Wall clock time and date at job start Wed Apr 1 2020 05:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47134 * 2 1 4 4 C 1.52998 * 109.47013 * 119.99780 * 2 1 3 5 5 N 1.46506 * 109.47357 * 174.99872 * 4 2 1 6 6 N 1.28447 * 125.18508 * 86.94086 * 5 4 2 7 7 C 1.30864 * 110.92167 * 180.02562 * 6 5 4 8 8 C 1.39675 * 107.86505 * 0.26100 * 7 6 5 9 9 C 1.36591 * 125.19027 * 266.94318 * 5 4 2 10 10 C 1.47169 * 126.88588 * 0.03480 * 9 5 4 11 11 O 1.21625 * 119.99792 * 5.52067 * 10 9 5 12 12 N 1.34770 * 119.99830 * 185.51738 * 10 9 5 13 13 C 1.46500 * 119.99952 * 185.14431 * 12 10 9 14 14 H 1.09004 * 109.32394 * 34.64799 * 13 12 10 15 15 C 1.53034 * 109.32838 * 154.11493 * 13 12 10 16 16 C 1.53966 * 108.83398 * 175.67660 * 15 13 12 17 17 H 1.08997 * 113.67432 * 168.55601 * 16 15 13 18 18 C 1.55427 * 106.41609 * 293.83148 * 16 15 13 19 19 C 1.55164 * 100.35433 * 73.36922 * 18 16 15 20 20 H 1.09010 * 112.48179 * 163.34693 * 19 18 16 21 21 C 1.52993 * 109.32666 * 275.00320 * 13 12 10 22 22 N 1.47790 * 104.88177 * 40.82469 * 19 18 16 23 23 C 1.36932 * 125.85801 * 153.22002 * 22 19 18 24 24 H 1.07999 * 120.00108 * 359.97438 * 23 22 19 25 25 C 1.38808 * 120.00011 * 179.97438 * 23 22 19 26 26 N 1.31625 * 120.00363 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00174 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.47071 * 89.99975 * 27 25 23 29 29 H 1.48502 * 109.47182 * 210.00038 * 27 25 23 30 30 H 1.48498 * 109.46917 * 330.00085 * 27 25 23 31 31 C 1.48747 * 107.40218 * 333.52544 * 22 19 18 32 32 H 1.09005 * 109.47244 * 300.00098 * 1 2 3 33 33 H 1.09005 * 109.46896 * 59.99892 * 1 2 3 34 34 H 1.08998 * 109.47458 * 180.02562 * 1 2 3 35 35 H 1.08991 * 109.47439 * 239.99792 * 2 1 3 36 36 H 1.09005 * 109.47135 * 59.99836 * 3 2 1 37 37 H 1.09005 * 109.47278 * 179.97438 * 3 2 1 38 38 H 1.08995 * 109.47286 * 300.00045 * 3 2 1 39 39 H 1.09001 * 109.47387 * 55.00229 * 4 2 1 40 40 H 1.08998 * 109.47351 * 295.00372 * 4 2 1 41 41 H 1.08000 * 126.06992 * 180.02562 * 7 6 5 42 42 H 1.07995 * 127.32523 * 179.70001 * 8 7 6 43 43 H 0.97006 * 120.00330 * 5.15416 * 12 10 9 44 44 H 1.09001 * 109.57782 * 295.48709 * 15 13 12 45 45 H 1.09008 * 109.57253 * 55.87437 * 15 13 12 46 46 H 1.09002 * 111.23186 * 315.58922 * 18 16 15 47 47 H 1.09005 * 111.27242 * 191.16709 * 18 16 15 48 48 H 1.09000 * 109.53279 * 304.52844 * 21 13 12 49 49 H 1.09003 * 109.52837 * 64.75491 * 21 13 12 50 50 H 0.96993 * 120.00423 * 179.97438 * 26 25 23 51 51 H 1.08996 * 109.84161 * 241.62430 * 31 22 19 52 52 H 1.08997 * 109.93674 * 120.48825 * 31 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1906 6 7 4.3238 0.0667 1.6075 7 6 5.5613 -0.3148 1.4191 8 6 5.5344 -1.5748 0.8170 9 6 4.1930 -1.8891 0.6844 10 6 3.6268 -3.1183 0.1064 11 8 2.4246 -3.2203 -0.0473 12 7 4.4404 -4.1310 -0.2527 13 6 3.8903 -5.3073 -0.9308 14 1 3.0719 -4.9989 -1.5814 15 6 4.9849 -5.9627 -1.7761 16 6 4.4262 -7.2564 -2.3963 17 1 5.0669 -7.6842 -3.1674 18 6 4.1573 -8.2296 -1.2145 19 6 2.8934 -7.5752 -0.5965 20 1 2.3605 -8.2494 0.0741 21 6 3.3629 -6.2932 0.1135 22 7 2.0724 -7.1664 -1.7554 23 6 0.7099 -7.0300 -1.7650 24 1 0.1410 -7.2284 -0.8687 25 6 0.0600 -6.6366 -2.9267 26 7 0.7532 -6.3952 -4.0193 27 14 -1.7988 -6.4512 -2.9401 28 1 -2.1602 -5.0611 -2.5629 29 1 -2.3158 -6.7452 -4.3008 30 1 -2.3978 -7.3997 -1.9672 31 6 2.9972 -6.9413 -2.8985 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3634 -1.0276 0.0005 35 1 1.8933 -0.5138 -0.8899 36 1 1.6766 1.9564 0.8900 37 1 3.1300 1.4425 0.0005 38 1 1.6767 1.9563 -0.8899 39 1 1.6054 -1.7198 1.2952 40 1 1.7515 -0.1583 2.1370 41 1 6.4464 0.2468 1.6793 42 1 6.3804 -2.1769 0.5201 43 1 5.3902 -4.0810 -0.0621 44 1 5.2918 -5.2805 -2.5688 45 1 5.8409 -6.2004 -1.1444 46 1 4.9870 -8.2309 -0.5076 47 1 3.9455 -9.2372 -1.5723 48 1 4.1576 -6.5372 0.8185 49 1 2.5253 -5.8448 0.6476 50 1 0.2990 -6.1207 -4.8312 51 1 2.9374 -5.9027 -3.2238 52 1 2.7375 -7.6052 -3.7230 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047080064.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:47 Heat of formation + Delta-G solvation = 65.270263 kcal Electronic energy + Delta-G solvation = -32351.400011 eV Core-core repulsion = 28353.102224 eV Total energy + Delta-G solvation = -3998.297787 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.56851 -39.97652 -38.43170 -36.56795 -34.58322 -32.86410 -32.01854 -31.18336 -30.67742 -29.32773 -28.18567 -27.22043 -26.57665 -25.31027 -23.53640 -23.13065 -21.88460 -21.10173 -20.54747 -19.79368 -19.44077 -18.69224 -17.70657 -16.93200 -16.19071 -16.01340 -15.73275 -15.07105 -14.72423 -14.52693 -14.30150 -14.21855 -13.98921 -13.64190 -13.53730 -13.28491 -12.94730 -12.75750 -12.75270 -12.30782 -12.04961 -12.02594 -11.82613 -11.77606 -11.57829 -11.42490 -11.21687 -11.06222 -10.82581 -10.77834 -10.71848 -10.68531 -10.55539 -9.97638 -9.95304 -9.76043 -9.69027 -9.50550 -9.34454 -9.18990 -9.04112 -8.62712 -8.55672 -6.77704 -5.64671 -2.95942 1.34312 2.39355 2.59056 3.39731 3.41731 3.46259 3.51244 3.51993 4.46173 4.56282 4.63811 4.70285 4.84726 4.97184 5.12588 5.20678 5.21838 5.25418 5.40450 5.45537 5.52898 5.54606 5.55473 5.62192 5.63812 5.70128 5.76005 5.86748 5.87583 5.87915 6.02598 6.02951 6.06301 6.08563 6.12063 6.20797 6.21485 6.23641 6.43787 6.55586 6.60615 6.65435 6.73591 6.83137 6.87015 6.98018 7.03641 7.57322 7.60512 7.70913 7.85494 8.06175 8.27860 8.41946 9.25899 9.88081 10.55867 11.48670 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009973 B = 0.004070 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2806.940789 B = 6877.115232 C = 9019.802872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.106 4.106 3 C -0.147 4.147 4 C 0.119 3.881 5 N -0.250 5.250 6 N -0.280 5.280 7 C -0.009 4.009 8 C -0.198 4.198 9 C -0.028 4.028 10 C 0.580 3.420 11 O -0.519 6.519 12 N -0.711 5.711 13 C 0.150 3.850 14 H 0.116 0.884 15 C -0.112 4.112 16 C -0.118 4.118 17 H 0.083 0.917 18 C -0.129 4.129 19 C 0.156 3.844 20 H 0.064 0.936 21 C -0.136 4.136 22 N -0.596 5.596 23 C -0.217 4.217 24 H 0.076 0.924 25 C -0.006 4.006 26 N -0.923 5.923 27 Si 0.907 3.093 28 H -0.289 1.289 29 H -0.292 1.292 30 H -0.282 1.282 31 C 0.177 3.823 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.119 0.881 40 H 0.094 0.906 41 H 0.183 0.817 42 H 0.157 0.843 43 H 0.393 0.607 44 H 0.061 0.939 45 H 0.055 0.945 46 H 0.060 0.940 47 H 0.063 0.937 48 H 0.043 0.957 49 H 0.060 0.940 50 H 0.250 0.750 51 H 0.047 0.953 52 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.341 9.293 9.272 17.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.125 4.125 3 C -0.204 4.204 4 C -0.001 4.001 5 N -0.037 5.037 6 N -0.112 5.112 7 C -0.185 4.185 8 C -0.227 4.227 9 C -0.157 4.157 10 C 0.364 3.636 11 O -0.395 6.395 12 N -0.361 5.361 13 C 0.047 3.953 14 H 0.134 0.866 15 C -0.150 4.150 16 C -0.137 4.137 17 H 0.102 0.898 18 C -0.167 4.167 19 C 0.048 3.952 20 H 0.082 0.918 21 C -0.177 4.177 22 N -0.320 5.320 23 C -0.346 4.346 24 H 0.094 0.906 25 C -0.202 4.202 26 N -0.571 5.571 27 Si 0.738 3.262 28 H -0.217 1.217 29 H -0.219 1.219 30 H -0.208 1.208 31 C 0.053 3.947 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.137 0.863 40 H 0.112 0.888 41 H 0.200 0.800 42 H 0.175 0.825 43 H 0.227 0.773 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.078 0.922 47 H 0.081 0.919 48 H 0.062 0.938 49 H 0.079 0.921 50 H 0.061 0.939 51 H 0.065 0.935 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 9.431 10.171 9.389 16.750 hybrid contribution 0.126 -0.356 -0.258 0.457 sum 9.557 9.815 9.131 16.464 Atomic orbital electron populations 1.21740 0.93368 1.02982 1.02017 1.21397 0.96963 0.96511 0.97666 1.21871 1.01629 0.95237 1.01650 1.22393 0.72622 1.04955 1.00081 1.45787 1.07555 1.10112 1.40292 1.73180 1.01145 1.17206 1.19673 1.23508 0.94553 0.96279 1.04153 1.22193 0.94719 0.98901 1.06860 1.21661 0.92249 0.93536 1.08266 1.16951 0.86453 0.81651 0.78567 1.90886 1.13834 1.81105 1.53670 1.45922 1.10867 1.18934 1.60365 1.21260 0.96986 0.83271 0.93779 0.86601 1.21958 0.96875 0.97613 0.98525 1.22800 0.99645 0.94081 0.97195 0.89830 1.22996 0.97854 0.98494 0.97367 1.21490 0.90720 0.92427 0.90611 0.91844 1.22618 0.99491 0.98208 0.97364 1.44972 1.02119 1.79381 1.05571 1.18986 0.80448 1.38827 0.96315 0.90585 1.24703 0.97700 1.01920 0.95878 1.69914 1.33399 1.52914 1.00912 0.86188 0.85545 0.77862 0.76618 1.21674 1.21854 1.20825 1.21575 0.83169 0.99995 0.89926 0.92565 0.91921 0.91496 0.90133 0.92553 0.92261 0.92611 0.86320 0.88753 0.80023 0.82509 0.77304 0.92034 0.92629 0.92159 0.91854 0.93791 0.92131 0.93934 0.93503 0.93725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.19 37.16 0.34 -1.32 16 2 C -0.11 -1.36 3.13 -90.62 -0.28 -1.64 16 3 C -0.15 -1.67 8.97 37.16 0.33 -1.33 16 4 C 0.12 1.57 5.22 -4.04 -0.02 1.54 16 5 N -0.25 -3.51 3.09 -57.13 -0.18 -3.69 16 6 N -0.28 -3.70 10.60 30.59 0.32 -3.38 16 7 C -0.01 -0.10 12.03 -17.43 -0.21 -0.31 16 8 C -0.20 -2.24 10.50 -38.98 -0.41 -2.65 16 9 C -0.03 -0.40 6.96 -82.06 -0.57 -0.97 16 10 C 0.58 9.70 7.74 -12.64 -0.10 9.60 16 11 O -0.52 -10.76 14.39 5.26 0.08 -10.68 16 12 N -0.71 -10.47 5.04 -54.95 -0.28 -10.75 16 13 C 0.15 2.64 2.04 -67.92 -0.14 2.50 16 14 H 0.12 2.70 5.44 -51.93 -0.28 2.42 16 15 C -0.11 -1.69 4.96 -26.21 -0.13 -1.82 16 16 C -0.12 -2.02 4.33 -87.93 -0.38 -2.40 16 17 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 18 C -0.13 -2.13 6.18 -24.30 -0.15 -2.28 16 19 C 0.16 3.10 4.25 -65.62 -0.28 2.82 16 20 H 0.06 1.26 8.14 -51.92 -0.42 0.83 16 21 C -0.14 -2.46 5.27 -26.28 -0.14 -2.60 16 22 N -0.60 -14.65 2.49 -160.03 -0.40 -15.05 16 23 C -0.22 -6.04 10.30 -15.06 -0.16 -6.20 16 24 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 25 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 26 N -0.92 -27.16 10.49 55.49 0.58 -26.58 16 27 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 28 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 29 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 30 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 31 C 0.18 4.11 4.17 -1.90 -0.01 4.10 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.75 6.77 -51.93 -0.35 0.40 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.12 1.76 6.26 -51.93 -0.33 1.43 16 40 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.18 1.37 8.06 -52.49 -0.42 0.95 16 42 H 0.16 1.28 7.63 -52.49 -0.40 0.88 16 43 H 0.39 4.39 7.69 -40.82 -0.31 4.07 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.06 0.69 7.97 -51.92 -0.41 0.27 16 46 H 0.06 0.84 7.75 -51.93 -0.40 0.43 16 47 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 48 H 0.04 0.68 8.00 -51.93 -0.42 0.27 16 49 H 0.06 1.26 8.13 -51.93 -0.42 0.84 16 50 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 51 H 0.05 1.22 6.21 -51.93 -0.32 0.89 16 52 H 0.04 1.16 7.47 -51.93 -0.39 0.78 16 LS Contribution 400.81 15.07 6.04 6.04 Total: -1.00 -32.45 400.81 -9.90 -42.35 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -8.66 Total: 7.28 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -2.39 Total: -3.22 kcal Atomic # 7 Polarization: -59.49 SS G_CDS: 0.05 Total: -59.44 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.08 Total: -10.68 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.45 -9.90 -42.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047080064.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.622 kcal (2) G-P(sol) polarization free energy of solvation -32.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds