Wall clock time and date at job start Wed Apr 1 2020 04:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47354 * 2 1 4 4 C 1.52997 * 109.47604 * 239.99535 * 2 1 3 5 5 N 1.46501 * 109.46790 * 119.99602 * 2 1 3 6 6 C 1.35037 * 124.88717 * 75.02873 * 5 2 1 7 7 C 1.35364 * 107.22985 * 179.76051 * 6 5 2 8 8 C 1.41505 * 105.50139 * 0.36008 * 7 6 5 9 9 C 1.47717 * 126.51372 * 179.90440 * 8 7 6 10 10 O 1.21564 * 119.99925 * 5.97920 * 9 8 7 11 11 N 1.34775 * 119.99673 * 185.98219 * 9 8 7 12 12 C 1.44793 * 120.17957 * 356.18696 * 11 9 8 13 13 C 1.51521 * 112.15172 * 264.50042 * 12 11 9 14 14 C 1.51310 * 113.25355 * 285.41622 * 13 12 11 15 15 H 1.08997 * 111.31609 * 186.10303 * 14 13 12 16 16 C 1.54724 * 106.48211 * 307.66630 * 14 13 12 17 17 C 1.54231 * 104.37498 * 89.11991 * 16 14 13 18 18 C 1.50866 * 105.27654 * 11.55791 * 17 16 14 19 19 H 1.08999 * 106.52437 * 121.73615 * 18 17 16 20 20 C 1.49709 * 120.10755 * 176.04120 * 11 9 8 21 21 N 1.48068 * 109.90679 * 7.87729 * 18 17 16 22 22 C 1.36932 * 127.84226 * 155.18260 * 21 18 17 23 23 H 1.07998 * 120.00301 * 149.58289 * 22 21 18 24 24 C 1.38816 * 119.99606 * 329.58060 * 22 21 18 25 25 N 1.31627 * 119.99888 * 157.47620 * 24 22 21 26 26 Si 1.86792 * 120.00385 * 337.47818 * 24 22 21 27 27 H 1.48504 * 109.47332 * 95.08766 * 26 24 22 28 28 H 1.48502 * 109.47252 * 215.08840 * 26 24 22 29 29 H 1.48498 * 109.46985 * 335.08434 * 26 24 22 30 30 N 1.28474 * 124.88305 * 255.02712 * 5 2 1 31 31 H 1.08996 * 109.47499 * 300.00767 * 1 2 3 32 32 H 1.09008 * 109.46905 * 60.00368 * 1 2 3 33 33 H 1.09001 * 109.47353 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47354 * 179.97438 * 3 2 1 35 35 H 1.09008 * 109.46814 * 299.99688 * 3 2 1 36 36 H 1.08996 * 109.47444 * 59.99200 * 3 2 1 37 37 H 1.09001 * 109.47104 * 300.00566 * 4 2 1 38 38 H 1.08999 * 109.47074 * 60.00309 * 4 2 1 39 39 H 1.08996 * 109.47595 * 180.02562 * 4 2 1 40 40 H 1.07995 * 126.38116 * 0.02948 * 6 5 2 41 41 H 1.07999 * 127.24741 * 180.23545 * 7 6 5 42 42 H 1.08994 * 108.93284 * 143.84526 * 12 11 9 43 43 H 1.08992 * 108.93401 * 25.16111 * 12 11 9 44 44 H 1.09003 * 108.72612 * 46.39008 * 13 12 11 45 45 H 1.08998 * 108.72335 * 164.56217 * 13 12 11 46 46 H 1.08994 * 110.45059 * 207.84518 * 16 14 13 47 47 H 1.08997 * 110.44871 * 330.27013 * 16 14 13 48 48 H 1.09002 * 110.28647 * 130.50818 * 17 16 14 49 49 H 1.08998 * 110.28381 * 252.60647 * 17 16 14 50 50 H 1.09001 * 109.53191 * 30.88502 * 20 11 9 51 51 H 1.09000 * 109.69086 * 270.62329 * 20 11 9 52 52 H 0.96993 * 120.00426 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 2.0182 -0.6905 1.1962 6 6 2.0058 -2.0290 1.3745 7 6 2.5406 -2.2762 2.5932 8 6 2.8624 -1.0068 3.1295 9 6 3.4724 -0.7386 4.4478 10 8 3.8470 -1.6624 5.1435 11 7 3.6134 0.5304 4.8794 12 6 3.2448 1.6365 4.0207 13 6 4.4330 2.1911 3.2615 14 6 5.3608 3.0175 4.1251 15 1 6.1428 3.4879 3.5290 16 6 4.4781 4.0737 4.8317 17 6 4.0228 3.3832 6.1335 18 6 4.8723 2.1412 6.2427 19 1 5.4044 2.2120 7.1914 20 6 4.1492 0.8022 6.2506 21 7 5.9213 2.1543 5.1978 22 6 7.1325 1.5158 5.2153 23 1 7.5823 1.1855 4.2907 24 6 7.7823 1.2932 6.4217 25 7 8.6780 0.3337 6.5194 26 14 7.3855 2.3552 7.9062 27 1 6.3618 1.6766 8.7410 28 1 8.6178 2.5656 8.7079 29 1 6.8617 3.6677 7.4501 30 7 2.5198 -0.1098 2.2266 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0277 0.0005 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.6766 1.9564 0.8899 37 1 1.6767 -1.7490 -1.2491 38 1 1.6768 -0.2075 -2.1392 39 1 3.1300 -0.7217 -1.2489 40 1 1.6416 -2.7653 0.6735 41 1 2.6885 -3.2392 3.0591 42 1 2.8138 2.4298 4.6313 43 1 2.4965 1.2949 3.3056 44 1 4.9968 1.3597 2.8382 45 1 4.0671 2.8157 2.4467 46 1 5.0604 4.9669 5.0579 47 1 3.6182 4.3275 4.2120 48 1 4.1969 4.0364 6.9886 49 1 2.9682 3.1153 6.0702 50 1 4.8462 0.0130 6.5325 51 1 3.3275 0.8356 6.9660 52 1 9.1323 0.1783 7.3622 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045790007.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:57 Heat of formation + Delta-G solvation = 105.401870 kcal Electronic energy + Delta-G solvation = -33380.897729 eV Core-core repulsion = 29384.340179 eV Total energy + Delta-G solvation = -3996.557550 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.67250 -39.95453 -38.07216 -36.91643 -34.38126 -32.82981 -32.07293 -30.83521 -30.52322 -30.04360 -27.88884 -27.73835 -27.29182 -26.01267 -24.27681 -23.39353 -22.14908 -21.50765 -20.10840 -19.72446 -19.26350 -18.55784 -17.03627 -16.89135 -16.38677 -15.98786 -15.59762 -15.17418 -14.75249 -14.57776 -14.54371 -14.01823 -13.82040 -13.67695 -13.57068 -13.16208 -12.90025 -12.78781 -12.75573 -12.62259 -12.37996 -12.32678 -12.16827 -12.08776 -11.66931 -11.56460 -11.51819 -11.45483 -11.36490 -11.25382 -10.92435 -10.66451 -10.46521 -10.28145 -9.95060 -9.84735 -9.65895 -9.47319 -9.16782 -8.97827 -8.90315 -8.44015 -7.90372 -6.86023 -5.90948 -3.24797 1.86534 2.33390 2.38161 3.36368 3.49475 3.53782 3.61118 3.94246 4.06896 4.33302 4.43296 4.58958 4.72226 4.77542 4.91943 5.02516 5.08955 5.19736 5.20751 5.28849 5.31312 5.32707 5.40244 5.44413 5.46271 5.54752 5.56531 5.61424 5.74133 5.79069 5.84641 5.88456 5.93626 5.98969 6.02119 6.10941 6.18481 6.25920 6.32363 6.38822 6.51157 6.59230 6.63999 6.69464 6.81606 6.91194 6.93804 7.11488 7.25318 7.86541 8.01345 8.20409 8.40765 8.81912 8.89231 9.73597 10.36601 11.25528 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016214 B = 0.003857 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.440126 B = 7257.495594 C = 7875.051905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.169 3.831 3 C -0.148 4.148 4 C -0.159 4.159 5 N -0.282 5.282 6 C -0.022 4.022 7 C -0.181 4.181 8 C -0.003 4.003 9 C 0.595 3.405 10 O -0.539 6.539 11 N -0.574 5.574 12 C 0.091 3.909 13 C -0.135 4.135 14 C 0.148 3.852 15 H 0.069 0.931 16 C -0.132 4.132 17 C -0.119 4.119 18 C 0.123 3.877 19 H 0.040 0.960 20 C 0.119 3.881 21 N -0.585 5.585 22 C -0.230 4.230 23 H 0.083 0.917 24 C 0.033 3.967 25 N -0.899 5.899 26 Si 0.875 3.125 27 H -0.286 1.286 28 H -0.302 1.302 29 H -0.269 1.269 30 N -0.250 5.250 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.174 0.826 41 H 0.158 0.842 42 H 0.071 0.929 43 H 0.107 0.893 44 H 0.058 0.942 45 H 0.054 0.946 46 H 0.059 0.941 47 H 0.065 0.935 48 H 0.062 0.938 49 H 0.069 0.931 50 H 0.091 0.909 51 H 0.052 0.948 52 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.838 2.643 -15.313 25.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.087 3.913 3 C -0.205 4.205 4 C -0.217 4.217 5 N -0.070 5.070 6 C -0.165 4.165 7 C -0.209 4.209 8 C -0.163 4.163 9 C 0.381 3.619 10 O -0.415 6.415 11 N -0.305 5.305 12 C -0.033 4.033 13 C -0.175 4.175 14 C 0.041 3.959 15 H 0.087 0.913 16 C -0.171 4.171 17 C -0.157 4.157 18 C 0.016 3.984 19 H 0.058 0.942 20 C -0.004 4.004 21 N -0.309 5.309 22 C -0.358 4.358 23 H 0.100 0.900 24 C -0.167 4.167 25 N -0.540 5.540 26 Si 0.706 3.294 27 H -0.213 1.213 28 H -0.230 1.230 29 H -0.195 1.195 30 N -0.084 5.084 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.191 0.809 41 H 0.176 0.824 42 H 0.089 0.911 43 H 0.124 0.876 44 H 0.077 0.923 45 H 0.072 0.928 46 H 0.078 0.922 47 H 0.083 0.917 48 H 0.081 0.919 49 H 0.088 0.912 50 H 0.110 0.890 51 H 0.071 0.929 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.395 3.218 -15.143 24.816 hybrid contribution -0.002 -0.446 1.032 1.124 sum -19.398 2.772 -14.111 24.147 Atomic orbital electron populations 1.22242 0.92526 1.03255 1.03623 1.20964 0.94766 0.94122 0.81477 1.21978 1.02809 0.92402 1.03330 1.22229 1.02752 1.00964 0.95789 1.45999 1.43116 1.04729 1.13185 1.22625 1.07597 0.86450 0.99797 1.21739 1.05259 0.98797 0.95095 1.22129 1.06662 0.91362 0.96146 1.17004 0.78559 0.83129 0.83251 1.90766 1.50393 1.43959 1.56376 1.47907 1.61926 1.04775 1.15927 1.21599 0.97928 0.89481 0.94274 1.21808 0.97326 1.00227 0.98177 1.21297 0.93443 0.89886 0.91266 0.91316 1.22673 0.99316 0.98679 0.96384 1.21792 0.98968 0.96516 0.98412 1.20793 0.90621 0.91822 0.95116 0.94220 1.22443 0.96972 0.99965 0.81039 1.45141 1.13874 1.54595 1.17259 1.18387 0.92595 1.29951 0.94832 0.89987 1.25235 0.96312 0.97573 0.97599 1.69862 1.29104 1.28956 1.26106 0.86862 0.76136 0.82912 0.83538 1.21346 1.23003 1.19487 1.73587 1.14369 1.25138 0.95354 0.91396 0.90175 0.91663 0.91071 0.90793 0.90645 0.91452 0.89944 0.91167 0.80926 0.82430 0.91135 0.87615 0.92340 0.92790 0.92215 0.91672 0.91924 0.91230 0.89033 0.92942 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.95 8.70 37.16 0.32 -0.62 16 2 C 0.17 1.32 1.21 -131.82 -0.16 1.16 16 3 C -0.15 -1.16 8.01 37.16 0.30 -0.87 16 4 C -0.16 -0.95 8.27 37.16 0.31 -0.64 16 5 N -0.28 -3.27 3.16 -48.62 -0.15 -3.42 16 6 C -0.02 -0.25 10.52 -17.17 -0.18 -0.43 16 7 C -0.18 -2.70 10.81 -39.36 -0.43 -3.12 16 8 C 0.00 -0.05 6.84 -82.76 -0.57 -0.62 16 9 C 0.59 12.74 7.69 -12.39 -0.10 12.64 16 10 O -0.54 -13.42 16.56 5.31 0.09 -13.33 16 11 N -0.57 -11.59 2.86 -174.92 -0.50 -12.09 16 12 C 0.09 1.52 4.75 -5.70 -0.03 1.49 16 13 C -0.13 -2.34 4.97 -28.33 -0.14 -2.48 16 14 C 0.15 2.88 4.08 -66.68 -0.27 2.61 16 15 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 16 C -0.13 -2.11 6.01 -25.18 -0.15 -2.27 16 17 C -0.12 -2.03 5.79 -27.16 -0.16 -2.19 16 18 C 0.12 2.67 2.01 -68.56 -0.14 2.53 16 19 H 0.04 0.96 2.80 -51.93 -0.15 0.82 16 20 C 0.12 2.58 6.05 -2.67 -0.02 2.57 16 21 N -0.58 -14.13 2.28 -156.95 -0.36 -14.49 16 22 C -0.23 -6.67 10.63 -15.06 -0.16 -6.83 16 23 H 0.08 2.59 8.06 -52.49 -0.42 2.16 16 24 C 0.03 0.98 5.44 -17.43 -0.09 0.89 16 25 N -0.90 -28.55 13.97 55.49 0.78 -27.77 16 26 Si 0.87 22.90 24.89 -169.99 -4.23 18.67 16 27 H -0.29 -7.34 6.93 56.52 0.39 -6.95 16 28 H -0.30 -8.01 7.11 56.52 0.40 -7.61 16 29 H -0.27 -6.81 7.10 56.52 0.40 -6.41 16 30 N -0.25 -3.70 7.30 33.42 0.24 -3.46 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.31 8.14 -51.92 -0.42 -0.11 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 36 H 0.07 0.67 7.99 -51.93 -0.42 0.25 16 37 H 0.07 0.34 7.27 -51.93 -0.38 -0.04 16 38 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.17 1.28 7.47 -52.49 -0.39 0.88 16 41 H 0.16 2.25 8.06 -52.49 -0.42 1.82 16 42 H 0.07 1.08 3.93 -51.93 -0.20 0.88 16 43 H 0.11 1.65 4.46 -59.57 -0.27 1.38 16 44 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 45 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.06 0.85 7.39 -51.93 -0.38 0.47 16 48 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.07 1.03 6.15 -51.93 -0.32 0.71 16 50 H 0.09 2.37 7.47 -51.93 -0.39 1.98 16 51 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 52 H 0.26 7.94 8.31 -40.82 -0.34 7.60 16 LS Contribution 389.12 15.07 5.86 5.86 Total: -1.00 -36.04 389.12 -8.30 -44.35 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -8.38 Total: 1.86 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -1.66 Total: 3.81 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: 0.01 Total: -61.22 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.09 Total: -13.33 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -4.23 Total: 18.67 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.04 -8.30 -44.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045790007.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.748 kcal (2) G-P(sol) polarization free energy of solvation -36.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds