Wall clock time and date at job start Wed Apr 1 2020 04:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47290 * 2 1 4 4 C 1.52998 * 109.47409 * 120.00069 * 2 1 3 5 5 N 1.46496 * 109.47506 * 177.35073 * 4 2 1 6 6 N 1.28444 * 125.18657 * 276.23814 * 5 4 2 7 7 C 1.30869 * 110.92512 * 180.27806 * 6 5 4 8 8 C 1.39673 * 107.86284 * 359.71416 * 7 6 5 9 9 C 1.36599 * 125.19436 * 96.02610 * 5 4 2 10 10 C 1.47168 * 126.88093 * 359.97438 * 9 5 4 11 11 O 1.21628 * 119.99745 * 20.56101 * 10 9 5 12 12 N 1.34769 * 119.99833 * 200.55997 * 10 9 5 13 13 C 1.44775 * 120.03207 * 356.65709 * 12 10 9 14 14 C 1.51423 * 112.64921 * 264.18943 * 13 12 10 15 15 C 1.51752 * 112.77742 * 286.01969 * 14 13 12 16 16 H 1.09006 * 112.09226 * 187.26728 * 15 14 13 17 17 C 1.55217 * 103.54804 * 308.34005 * 15 14 13 18 18 C 1.53952 * 105.23516 * 98.14080 * 17 15 14 19 19 C 1.49967 * 105.25313 * 359.70247 * 18 17 15 20 20 H 1.08994 * 104.92900 * 129.84752 * 19 18 17 21 21 C 1.50413 * 120.03061 * 176.68250 * 12 10 9 22 22 N 1.48045 * 108.65110 * 62.37639 * 15 14 13 23 23 C 1.36933 * 127.77962 * 95.61066 * 22 15 14 24 24 H 1.07996 * 120.00737 * 0.02562 * 23 22 15 25 25 C 1.38821 * 119.99903 * 180.02562 * 23 22 15 26 26 N 1.31621 * 119.99819 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00099 * 180.02562 * 25 23 22 28 28 H 1.48492 * 109.47348 * 60.00051 * 27 25 23 29 29 H 1.48506 * 109.46985 * 180.02562 * 27 25 23 30 30 H 1.48501 * 109.47177 * 300.00076 * 27 25 23 31 31 H 1.08996 * 109.47030 * 304.91236 * 1 2 3 32 32 H 1.08999 * 109.46961 * 64.91025 * 1 2 3 33 33 H 1.08994 * 109.46790 * 184.90944 * 1 2 3 34 34 H 1.09005 * 109.47528 * 240.00021 * 2 1 3 35 35 H 1.09000 * 109.46891 * 184.98185 * 3 2 1 36 36 H 1.08998 * 109.46757 * 304.97993 * 3 2 1 37 37 H 1.08996 * 109.47367 * 64.97721 * 3 2 1 38 38 H 1.09001 * 109.47010 * 57.34386 * 4 2 1 39 39 H 1.09008 * 109.46815 * 297.34814 * 4 2 1 40 40 H 1.07999 * 126.06998 * 179.74863 * 7 6 5 41 41 H 1.07992 * 127.32427 * 180.02562 * 8 7 6 42 42 H 1.09007 * 108.84670 * 143.37187 * 13 12 10 43 43 H 1.09000 * 108.76556 * 24.95117 * 13 12 10 44 44 H 1.08995 * 108.82360 * 165.16640 * 14 13 12 45 45 H 1.09003 * 108.82245 * 46.86364 * 14 13 12 46 46 H 1.09003 * 110.29143 * 217.08351 * 17 15 14 47 47 H 1.08996 * 110.28874 * 339.19742 * 17 15 14 48 48 H 1.09002 * 110.28675 * 118.64451 * 18 17 15 49 49 H 1.08998 * 110.28825 * 240.75448 * 18 17 15 50 50 H 1.09002 * 109.52514 * 270.48180 * 21 12 10 51 51 H 1.08997 * 109.52432 * 30.66400 * 21 12 10 52 52 H 0.97000 * 120.00021 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5036 -0.7768 1.2177 6 7 4.1976 -1.6601 0.5949 7 6 5.4787 -1.4490 0.7589 8 6 5.6268 -0.3152 1.5610 9 6 4.3386 0.1052 1.8428 10 6 3.9468 1.2666 2.6575 11 8 2.8326 1.3214 3.1421 12 7 4.8227 2.2693 2.8666 13 6 6.1721 2.1718 2.3513 14 6 7.1541 1.6560 3.3821 15 6 7.4931 2.6901 4.4397 16 1 8.2926 2.3541 5.1002 17 6 7.9040 3.9365 3.6111 18 6 6.6491 4.8276 3.5714 19 6 5.6072 4.0763 4.3454 20 1 5.2094 4.8002 5.0565 21 6 4.3994 3.4904 3.6360 22 7 6.2571 3.0348 5.1781 23 6 5.8133 2.5098 6.3624 24 1 6.3915 1.7496 6.8665 25 6 4.6202 2.9548 6.9151 26 7 3.9152 3.8810 6.3005 27 14 4.0151 2.2392 8.5310 28 1 5.0203 2.4960 9.5934 29 1 2.7268 2.8770 8.9033 30 1 3.8169 0.7751 8.3807 31 1 -0.3633 0.5881 0.8427 32 1 -0.3633 0.4358 -0.9307 33 1 -0.3633 -1.0239 0.0879 34 1 1.8934 -0.5138 -0.8900 35 1 3.1264 1.4437 -0.0892 36 1 1.6057 1.9814 -0.8420 37 1 1.7514 1.9300 0.9312 38 1 1.6384 -1.7343 1.2733 39 1 1.7161 -0.1806 2.1386 40 1 6.2793 -2.0452 0.3466 41 1 6.5501 0.1374 1.8908 42 1 6.4949 3.1591 2.0206 43 1 6.1728 1.4967 1.4955 44 1 8.0717 1.3576 2.8752 45 1 6.7243 0.7814 3.8705 46 1 8.7250 4.4614 4.0995 47 1 8.1903 3.6417 2.6016 48 1 6.8525 5.7880 4.0451 49 1 6.3224 4.9747 2.5420 50 1 3.9868 4.2291 2.9489 51 1 3.6438 3.2138 4.3714 52 1 3.0817 4.1922 6.6869 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045790098.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:03 Heat of formation + Delta-G solvation = 103.676519 kcal Electronic energy + Delta-G solvation = -33790.356599 eV Core-core repulsion = 29793.724232 eV Total energy + Delta-G solvation = -3996.632367 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.40235 -39.78503 -37.88666 -36.51607 -34.52934 -33.07641 -32.02478 -31.66260 -30.32653 -29.49673 -27.42363 -27.21609 -26.37402 -25.81674 -24.04533 -22.95716 -21.82805 -21.33915 -20.46314 -19.48200 -19.25487 -18.48763 -16.97903 -16.70543 -16.24759 -15.74132 -15.35344 -14.95683 -14.81095 -14.74201 -14.41337 -13.99680 -13.76816 -13.61894 -13.53959 -13.11518 -12.82202 -12.71714 -12.42920 -12.29291 -12.04825 -12.00269 -11.79223 -11.53068 -11.31341 -11.26790 -11.11680 -11.00030 -10.91905 -10.82703 -10.80936 -10.78342 -10.28931 -10.21626 -9.97525 -9.67170 -9.62970 -9.50323 -9.20851 -8.92181 -8.63853 -8.62010 -7.76750 -6.89395 -5.71525 -3.09846 1.67422 2.62107 2.83894 3.40850 3.46466 3.46992 3.66307 3.77127 4.46517 4.58330 4.69261 4.86803 4.94898 4.96792 5.23376 5.29482 5.36885 5.39616 5.43836 5.49237 5.57545 5.58271 5.60005 5.67045 5.70184 5.74482 5.81264 5.81698 5.87888 5.95703 5.97037 6.00401 6.11527 6.16814 6.25008 6.25859 6.34387 6.43106 6.45183 6.56724 6.67048 6.72566 6.80460 6.95914 6.97961 7.06249 7.20830 7.49812 7.64060 7.85983 8.16141 8.26434 8.31789 8.78784 9.15298 9.75857 10.47107 11.34208 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011140 B = 0.004612 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.900105 B = 6069.585764 C = 6979.493078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.105 4.105 3 C -0.151 4.151 4 C 0.113 3.887 5 N -0.257 5.257 6 N -0.290 5.290 7 C -0.011 4.011 8 C -0.214 4.214 9 C -0.015 4.015 10 C 0.580 3.420 11 O -0.547 6.547 12 N -0.569 5.569 13 C 0.084 3.916 14 C -0.158 4.158 15 C 0.154 3.846 16 H 0.064 0.936 17 C -0.135 4.135 18 C -0.116 4.116 19 C 0.130 3.870 20 H 0.105 0.895 21 C 0.134 3.866 22 N -0.577 5.577 23 C -0.208 4.208 24 H 0.078 0.922 25 C -0.008 4.008 26 N -0.920 5.920 27 Si 0.914 3.086 28 H -0.287 1.287 29 H -0.290 1.290 30 H -0.287 1.287 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.049 0.951 36 H 0.056 0.944 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.125 0.875 40 H 0.181 0.819 41 H 0.176 0.824 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.057 0.943 45 H 0.061 0.939 46 H 0.054 0.946 47 H 0.062 0.938 48 H 0.060 0.940 49 H 0.056 0.944 50 H 0.031 0.969 51 H 0.134 0.866 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.124 -3.614 -13.597 14.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.124 4.124 3 C -0.208 4.208 4 C -0.008 4.008 5 N -0.044 5.044 6 N -0.122 5.122 7 C -0.187 4.187 8 C -0.242 4.242 9 C -0.144 4.144 10 C 0.366 3.634 11 O -0.426 6.426 12 N -0.300 5.300 13 C -0.040 4.040 14 C -0.199 4.199 15 C 0.046 3.954 16 H 0.083 0.917 17 C -0.173 4.173 18 C -0.154 4.154 19 C 0.023 3.977 20 H 0.122 0.878 21 C 0.014 3.986 22 N -0.299 5.299 23 C -0.336 4.336 24 H 0.096 0.904 25 C -0.203 4.203 26 N -0.569 5.569 27 Si 0.745 3.255 28 H -0.213 1.213 29 H -0.215 1.215 30 H -0.214 1.214 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.111 0.889 39 H 0.143 0.857 40 H 0.198 0.802 41 H 0.193 0.807 42 H 0.093 0.907 43 H 0.103 0.897 44 H 0.075 0.925 45 H 0.079 0.921 46 H 0.073 0.927 47 H 0.081 0.919 48 H 0.079 0.921 49 H 0.074 0.926 50 H 0.049 0.951 51 H 0.151 0.849 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.410 -4.229 -13.597 14.245 hybrid contribution 0.456 -0.053 1.107 1.199 sum 0.866 -4.282 -12.489 13.231 Atomic orbital electron populations 1.21756 0.93661 1.02101 1.02606 1.21421 0.96612 0.97145 0.97246 1.21905 1.00867 0.95251 1.02822 1.22431 0.73126 1.03231 1.01963 1.45662 1.07307 1.17623 1.33768 1.73096 1.05942 1.15112 1.18065 1.23526 0.92888 0.99183 1.03105 1.22909 0.97158 0.99487 1.04658 1.21777 0.90785 0.97557 1.04259 1.16916 0.85233 0.81030 0.80254 1.90712 1.21347 1.78920 1.51649 1.48381 1.10230 1.18632 1.52722 1.21590 0.82998 1.02819 0.96567 1.22244 0.97754 1.01429 0.98461 1.21164 0.90732 0.92347 0.91160 0.91748 1.22852 0.97626 0.97531 0.99336 1.21578 0.96084 0.98419 0.99352 1.20415 0.90847 0.92863 0.93549 0.87801 1.23449 1.00046 0.81847 0.93274 1.44874 1.19729 1.43947 1.21376 1.18928 1.03389 1.16318 0.94940 0.90441 1.24647 0.97152 0.99332 0.99177 1.69624 1.16152 1.32260 1.38835 0.86156 0.77895 0.78387 0.83100 1.21338 1.21542 1.21423 0.91809 0.92042 0.92405 0.90709 0.93168 0.92531 0.91159 0.88931 0.85699 0.80201 0.80742 0.90705 0.89673 0.92486 0.92073 0.92745 0.91930 0.92113 0.92564 0.95069 0.84857 0.93510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.19 37.16 0.34 -1.09 16 2 C -0.10 -1.29 3.14 -90.62 -0.28 -1.57 16 3 C -0.15 -2.06 8.18 37.16 0.30 -1.76 16 4 C 0.11 1.62 5.58 -4.04 -0.02 1.60 16 5 N -0.26 -4.20 3.03 -57.14 -0.17 -4.38 16 6 N -0.29 -4.57 11.90 30.59 0.36 -4.21 16 7 C -0.01 -0.15 12.03 -17.43 -0.21 -0.36 16 8 C -0.21 -3.26 8.52 -38.98 -0.33 -3.60 16 9 C -0.01 -0.26 5.48 -82.06 -0.45 -0.71 16 10 C 0.58 11.86 6.87 -12.64 -0.09 11.78 16 11 O -0.55 -12.67 13.63 5.25 0.07 -12.60 16 12 N -0.57 -11.19 2.88 -174.77 -0.50 -11.69 16 13 C 0.08 1.35 4.49 -5.76 -0.03 1.32 16 14 C -0.16 -2.57 3.49 -28.16 -0.10 -2.67 16 15 C 0.15 2.85 4.27 -66.54 -0.28 2.57 16 16 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 17 C -0.13 -2.08 5.93 -25.06 -0.15 -2.23 16 18 C -0.12 -1.98 5.81 -27.74 -0.16 -2.14 16 19 C 0.13 2.79 1.85 -69.01 -0.13 2.66 16 20 H 0.10 2.62 5.94 -51.93 -0.31 2.32 16 21 C 0.13 2.95 5.81 -2.44 -0.01 2.93 16 22 N -0.58 -13.35 2.64 -157.35 -0.42 -13.76 16 23 C -0.21 -5.48 10.38 -15.06 -0.16 -5.63 16 24 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 25 C -0.01 -0.22 5.46 -17.43 -0.10 -0.31 16 26 N -0.92 -25.16 8.03 55.49 0.45 -24.71 16 27 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 28 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 29 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 30 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.05 0.76 6.98 -51.93 -0.36 0.40 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 1.11 7.29 -51.93 -0.38 0.73 16 38 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.13 2.06 5.87 -51.92 -0.30 1.75 16 40 H 0.18 1.84 8.06 -52.49 -0.42 1.41 16 41 H 0.18 2.41 4.03 -52.49 -0.21 2.19 16 42 H 0.07 1.13 4.23 -51.92 -0.22 0.91 16 43 H 0.09 1.23 4.06 -51.93 -0.21 1.02 16 44 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 45 H 0.06 1.16 7.78 -51.93 -0.40 0.76 16 46 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.06 0.81 6.56 -51.93 -0.34 0.47 16 48 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 49 H 0.06 0.86 7.11 -51.93 -0.37 0.49 16 50 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 51 H 0.13 3.54 5.17 -51.93 -0.27 3.28 16 52 H 0.25 6.94 8.31 -40.82 -0.34 6.61 16 LS Contribution 378.17 15.07 5.70 5.70 Total: -1.00 -30.08 378.17 -9.38 -39.46 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -8.00 Total: 8.28 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -1.85 Total: 0.78 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: -0.28 Total: -58.75 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.07 Total: -12.60 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.08 -9.38 -39.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045790098.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.141 kcal (2) G-P(sol) polarization free energy of solvation -30.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds