Wall clock time and date at job start Wed Apr 1 2020 04:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46952 * 2 1 4 4 C 1.53002 * 109.47223 * 119.99409 * 2 1 3 5 5 N 1.46502 * 109.46873 * 65.00431 * 4 2 1 6 6 C 1.34259 * 125.75492 * 124.99814 * 5 4 2 7 7 C 1.38044 * 107.41666 * 179.97438 * 6 5 4 8 8 C 1.47431 * 126.41399 * 179.97438 * 7 6 5 9 9 O 1.21603 * 120.00437 * 205.45056 * 8 7 6 10 10 N 1.34777 * 120.00036 * 25.45272 * 8 7 6 11 11 C 1.44790 * 120.18320 * 175.21847 * 10 8 7 12 12 C 1.51516 * 112.22020 * 264.53628 * 11 10 8 13 13 C 1.51308 * 113.25080 * 285.36091 * 12 11 10 14 14 H 1.09004 * 111.31470 * 185.23898 * 13 12 11 15 15 C 1.54713 * 106.48639 * 307.66692 * 13 12 11 16 16 C 1.54624 * 104.29017 * 88.98949 * 15 13 12 17 17 C 1.50872 * 105.20985 * 11.54145 * 16 15 13 18 18 H 1.09003 * 105.89660 * 122.36537 * 17 16 15 19 19 C 1.49819 * 120.17837 * 355.19533 * 10 8 7 20 20 N 1.48059 * 109.91176 * 8.03738 * 17 16 15 21 21 C 1.36934 * 127.84226 * 155.15742 * 20 17 16 22 22 H 1.07999 * 119.99664 * 34.50898 * 21 20 17 23 23 C 1.38812 * 120.00114 * 214.50201 * 21 20 17 24 24 N 1.31616 * 119.99729 * 19.27076 * 23 21 20 25 25 Si 1.86802 * 120.00134 * 199.26661 * 23 21 20 26 26 H 1.48507 * 109.46946 * 0.02562 * 25 23 21 27 27 H 1.48496 * 109.47167 * 119.99883 * 25 23 21 28 28 H 1.48490 * 109.47300 * 240.00216 * 25 23 21 29 29 C 1.41291 * 107.17231 * 0.22437 * 7 6 5 30 30 N 1.30448 * 108.01836 * 359.61939 * 29 7 6 31 31 H 1.09003 * 109.46819 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47132 * 299.99789 * 1 2 3 33 33 H 1.08999 * 109.47104 * 60.00426 * 1 2 3 34 34 H 1.08992 * 109.47561 * 239.99985 * 2 1 3 35 35 H 1.08997 * 109.47352 * 179.97438 * 3 2 1 36 36 H 1.08999 * 109.46986 * 300.00261 * 3 2 1 37 37 H 1.09005 * 109.46976 * 59.99921 * 3 2 1 38 38 H 1.09000 * 109.47346 * 305.01003 * 4 2 1 39 39 H 1.08996 * 109.47276 * 185.00062 * 4 2 1 40 40 H 1.08002 * 126.28985 * 359.95571 * 6 5 4 41 41 H 1.08997 * 108.93295 * 143.82879 * 11 10 8 42 42 H 1.08999 * 108.92925 * 25.24196 * 11 10 8 43 43 H 1.09003 * 108.72334 * 164.39010 * 12 11 10 44 44 H 1.08997 * 108.72732 * 46.34178 * 12 11 10 45 45 H 1.08998 * 110.45757 * 207.83849 * 15 13 12 46 46 H 1.08996 * 110.45201 * 330.39288 * 15 13 12 47 47 H 1.09000 * 110.17077 * 252.68795 * 16 15 13 48 48 H 1.08998 * 110.53118 * 130.58481 * 16 15 13 49 49 H 1.08999 * 109.54935 * 270.57724 * 19 10 8 50 50 H 1.09000 * 109.54252 * 30.85795 * 19 10 8 51 51 H 0.96994 * 120.00475 * 6.99922 * 24 23 21 52 52 H 1.07996 * 125.99030 * 179.73948 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 1.6525 -2.1327 1.1907 6 6 2.4871 -3.1800 1.2873 7 6 1.7250 -4.3265 1.1844 8 6 2.2203 -5.7141 1.2358 9 8 1.5925 -6.6043 0.6955 10 7 3.3691 -5.9961 1.8819 11 6 3.8062 -7.3691 2.0240 12 6 3.3864 -7.9696 3.3503 13 6 4.2047 -7.4668 4.5194 14 1 3.9393 -7.9851 5.4409 15 6 5.6894 -7.6790 4.1397 16 6 6.0865 -6.3757 3.4086 17 6 4.9505 -5.4164 3.6646 18 1 5.3970 -4.5466 4.1466 19 6 4.2010 -4.8905 2.4563 20 7 4.0113 -5.9985 4.6501 21 6 3.1548 -5.3353 5.4878 22 1 2.6839 -4.4191 5.1635 23 6 2.8917 -5.8407 6.7536 24 7 3.7150 -6.7108 7.2989 25 14 1.3693 -5.2857 7.6830 26 1 0.6132 -4.3104 6.8569 27 1 0.5092 -6.4615 7.9710 28 1 1.7749 -4.6446 8.9594 29 6 0.3822 -3.9210 1.0147 30 7 0.3501 -2.6169 1.0252 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.1299 1.4426 0.0005 36 1 1.6766 1.9563 -0.8900 37 1 1.6766 1.9564 0.8900 38 1 1.6053 -0.2617 2.1370 39 1 3.1263 -0.6442 1.2952 40 1 3.5578 -3.1340 1.4206 41 1 4.8929 -7.4039 1.9482 42 1 3.3778 -7.9620 1.2159 43 1 3.4888 -9.0533 3.2917 44 1 2.3382 -7.7289 3.5273 45 1 6.2957 -7.8164 5.0350 46 1 5.7934 -8.5351 3.4731 47 1 6.1907 -6.5612 2.3395 48 1 7.0162 -5.9774 3.8149 49 1 4.9123 -4.5423 1.7074 50 1 3.5543 -4.0665 2.7580 51 1 4.5553 -6.9225 6.8632 52 1 -0.4687 -4.5759 0.8989 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045871080.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:12 Heat of formation + Delta-G solvation = 85.596785 kcal Electronic energy + Delta-G solvation = -32665.725809 eV Core-core repulsion = 28668.309446 eV Total energy + Delta-G solvation = -3997.416363 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.39518 -39.90408 -37.97826 -36.56543 -34.39401 -32.93212 -32.40364 -32.15409 -30.22884 -29.36940 -27.49668 -27.28895 -26.49893 -25.94511 -23.90526 -23.09295 -21.43159 -21.23989 -20.45997 -19.87984 -19.33176 -18.63328 -17.63714 -16.61439 -16.41816 -15.62706 -15.55759 -15.27139 -14.95404 -14.74701 -14.31919 -14.22312 -13.82348 -13.60337 -13.48022 -13.21050 -13.13202 -12.81644 -12.65236 -12.51444 -12.36687 -12.26065 -12.01830 -11.84823 -11.73223 -11.42214 -11.19554 -11.13736 -11.11163 -11.07887 -10.75065 -10.53749 -10.33317 -10.18603 -10.11719 -9.92179 -9.57753 -9.42287 -9.38268 -9.26030 -8.53065 -8.47583 -8.03414 -6.86744 -6.06212 -3.38528 1.70307 2.38041 2.45077 3.43279 3.47414 3.51198 3.63607 3.85085 4.22449 4.42155 4.49334 4.62506 4.74910 4.82978 5.04768 5.06308 5.09738 5.19477 5.23492 5.27820 5.35964 5.42630 5.45156 5.49733 5.53868 5.64600 5.66718 5.70640 5.73290 5.74625 5.79704 5.80541 5.89998 5.98949 6.07305 6.09275 6.19737 6.26612 6.27235 6.44666 6.52211 6.61878 6.67466 6.75485 6.76324 6.89492 7.06562 7.18678 7.26312 7.67169 7.87000 7.92895 8.45914 8.74872 8.94834 9.72285 10.42440 11.18215 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010508 B = 0.003912 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.891219 B = 7156.527202 C = 8181.923181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.106 4.106 3 C -0.146 4.146 4 C 0.133 3.867 5 N -0.359 5.359 6 C 0.087 3.913 7 C -0.272 4.272 8 C 0.592 3.408 9 O -0.560 6.560 10 N -0.583 5.583 11 C 0.118 3.882 12 C -0.145 4.145 13 C 0.143 3.857 14 H 0.087 0.913 15 C -0.131 4.131 16 C -0.117 4.117 17 C 0.127 3.873 18 H 0.041 0.959 19 C 0.096 3.904 20 N -0.572 5.572 21 C -0.315 4.315 22 H 0.051 0.949 23 C -0.018 4.018 24 N -0.913 5.913 25 Si 1.071 2.929 26 H -0.292 1.292 27 H -0.289 1.289 28 H -0.293 1.293 29 C 0.101 3.899 30 N -0.298 5.298 31 H 0.090 0.910 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.188 0.812 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.053 0.947 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.063 0.937 48 H 0.062 0.938 49 H 0.054 0.946 50 H 0.085 0.915 51 H 0.271 0.729 52 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.743 10.592 -13.736 17.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.125 4.125 3 C -0.204 4.204 4 C 0.012 3.988 5 N -0.138 5.138 6 C -0.063 4.063 7 C -0.287 4.287 8 C 0.381 3.619 9 O -0.440 6.440 10 N -0.314 5.314 11 C -0.004 4.004 12 C -0.186 4.186 13 C 0.037 3.963 14 H 0.105 0.895 15 C -0.169 4.169 16 C -0.155 4.155 17 C 0.019 3.981 18 H 0.059 0.941 19 C -0.028 4.028 20 N -0.295 5.295 21 C -0.443 4.443 22 H 0.069 0.931 23 C -0.221 4.221 24 N -0.553 5.553 25 Si 0.900 3.100 26 H -0.218 1.218 27 H -0.215 1.215 28 H -0.220 1.220 29 C -0.086 4.086 30 N -0.118 5.118 31 H 0.109 0.891 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.107 0.893 39 H 0.115 0.885 40 H 0.204 0.796 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.071 0.929 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.081 0.919 48 H 0.080 0.920 49 H 0.072 0.928 50 H 0.103 0.897 51 H 0.083 0.917 52 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 0.737 11.159 -12.584 16.835 hybrid contribution 1.487 -0.300 -1.152 1.905 sum 2.224 10.859 -13.736 17.650 Atomic orbital electron populations 1.22097 0.93693 1.04871 1.01018 1.21378 0.97944 0.96080 0.97069 1.21799 1.00980 0.95054 1.02532 1.21971 1.00638 0.76133 1.00103 1.48473 1.04946 1.06145 1.54276 1.23623 0.97766 0.86834 0.98033 1.20334 0.94323 0.93394 1.20619 1.17278 0.80042 0.86730 0.77802 1.90706 1.57441 1.48111 1.47767 1.47895 1.22223 1.07266 1.53997 1.20886 0.99813 0.81955 0.97790 1.21916 1.02312 0.98299 0.96032 1.21285 0.90944 0.87916 0.96173 0.89491 1.22729 0.98623 0.96221 0.99372 1.21845 0.97467 0.96724 0.99511 1.20444 0.90211 0.96710 0.90746 0.94065 1.23040 0.93829 0.90444 0.95476 1.44847 1.43341 0.99466 1.41872 1.19514 1.20687 1.09952 0.94161 0.93093 1.25914 1.03795 0.99086 0.93316 1.70690 1.09968 1.34859 1.39756 0.83437 0.75328 0.75841 0.75355 1.21850 1.21540 1.21975 1.23947 0.96821 0.91755 0.96056 1.76987 0.98392 1.11270 1.25139 0.89123 0.92918 0.93273 0.90779 0.92436 0.91980 0.92197 0.89300 0.88497 0.79570 0.90595 0.91137 0.92850 0.92142 0.92167 0.91992 0.91854 0.91951 0.92772 0.89669 0.91728 0.79404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 8.91 37.16 0.33 -1.22 16 2 C -0.11 -0.88 3.12 -90.62 -0.28 -1.17 16 3 C -0.15 -0.91 9.19 37.16 0.34 -0.57 16 4 C 0.13 1.22 5.95 -4.04 -0.02 1.19 16 5 N -0.36 -4.66 3.65 -60.81 -0.22 -4.88 16 6 C 0.09 1.20 9.11 -16.56 -0.15 1.05 16 7 C -0.27 -4.58 5.76 -105.07 -0.60 -5.19 16 8 C 0.59 11.43 7.64 -12.52 -0.10 11.34 16 9 O -0.56 -12.30 16.47 5.27 0.09 -12.21 16 10 N -0.58 -10.49 2.87 -175.27 -0.50 -10.99 16 11 C 0.12 2.09 5.18 -5.71 -0.03 2.06 16 12 C -0.15 -2.89 5.01 -28.34 -0.14 -3.03 16 13 C 0.14 3.09 3.03 -66.68 -0.20 2.89 16 14 H 0.09 2.19 6.08 -51.93 -0.32 1.88 16 15 C -0.13 -2.27 6.04 -24.98 -0.15 -2.42 16 16 C -0.12 -1.84 5.80 -26.95 -0.16 -2.00 16 17 C 0.13 2.34 2.58 -68.85 -0.18 2.16 16 18 H 0.04 0.80 8.09 -51.93 -0.42 0.38 16 19 C 0.10 1.54 4.47 -2.90 -0.01 1.53 16 20 N -0.57 -13.31 2.35 -157.28 -0.37 -13.68 16 21 C -0.31 -8.43 10.14 -15.06 -0.15 -8.59 16 22 H 0.05 1.41 7.90 -52.49 -0.41 0.99 16 23 C -0.02 -0.50 5.27 -17.43 -0.09 -0.59 16 24 N -0.91 -26.57 12.56 55.49 0.70 -25.87 16 25 Si 1.07 25.48 29.96 -169.99 -5.09 20.39 16 26 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 28 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 29 C 0.10 1.63 11.92 -16.98 -0.20 1.42 16 30 N -0.30 -4.45 9.52 30.86 0.29 -4.16 16 31 H 0.09 1.09 5.34 -51.93 -0.28 0.82 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.10 0.65 8.06 -51.93 -0.42 0.23 16 40 H 0.19 2.06 5.36 -52.49 -0.28 1.78 16 41 H 0.08 1.18 3.92 -51.93 -0.20 0.98 16 42 H 0.07 1.27 7.17 -51.93 -0.37 0.90 16 43 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 45 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 46 H 0.06 0.93 7.38 -51.93 -0.38 0.54 16 47 H 0.06 0.86 6.13 -51.93 -0.32 0.54 16 48 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 49 H 0.05 0.68 7.70 -51.93 -0.40 0.28 16 50 H 0.09 1.42 4.91 -51.93 -0.26 1.17 16 51 H 0.27 7.84 6.63 -40.82 -0.27 7.56 16 52 H 0.19 2.76 8.06 -52.49 -0.42 2.33 16 LS Contribution 390.12 15.07 5.88 5.88 Total: -1.00 -33.19 390.12 -9.23 -42.42 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -8.20 Total: 4.22 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -1.80 Total: -1.12 kcal Atomic # 7 Polarization: -59.48 SS G_CDS: -0.10 Total: -59.58 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.09 Total: -12.21 kcal Atomic # 14 Polarization: 25.48 SS G_CDS: -5.09 Total: 20.39 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.19 -9.23 -42.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045871080.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.019 kcal (2) G-P(sol) polarization free energy of solvation -33.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds