77588 * 12 11 10 44 44 H 1.09003 * 108.17496 * 270.58207 * 12 11 10 45 45 H 1.08994 * 110.82070 * 314.53168 * 15 13 12 46 46 H 1.09002 * 110.82109 * 77.88363 * 15 13 12 47 47 H 1.08996 * 110.01685 * 146.89341 * 16 15 13 48 48 H 1.09004 * 110.01719 * 268.23940 * 16 15 13 49 49 H 0.97000 * 119.99714 * 180.02562 * 21 20 18 50 50 H 1.08999 * 108.41686 * 333.07873 * 28 10 8 51 51 H 1.09002 * 108.41799 * 90.32280 * 28 10 8 52 52 H 1.08004 * 125.98668 * 180.23795 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6524 -2.1328 1.1906 6 6 2.4861 -3.1801 1.2930 7 6 1.7247 -4.3265 1.1848 8 6 2.2198 -5.7142 1.2374 9 8 3.3894 -5.9517 1.0042 10 7 1.3762 -6.7195 1.5442 11 6 1.8915 -8.0655 1.4455 12 6 1.2772 -9.0110 2.4496 13 6 -0.1346 -8.7371 2.8242 14 1 -0.2619 -9.1531 3.8236 15 6 -1.1828 -9.4476 1.9598 16 6 -2.4723 -8.6634 2.2912 17 7 -2.0548 -7.3072 2.6706 18 6 -2.8808 -6.2183 2.7551 19 1 -2.4800 -5.2577 3.0433 20 6 -4.2331 -6.3491 2.4704 21 7 -4.7215 -7.5200 2.1196 22 14 -5.3599 -4.8638 2.5864 23 1 -4.5713 -3.6753 2.9995 24 1 -5.9820 -4.6099 1.2621 25 1 -6.4223 -5.1257 3.5903 26 6 -0.5992 -7.3030 2.9479 27 1 -0.4184 -6.9433 3.9609 28 6 0.0425 -6.3576 1.9469 29 6 0.3813 -3.9209 1.0201 30 7 0.3499 -2.6169 1.0250 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 1.8932 -0.5138 -0.8899 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9563 -0.8900 37 1 1.6767 1.9564 0.8899 38 1 1.6054 -0.2617 2.1369 39 1 3.1262 -0.6443 1.2952 40 1 3.5562 -3.1342 1.4319 41 1 1.6945 -8.4435 0.4423 42 1 2.9699 -8.0402 1.6023 43 1 1.3312 -10.0208 2.0429 44 1 1.8789 -8.9802 3.3580 45 1 -0.9367 -9.3594 0.9017 46 1 -1.2775 -10.4946 2.2480 47 1 -3.1200 -8.6232 1.4155 48 1 -2.9957 -9.1392 3.1206 49 1 -5.6663 -7.6113 1.9203 50 1 0.0740 -5.3605 2.3860 51 1 -0.5870 -6.3182 1.0578 52 1 -0.4704 -4.5759 0.9095 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042290746.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:40 Heat of formation + Delta-G solvation = 67.221074 kcal Electronic energy + Delta-G solvation = -31951.207134 eV Core-core repulsion = 27952.993941 eV Total energy + Delta-G solvation = -3998.213193 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.62471 -41.24296 -39.57444 -37.37305 -36.67855 -35.11170 -33.67535 -32.91913 -31.41657 -30.79135 -30.20427 -28.02582 -27.65566 -26.52416 -25.82280 -24.31514 -22.94063 -22.48709 -21.97690 -21.17350 -20.78637 -19.22251 -18.79698 -18.13203 -17.57033 -16.93984 -16.88315 -16.60669 -16.32652 -16.19073 -15.90664 -15.57885 -15.27208 -15.09959 -14.77330 -14.39719 -14.22129 -14.09000 -13.91808 -13.69005 -13.52998 -13.47492 -13.25853 -13.06000 -12.95600 -12.85105 -12.63780 -12.58673 -12.54581 -12.33228 -11.96053 -11.86950 -11.77154 -11.64596 -11.53153 -11.44220 -11.19426 -11.08624 -10.76858 -10.66925 -10.45380 -9.71244 -9.41240 -8.87973 -7.77856 -5.17003 0.56985 1.14757 1.44031 1.46478 1.48292 1.57209 2.11368 2.39549 2.50547 3.36443 3.36585 3.60406 3.71732 3.75086 3.79674 3.81112 3.89960 3.97272 4.10898 4.16724 4.22697 4.27691 4.29895 4.43881 4.44949 4.50112 4.59783 4.65864 4.68537 4.72628 4.77942 4.79182 4.93461 4.96028 4.99718 5.03166 5.05186 5.15423 5.17897 5.19227 5.32075 5.37748 5.40851 5.52620 5.54934 5.62564 5.73232 5.80184 5.87133 5.96117 6.28032 6.40312 6.56769 7.14630 7.23349 7.80803 8.43385 9.28048 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008723 B = 0.004132 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3209.186947 B = 6774.223521 C = 9707.149044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.101 4.101 3 C -0.139 4.139 4 C 0.123 3.877 5 N -0.352 5.352 6 C 0.137 3.863 7 C -0.318 4.318 8 C 0.586 3.414 9 O -0.582 6.582 10 N -0.587 5.587 11 C 0.118 3.882 12 C -0.100 4.100 13 C -0.083 4.083 14 H 0.057 0.943 15 C -0.121 4.121 16 C 0.171 3.829 17 N -0.612 5.612 18 C -0.227 4.227 19 H 0.082 0.918 20 C -0.059 4.059 21 N -0.947 5.947 22 Si 0.965 3.035 23 H -0.268 1.268 24 H -0.294 1.294 25 H -0.295 1.295 26 C 0.158 3.842 27 H 0.036 0.964 28 C 0.115 3.885 29 C 0.068 3.932 30 N -0.311 5.311 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.096 0.904 39 H 0.136 0.864 40 H 0.217 0.783 41 H 0.057 0.943 42 H 0.090 0.910 43 H 0.103 0.897 44 H 0.075 0.925 45 H 0.062 0.938 46 H 0.086 0.914 47 H 0.047 0.953 48 H -0.012 1.012 49 H 0.245 0.755 50 H 0.076 0.924 51 H 0.048 0.952 52 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.862 10.061 -1.930 20.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.120 4.120 3 C -0.197 4.197 4 C 0.004 3.996 5 N -0.130 5.130 6 C -0.015 4.015 7 C -0.332 4.332 8 C 0.377 3.623 9 O -0.464 6.464 10 N -0.318 5.318 11 C -0.005 4.005 12 C -0.138 4.138 13 C -0.103 4.103 14 H 0.076 0.924 15 C -0.159 4.159 16 C 0.046 3.954 17 N -0.337 5.337 18 C -0.356 4.356 19 H 0.100 0.900 20 C -0.252 4.252 21 N -0.596 5.596 22 Si 0.795 3.205 23 H -0.193 1.193 24 H -0.221 1.221 25 H -0.223 1.223 26 C 0.051 3.949 27 H 0.054 0.946 28 C -0.011 4.011 29 C -0.118 4.118 30 N -0.131 5.131 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.114 0.886 39 H 0.154 0.846 40 H 0.233 0.767 41 H 0.075 0.925 42 H 0.108 0.892 43 H 0.121 0.879 44 H 0.094 0.906 45 H 0.080 0.920 46 H 0.104 0.896 47 H 0.065 0.935 48 H 0.006 0.994 49 H 0.054 0.946 50 H 0.094 0.906 51 H 0.067 0.933 52 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 17.474 11.141 -2.106 20.831 hybrid contribution -1.203 -0.236 0.183 1.240 sum 16.271 10.905 -1.923 19.681 Atomic orbital electron populations 1.22086 0.95420 1.03136 1.01301 1.21334 0.96346 0.97634 0.96706 1.21749 1.01950 0.93093 1.02873 1.22419 1.02946 0.73825 1.00395 1.48921 1.04106 1.07619 1.52381 1.23320 0.98421 0.85306 0.94490 1.20262 0.93944 0.93954 1.25089 1.17640 0.84531 0.84429 0.75692 1.90673 1.17547 1.85154 1.53070 1.46548 1.12396 1.06750 1.66065 1.20636 0.99527 0.80709 0.99597 1.20314 0.93288 1.00387 0.99822 1.20058 0.95339 0.94194 1.00693 0.92405 1.22526 0.94759 0.99166 0.99491 1.21176 0.93332 0.83545 0.97380 1.45001 1.02638 1.06263 1.79801 1.19358 0.89348 0.88725 1.38175 0.90045 1.25458 0.98223 0.99062 1.02433 1.70162 1.12377 1.23117 1.53967 0.85193 0.79060 0.79596 0.76679 1.19256 1.22113 1.22263 1.20509 0.84232 0.94705 0.95410 0.94611 1.21778 0.81436 0.99494 0.98356 1.24745 0.97454 0.92700 0.96939 1.77144 0.99759 1.11270 1.24944 0.92908 0.91910 0.92857 0.91635 0.90668 0.92005 0.91642 0.88600 0.84640 0.76652 0.92473 0.89209 0.87898 0.90643 0.91957 0.89564 0.93474 0.99371 0.94575 0.90641 0.93348 0.79670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.33 8.91 71.98 0.64 -2.69 16 2 C -0.10 -1.51 3.12 -10.80 -0.03 -1.54 16 3 C -0.14 -1.31 9.19 71.98 0.66 -0.65 16 4 C 0.12 1.72 5.94 86.38 0.51 2.23 16 5 N -0.35 -8.04 3.65 -346.30 -1.26 -9.31 16 6 C 0.14 3.19 11.31 84.28 0.95 4.15 16 7 C -0.32 -9.63 5.53 -20.15 -0.11 -9.74 16 8 C 0.59 19.44 7.52 86.67 0.65 20.09 16 9 O -0.58 -20.92 16.14 -4.04 -0.07 -20.99 16 10 N -0.59 -18.99 3.13 -843.06 -2.64 -21.63 16 11 C 0.12 3.24 6.23 86.10 0.54 3.78 16 12 C -0.10 -2.45 5.55 28.55 0.16 -2.30 16 13 C -0.08 -2.68 2.32 -12.64 -0.03 -2.71 16 14 H 0.06 1.84 8.01 -2.39 -0.02 1.82 16 15 C -0.12 -4.24 6.47 31.22 0.20 -4.03 16 16 C 0.17 8.18 5.53 86.82 0.48 8.66 16 17 N -0.61 -29.84 2.91 -675.20 -1.97 -31.81 16 18 C -0.23 -12.16 9.82 84.03 0.83 -11.34 16 19 H 0.08 4.22 7.83 -2.91 -0.02 4.19 16 20 C -0.06 -3.26 5.48 84.86 0.47 -2.80 16 21 N -0.95 -55.75 10.23 21.65 0.22 -55.53 16 22 Si 0.97 45.67 29.55 68.60 2.03 47.69 16 23 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 24 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 25 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 26 C 0.16 6.18 3.55 43.74 0.16 6.34 16 27 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 28 C 0.11 4.14 3.88 86.49 0.34 4.48 16 29 C 0.07 2.22 9.56 85.65 0.82 3.04 16 30 N -0.31 -9.53 9.52 -56.27 -0.54 -10.07 16 31 H 0.05 1.01 8.14 -2.39 -0.02 1.00 16 32 H 0.06 1.70 5.34 -2.39 -0.01 1.69 16 33 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 34 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.14 0.88 8.06 -2.39 -0.02 0.86 16 40 H 0.22 3.41 8.06 -2.91 -0.02 3.38 16 41 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 42 H 0.09 2.44 6.93 -2.39 -0.02 2.42 16 43 H 0.10 2.02 7.94 -2.39 -0.02 2.00 16 44 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 46 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 47 H 0.05 2.59 6.44 -2.39 -0.02 2.57 16 48 H -0.01 -0.63 8.11 -2.39 -0.02 -0.65 16 49 H 0.24 14.12 8.31 -92.71 -0.77 13.35 16 50 H 0.08 2.77 4.95 -2.39 -0.01 2.76 16 51 H 0.05 1.98 6.71 -2.39 -0.02 1.96 16 52 H 0.19 6.64 5.24 -2.91 -0.02 6.62 16 Total: -1.00 -70.40 396.00 3.91 -66.49 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 0.91 Total: 20.20 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: 7.22 Total: 14.96 kcal Atomic # 7 Polarization: -122.17 SS G_CDS: -6.18 Total: -128.35 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.07 Total: -20.99 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.69 kcal Total: -70.40 3.91 -66.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042290746.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.708 kcal (2) G-P(sol) polarization free energy of solvation -70.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds